Table 1.

PCR primers used to amplify viral gene fragments

GenePrimer directionPrimer sequence
M12Forward5′-CCGCGAATAAACAAGTGGAT-3′
Reverse5′-AGATTTTCGTCCGTGACT-3′
M45Forward5′-GAGACGATGGCGGTGTAGAG-3′
Reverse5′-GGGAGACGACGAAGATCAGT-3′
M49Forward5′-GTGTGATTGCCCTCCAACTT-3′
Reverse5′-TTTCGTCGAACGCTACTGTC-3′
M58Forward5′-TCACAATCCTCACGCAAGC-3′
Reverse5′-TGCTACGAGACCACAAATCG-3′
M86Forward5′-GGGTAGCGGAAGAACTCCAG-3′
Reverse5′-CGTGAGCCAGAACATCAACA-3′
M102Forward5′-GAGGCACTTTCGCATCAAC-3′
Reverse5′-ACGCGCTTGCAGATGTAGTT-3′
m107Forward5′-TGTCCGATGCGATCAAGTAA-3′
Reverse5′-TGCGGATGTTCAACCTAGTG-3′
m117.1Forward5′-GCATGAAAGGCAGAGGTAGC-3′
Reverse5′-CGTGCTGCTTAGCGTTTTTA-3′
M119.1Forward5′- TCGATCCATAGTCCCGAAAG-3′
Reverse5′-AAGTGACGGAACCCACTGAG-3′
M122Forward5′-CAGAGGGAGGTGTGAAAGGA-3′
Reverse5′-TGAGAGTGAGGCAGATGAGG-3′
m129/1Forward5′-GGGGCGCGATAGGGGGTGTC-3′
Reverse5′-GAAGTCTAACAATCTCTCGG-3′
m129/2Forward5′-TGTGAGATCACCTGGGTCGG-3′
Reverse5′-GTATGTCATGGTTTTTAATC-3′
m131Forward5′-GCTTAACGTTTCACTGATTC-3′
Reverse5′-AGGACACGCAGTCTGGAATC-3′