Table 1

Transcripts of CD surface markers differentially expressed in latently infected versus uninfected CD4+ T cells generated in vitroa

FunctionGeneLog FC
Upregulated transcripts
    TCR associatedCD20.42
CD3δ0.30
CD40.45
CD60.49
CD381.11
CD278/ICOS0.57
    TNFR familyCD2620.72
CD2700.37
APO-30.57
    TNF familyCD40L0.54
CD700.52
    Cytokine receptorsCD124/IL4RA0.36
CD130/IL6RB0.67
CD218A/IL18RA0.62
CD218B/IL18RB0.52
IFNGR20.41
    Chemokine receptorsCD197/CCR70.57
CD184/CXCR40.43
    OtherCD320.36
CD691.17
Downregulated transcripts
    IntegrinsCD49/α1−0.54
CD11b/αM−0.42
CD11c/αX−0.73
CD29/β1−0.47
    Chemokine receptorsCD183/CXCR3−0.59
CD186/CXCR6−0.54
    Costimulatory receptorsCD8b−1.02
CD48−0.49
CD80−0.44
    OtherCD35−0.65
CD73−1.01
CD164−0.35
CD117/c-kit−0.71
  • a Log FC, log2 fold change in infected versus uninfected cells; TNFR, TNF receptor.