Table 3.

Informative-site analysis of 92RW009.6

RegionaSubtypeNo. of informative sites in:
Subtype A (U455)Subtype C (C2220)Outgroup (NDK)
1–1037C8328
1085–1940A1754
1986–5288C189927
5293–7238A60913
7254–8431C125512
  • a Numbers mark positions in the four-sequence alignment which includes the untranslated leader sequence (1 to 120), gag (121 to 1537), pol (1370 to 4340), vif (4285 to 4856), vpr (4799 to 5073), the first tat exon (5054 to 5271), vpu (5276 to 5488), env (5406 to 7726), nef (7727 to 8313), and the 3′ LTR (7991 to 8468). Position 8468 does not correspond to the end of the LTR but is the last position in the alignment after gaps have been tossed. The 5′ LTR is not included in the alignment.