TABLE 2.

Partial NTPase, protease, and polymerase regions used in multiple sequence alignmentsa

Calicivirus strainAmino acid/position no.
NTPaseProteasePolymerase
N terminusC terminusN terminusC terminusN terminusC terminus
TulaneR/379L/531G/820Y/940G/977H/1402
MD145R/485I/647G/1023Y/1151G/1199H/1649
ManchesterR/470L/622G/1069Y/1173G/1213H/1659
PECR/454L/606G/1063Y/1167G/1207H/1651
FCV-UrbanaR/474L/638G/1095Y/1197G/1251H/1700
SMSV-1R/580L/734G/1207Y/1309G/1364H/1813
RHDV-FRGR/512L/667G/1117L/1213G/1262H/1711
BEC-NBR/446L/599G/1010Y/1107G/1147H/1603
  • a The N- and C-terminal amino acids and their positions of the partial NS protein sequences that were used in the multiple sequence alignments are listed. The length of the corresponding region for each strain and the consensus length of the alignments are given in Table 4.