Table 1

Putative local RNA structures

Low SHAPE reactivity region (nt)Median pairing probabilityGene (known structure)
135–4739.92E−015′ UTR (IRES)
482–5379.93E−015′ UTR (IRES)
544–6879.76E−015′ UTR (IRES)
694–8011.01E−035′ UTR-VP4
1779–18722.93E−03VP3
2327–24707.10E−04VP3
5276–53964.50E−053A-3B
5715–58286.36E−033C (RNase L ciRNA)
5900–59932.11E−013C (RNase L ciRNA)
6180–63416.34E−063D
6354–64777.56E−073D
6929–70608.99E−013D
7132–72843.85E−033D