TABLE 3.

Coding potential and putative transcription regulatory sequences of the genomes of BuCoV HKU11, ThCoV HKU12, and MuCoV HKU13

CoVORFStart-end (nucleotide position)No. of nucleotidesNo. of amino acidsFramePutative TRS
Nucleotide position in genome(s)TRS sequence(s) (distance in bases to AUG)
BuCoV HKU111ab607-1939418,7886,262+1, +372ACACCA(529)AUG
S19376-228673,4921,163+219230 or 19320 or 19368ACACCA(140)AUG or AAACCA(50)AUG or CCACCA(2)AUG
E22861-2310924982+122835ACACCA(20)AUG
M23106-23807702233+323079ACACCA(21)AUG
NS623807-2409428895+2
N24115-251641,050349+124102ACACCA(7)AUG
NS7a25343-25714372123+2
NS7b25720-2597425584+125689ACACCA(25)AUG
NS7c25971-2625528594+3
ThCoV HKU121ab592-1945118,8606,286+3, +265ACACCA(521)AUG
S19433-230113,5791,192+119287 or 19377 or 19425ACACCA(140)AUG or AAACCA(50)AUG or CCGCCA(2)AUG
E23005-2325324982+322979ACACCA(20)AUG
M23246-23899654217+123223ACACCA(17)AUG
NS623899-2417427691+3
N24192-252231,032343+224179ACACCA(7)AUG
NS7a25255-25626372123+3
NS7b25632-2588325283+225604UCACAA(22)AUG
NS7c25940-2617323477+1
MuCoV HKU131ab595-1951718,9236,307+3, +264ACACCA(525)AUG
S19499-229693,4711,156+119324 or 19443 or 19491ACACCA(140)AUG or AAACCA(50)AUG or CCACCA(2)AUG
E22963-2321124982+322934ACACCC(23)AUG
M23204-23860657218+123181ACACCA(17)AUG
NS623860-24186327108+3
N24326-253841,059352+124311ACACCA(9)AUG
NS7a25417-25788372123+3
NS7b25794-2605125885+225766ACACCA(22)AUG
NS7c26048-2632928293+1