TABLE 1

Genetic differences identified between the sequences of L10 and SFV4a

Location in genomePosition in SFV4Amino acid residue(s) in SFV4-L10
NucleotideAmino acid
5′UTR59
nsP11627514V
nsP22485800L
nsP342361384E-A
Capsid748822P
760963R-G
767785N-K
E28530370V-I
8732437K-T
8905495bK-E
E1109231167V
3′UTR11333
  • a Nucleotide and amino acid residue numbering is according to the published sequence of SFV4 (GenBank accession number KP699763). Amino acid residue numbering is from the start of the replicase and structural ORFs for the nsPs and the structural proteins. The 5′ untranslated region and replicase numbering also correspond to the published L10 reference sequence (AY112987). However, in contrast to the L10 reference sequence, the structural ORF and 3[prime] untranslated sequences shown are shifted by three nucleotides or one amino acid residue.

  • b Amino acid residue corresponds to residue number 162 in the E2 glycoprotein.