Criterion | Degrees of rotation of: | |||||
---|---|---|---|---|---|---|
Hemagglutinin HA top | gp120 core^{a} | |||||
Z | X | Y | Z | X | Y | |
Carbohydrate maximum | 10 | 60 | −10 | −10 | 10 | −30 (0) |
Conserved residue minimum | −30 | −20 | −50 | 10 (0) | −10 (0) | 20 |
Peak positional difference | 40 | 80 | 40 | 20 (10) | 20 (10) | 50 (20) |
Mean of extrema | −10 | 20 | −30 | 0 (−5) | 0 (5) | −5 (10) |
Absolute mean deviations | ||||||
Of peak rotational differences (X, Y,Z) | 53 | 30 (13) | ||||
From the correct trimer orientation (of the mean of the extrema) | 20 | 11 (5)^{b} |
a Numbers in parentheses are extrema if differences occur when forbidden regions determined from the Fab steric criterion are taken into account.
b The mean deviation here was calculated assuming that the ratio of the mean deviation of the modeling parameters to the mean deviation from the correct trimer obtained in the hemagglutinin test case holds for gp120.