TABLE 3.

Most frequently recognized peptides

% Of subjectsaProteinAmino acid positionsSequence% Of subjects with response
≥25p1737-51ASRELERFAVNPGLL36
p1742-58ERFAVNPGLLETSEGCR28
p1777-94SLYNTVATLYCVHQRIEV25
p24133-150WIILGLNKIVRMYSPTSI25
p24164-181YVDRFYKTLRAEQASQEV58
p1566-81RQANFLGKIWPSHKGR28
Nef176-193PEKEVLVWKFDSRLAFHH36
Nef184-199KFDSRLAFHHMARELH25
>10-<25p171-18MGARASVLSGGELDRWEK14
p179-26SGGELDRWEKIRLRPGGK22
p1717-34EKIRLRPGGKKKYKLKHI14
p1732-46KHIVWASRELERFAV11
p1770-86TGSEELRSLYNTVATLY11
p249-26QMVHQAISPRTLNAWVKV11
p2423-40WVKVVEEKAFSPEVIPMF11
p2431-47AFSPEVIPMFSALSEGA11
p24141-158IVRMYSPTSILDIRQGPK17
p24156-173GPKEPFRDYVDRFYKTLR11
p24185-202MTETLLVQNANPDCKTIL11
p1537-52HIAKNCRAPRKKGCWK14
p1572-89GKIWPSHKGRPGNFLQSR17
p1593-112TAPPEESFRFGEETTTPSQK14
p15111-127QKQEPIDKELYPLASLR17
p15118-137KELYPLASLRSLFGNDPSSQ17
Int250-267VIQDNSDIKVVPRRKAKI11
Rev14-30KTVRLIKFLYQSNPPPS11
Nef81-97YKAAVDLSHFLKEKGGL11
Nef104-121QKRQDILDLWVYHTQGYF11
Nef112-127LWVYHTQGYFPDWQNY14
Nef162-178NSLLHPMSLHGMDDPEK11
Nef190-206AFHHMARELHPEYYKDC14
  • a Percentage of studied individuals in whom peptide was recognized.