Table 1.

Comparative genomic organizations of TTV and CAV

Consensus sequencePosition (length) in:
TTVaCAVb
36-nt stretch3816–38512237–2272
GC-rich region3736–3852 (117 nt)2206–2272 (67 nt)
ORFs
 VP1 (frame 1)589–2898 (2,310 nt, 770 aa)853–2199 (1,347 nt, 449 aa)
 VP2 (frame 2)107–712 (606 nt, 202 aa)380–1027 (648 nt, 216 aa)
 VP3 (frame 3)372–686 (315 nt, 105 aa)486–848 (363 nt, 121 aa)
SP-1 site (GGGCGG/CCGCCC)3834–3839305–310
TATAc (ATATAA, TATATA)85–90323–329
Poly(A)c(AATAAA)3073–30782287–2302
AP-2 sitesd(CCC[AC]N[CG][CG][CG])3766–3773, 3788–3795, 3815–3822, 3837–38442148–2155, 2222–2229, 2237–2244, 2241–2248
ATF/CREB (ACGTCA)3465–3470, 3493–3498, 3584–3589, 3659–3664, 9–14157–162, 178–183, 199–204, 232–237, 253–258
NF-κB (GGG[AG][ACT][CT][CT][CT][ACT])3089–30972249–2258
  • a Based on AB008394 (for nt 1 to 3739) and this study (for nt 3740 to 3852).

  • b Based on M55918.

  • c Only those corresponding to the ORF of VP1 were sited.

  • d Sites overlapped were omitted.