TABLE 1.

Complete Oka-VGSK genome annotation

StartStopFeatureaORFFunction or comment
8889MiscellaneousTRL/UL boundary
914587Gene1
592587Poly(A) signal
914588CDS1
11331861Gene2
11331849CDS2
18561861Poly(A) signal
24461889Gene3
18941889Poly(A) signal
24461907CDS3
41402781Gene4
27812776Poly(A) signal
41402782CDS4Transactivator, tegument protein
52734251Gene5
52734251CDS5gK
85765325Gene6
86069398Gene7
93939398Poly(A) signal
86069385CDS7
106669425Gene8
94309425Poly(A) signal
106669476CDS8Deoxyuridine triphosphatase
1064110904CDS9AbgN
1100811963Gene9
1195811963Poly(A) signal
1100811916CDS9Syncytium formation, virion protein
1215913420Gene10
1341513420Poly(A) signal
1215913391CDS10Transactivator, tegument protein
1358916076Gene11
1393614196Repeat regionReiteration R1
1607116076Poly(A) signal
1358916003CDS11
1616818153Gene12
1869519350Gene13
1934519350Poly(A) signal
1839519300CDS13
2106719296Gene14
1930119296Poly(A) signal
2052620851Repeat regionReiteration R2
2106719385CDS14
2243221198Gene15
2120321198Poly(A) signal
2243221212CDS15
2374822522Gene16
2410325468Gene17
2546325468Poly(A) signal
2410325467CDS17
2644425501Gene18
2550625501Poly(A) signal
2644425524CDS18Ribonucleotide reductase, small subunit
2879626469Gene19Ribonucleotide reductase, big subunit
3042628956Gene20
2896128956Poly(A) signal
3042628975CDS20
3071033856Gene21
3385133856Poly(A) signal
3071033826CDS21Nucleocapsid
3403442341Gene22
4140541470Repeat regionReiteration R3
4233642341Poly(A) signal
3403442325CDS22
4309042378Gene23
4238342378Poly(A) signal
4309042383CDS23
4397343163Gene24
4316843163Poly(A) signal
4397343164CDS24
4457044083Gene25
4408844083Poly(A) signal
4457044100CDS25
4445846125Gene26
4607947195Gene27
4719047195Poly(A) signal
4607947080CDS27
5058846983Gene28
4698846983Poly(A) signal
5058847004CDS28DNA polymerase
5080954460Gene29
5445554460Poly(A) signal
5080954408CDS29ssDNA binding protein
5458756899Gene30
5694459584Gene31
5957959584Poly(A) signal
5694459550CDS31gB, fusogen
5970360150Gene32
6014560150Poly(A) signal
5970360134CDS32Substrate for ORF 47 kinase
6207460245Gene33
6025060245Poly(A) signal
6207460257CDS33Protease
6384662107Gene34
6468963913CDS35
6430064306promoterTATA element
64321643255′end of dPyKmRNA
6474365800Gene36
6579565800Poly(A) signal
6474365768CDS36Thymidine kinase
65817658213′end of dPyKmRNA
6601068552Gene37
6874768552Poly(A) signal
6601068535CDS37gH
7022968583Gene38
6858868583Poly(A) signal
7022968604CDS38
7056971305Gene39
7130071305Poly(A) signal
7056971291CDS39
7147675699Gene40
7569475699Poly(A) signal
7147675666CDS40Major nucleocapsid protein
7578376748Gene41
7674376748Poly(A) signal
7578376733CDS41
7797476791Gene42
7678676791Poly(A) signalORF 45+ORF 42
7797476787CDS42
7810580136Gene43
8013180136Poly(A) signal
7810580135CDS43
8029581449Gene44
8144481449Poly(A) signal
8029581386CDS44
8252981474CDS45
8265483253CDS46
8310384635CDS47Protein kinase, tegument protein
8460286257CDS48
8616186429Gene49
8642486429Poly(A) signal
8616186406CDS49
8780786466Gene50
8647186466Poly(A) signal
8780786500CDS50
8780690313CDS51Origin binding protein
9041892771Gene52
9276692771Poly(A) signal
9041892733CDS52
9377592775Gene53
9278092775Poly(A) signal
9377592780CDS53
9590993600CDS54
9592198566CDS55
9849399280Gene56
9927599280Poly(A) signal
9849399224CDS56
9954899309Gene57
9931499309Poly(A) signal
9954899333CDS57Cytoplasmic protein
10019499529CDS58
101141100224CDS59Uracil-DNA glycosylase
101574101092CDS60gL, chaperone for gH
104410102926Gene61
102931102926Poly(A) signal
104410103007CDS61Transactivator, transrepressor
104849104850MiscellaneousUL/IRL boundary
104938104939MiscellaneousIRL/IRS boundary
109061105065Gene62
105071105065Poly(A) signal
109061105129CDS62Transactivator, tegument protein
109693109718Repeat regionReiteration 4
110017110278Origin of replicationOrigin of replication
110507111359Gene63
111352111357Poly(A) signal
110507111343CDS63Tegument protein
111491112072Gene64
112067112072Poly(A) signal
111491112033CDS64
112571112107Gene65
112112112107Poly(A) signal
112571112263CDS65Virion protein
112263112264MiscellaneousIRS/US boundary
112968114172Gene66
114167114172Poly(A) signal
112968114149CDS66Protein kinase
114427115523Gene67
115518115523Poly(A) signal
114427115491CDS67gI
115739117652Gene68
117647117652Poly(A) signal
115739117610CDS68gE
117498117499MiscellaneousUS/TRS boundary
118266117690Gene69
117495117490Poly(A) signal
118266117724CDS69
119250118400Gene70
118405118400Poly(A) signal
119250118414CDS70Tegument protein
119479119742Origin of replicationOrigin of replication
119921120066Repeat regionReiteration R4
120698124694Gene71
124689124694Poly(A) signal
120698124630CDS71Transactivator, tegument protein
  • a CDS, coding sequence; dPyKmRNA, deoxypyrimidine kinase mRNA.

  • b ORF was annotated according to the work of Gomi et al. (20)