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Table of Contents

January 15, 2014; Volume 88,Issue 2

Editorial

  • Free
    Editorial
    Gems, a New Platform To Highlight Recent Developments in Virology
    Rozanne M. Sandri-Goldin

Spotlight

  • Free
    Spotlight
    Articles of Significant Interest Selected from This Issue by the Editors

Structure and Assembly

  • Structure and Assembly
    A Novel Form of Rotavirus NSP2 and Phosphorylation-Dependent NSP2-NSP5 Interactions Are Associated with Viroplasm Assembly
    Jeanette M. Criglar, Liya Hu, Sue E. Crawford, Joseph M. Hyser, James R. Broughman, B. V. Venkataram Prasad, Mary K. Estes
  • Structure and Assembly
    Crystal Structure of pb9, the Distal Tail Protein of Bacteriophage T5: a Conserved Structural Motif among All Siphophages
    Ali Flayhan, Frédéric M. D. Vellieux, Rudi Lurz, Olivier Maury, Carlos Contreras-Martel, Eric Girard, Pascale Boulanger, Cécile Breyton
  • Structure and Assembly
    Neisseria gonorrhoeae Filamentous Phage NgoΦ6 Is Capable of Infecting a Variety of Gram-Negative Bacteria
    Andrzej Piekarowicz, Aneta Kłyż, Michał Majchrzak, Ewa Szczêsna, Marcin Piechucki, Agnieszka Kwiatek, Timothy K. Maugel, Daniel C. Stein
  • Structure and Assembly
    Adeno-Associated Virus Capsid Proteins May Play a Role in Transcription and Second-Strand Synthesis of Recombinant Genomes
    Maxim Salganik, Fikret Aydemir, Hyun-Joo Nam, Robert McKenna, Mavis Agbandje-McKenna, Nicholas Muzyczka
  • Structure and Assembly
    Autographa californica Nucleopolyhedrovirus Ac76: a Dimeric Type II Integral Membrane Protein That Contains an Inner Nuclear Membrane-Sorting Motif
    Denghui Wei, Yan Wang, Xiaomei Zhang, Zhaoyang Hu, Meijin Yuan, Kai Yang
  • Structure and Assembly
    Newly Identified Minor Phosphorylation Site Threonine-279 of Measles Virus Nucleoprotein Is a Prerequisite for Nucleocapsid Formation
    Akihiro Sugai, Hiroki Sato, Kyoji Hagiwara, Hiroko Kozuka-Hata, Masaaki Oyama, Misako Yoneda, Chieko Kai
  • Structure and Assembly
    Insights into Bacteriophage T5 Structure from Analysis of Its Morphogenesis Genes and Protein Components
    Yvan Zivanovic, Fabrice Confalonieri, Luc Ponchon, Rudi Lurz, Mohamed Chami, Ali Flayhan, Madalena Renouard, Alexis Huet, Paulette Decottignies, Alan R. Davidson, Cécile Breyton, Pascale Boulanger
  • Structure and Assembly
    Retrovirus-Specific Differences in Matrix and Nucleocapsid Protein-Nucleic Acid Interactions: Implications for Genomic RNA Packaging
    Meng Sun, Iwen F. Grigsby, Robert J. Gorelick, Louis M. Mansky, Karin Musier-Forsyth

Genome Replication and Regulation of Viral Gene Expression

  • Genome Replication and Regulation of Viral Gene Expression
    Reselection of a Genomic Upstream Open Reading Frame in Mouse Hepatitis Coronavirus 5′-Untranslated-Region Mutants
    Hung-Yi Wu, Bo-Jhih Guan, Yu-Pin Su, Yi-Hsin Fan, David A. Brian
  • Genome Replication and Regulation of Viral Gene Expression
    The Viral E8^E2C Repressor Limits Productive Replication of Human Papillomavirus 16
    Elke Straub, Marcel Dreer, Jasmin Fertey, Thomas Iftner, Frank Stubenrauch
  • Genome Replication and Regulation of Viral Gene Expression
    Mapping of Betapapillomavirus Human Papillomavirus 5 Transcription and Characterization of Viral-Genome Replication Function
    Eve Sankovski, Andres Männik, Jelizaveta Geimanen, Ene Ustav, Mart Ustav

Genetic Diversity and Evolution

  • Genetic Diversity and Evolution
    Quantitative Modeling of Virus Evolutionary Dynamics and Adaptation in Serial Passages Using Empirically Inferred Fitness Landscapes
    Hyung Jun Woo, Jaques Reifman
  • Genetic Diversity and Evolution
    Evolution and Diversity in Human Herpes Simplex Virus Genomes
    Moriah L. Szpara, Derek Gatherer, Alejandro Ochoa, Benjamin Greenbaum, Aidan Dolan, Rory J. Bowden, Lynn W. Enquist, Matthieu Legendre, Andrew J. Davison
  • Genetic Diversity and Evolution
    Discovery of a Novel Bottlenose Dolphin Coronavirus Reveals a Distinct Species of Marine Mammal Coronavirus in Gammacoronavirus
    Patrick C. Y. Woo, Susanna K. P. Lau, Carol S. F. Lam, Alan K. L. Tsang, Suk-Wai Hui, Rachel Y. Y. Fan, Paolo Martelli, Kwok-Yung Yuen

Virus-Cell Interactions

  • Virus-Cell Interactions
    Inosine-Mediated Modulation of RNA Sensing by Toll-Like Receptor 7 (TLR7) and TLR8
    Soroush T. Sarvestani, Michelle D. Tate, Jessica M. Moffat, Ashley M. Jacobi, Mark A. Behlke, Alistair R. Miller, Simone A. Beckham, Claire E. McCoy, Weisan Chen, Justine D. Mintern, Meredith O'Keeffe, Matthias John, Bryan R. G. Williams, Michael P. Gantier
  • Virus-Cell Interactions
    Hepatitis E Virus Genotype 1 Infection of Swine Kidney Cells In Vitro Is Inhibited at Multiple Levels
    H. T. Nguyen, P. Shukla, U. Torian, K. Faulk, S. U. Emerson
  • Virus-Cell Interactions
    Adenovirus Death Protein (ADP) Is Required for Lytic Infection of Human Lymphocytes
    V. K. Murali, D. A. Ornelles, L. R. Gooding, H. T. Wilms, W. Huang, A. E. Tollefson, W. S. M. Wold, C. Garnett-Benson
  • Virus-Cell Interactions
    Promyelocytic Leukemia Protein Is a Cell-Intrinsic Factor Inhibiting Parvovirus DNA Replication
    Angela M. Mitchell, Matthew L. Hirsch, Chengwen Li, R. Jude Samulski
  • Virus-Cell Interactions
    The Human Alpha Defensin HD5 Neutralizes JC Polyomavirus Infection by Reducing Endoplasmic Reticulum Traffic and Stabilizing the Viral Capsid
    Stephen R. Zins, Christian D. S. Nelson, Melissa S. Maginnis, Rahul Banerjee, Bethany A. O'Hara, Walter J. Atwood
  • Virus-Cell Interactions
    Adenovirus Detection by the cGAS/STING/TBK1 DNA Sensing Cascade
    Eric Lam, Saskia Stein, Erik Falck-Pedersen
  • Virus-Cell Interactions
    Human Herpesvirus 8 Interleukin-6 Contributes to Primary Effusion Lymphoma Cell Viability via Suppression of Proapoptotic Cathepsin D, a Cointeraction Partner of Vitamin K Epoxide Reductase Complex Subunit 1 Variant 2
    Daming Chen, Yang Gao, John Nicholas
  • Virus-Cell Interactions
    Viral MicroRNAs Targeting Virus Genes Promote Virus Infection in Shrimp In Vivo
    Yaodong He, Kai Yang, Xiaobo Zhang
  • Virus-Cell Interactions
    Intracellular Dynamics of HIV Infection
    Janka Petravic, Paula Ellenberg, Ming-Liang Chan, Geza Paukovics, Redmond P. Smyth, Johnson Mak, Miles P. Davenport
  • Virus-Cell Interactions
    Infection of Pericytes In Vitro by Japanese Encephalitis Virus Disrupts the Integrity of the Endothelial Barrier
    Chun-Jung Chen, Yen-Chuan Ou, Jian-Ri Li, Cheng-Yi Chang, Hung-Chuan Pan, Ching-Yi Lai, Su-Lan Liao, Shue-Ling Raung, Chen-Jung Chang
  • Virus-Cell Interactions
    Human Cytomegalovirus Major Immediate Early 1 Protein Targets Host Chromosomes by Docking to the Acidic Pocket on the Nucleosome Surface
    Katrin Mücke, Christina Paulus, Katharina Bernhardt, Katrin Gerrer, Kathrin Schön, Alina Fink, Eva-Maria Sauer, Alexandra Asbach-Nitzsche, Thomas Harwardt, Bärbel Kieninger, Werner Kremer, Hans Robert Kalbitzer, Michael Nevels
  • Virus-Cell Interactions
    Histone Deacetylase Classes I and II Regulate Kaposi's Sarcoma-Associated Herpesvirus Reactivation
    Hye Jin Shin, Jennifer DeCotiis, Mario Giron, Diana Palmeri, David M. Lukac
  • Virus-Cell Interactions
    TMPRSS2 and ADAM17 Cleave ACE2 Differentially and Only Proteolysis by TMPRSS2 Augments Entry Driven by the Severe Acute Respiratory Syndrome Coronavirus Spike Protein
    Adeline Heurich, Heike Hofmann-Winkler, Stefanie Gierer, Thomas Liepold, Olaf Jahn, Stefan Pöhlmann
  • Virus-Cell Interactions
    Wheat streak mosaic virus Infects Systemically despite Extensive Coat Protein Deletions: Identification of Virion Assembly and Cell-to-Cell Movement Determinants
    Satyanarayana Tatineni, Frank Kovacs, Roy French
  • Virus-Cell Interactions
    Inhibition of Bim Enhances Replication of Varicella-Zoster Virus and Delays Plaque Formation in Virus-Infected Cells
    XueQiao Liu, Jeffrey I. Cohen
  • Virus-Cell Interactions
    Virus-Viroid Interactions: Citrus Tristeza Virus Enhances the Accumulation of Citrus Dwarfing Viroid in Mexican Lime via Virus-Encoded Silencing Suppressors
    Pedro Serra, Seyed M. Bani Hashemian, Carmen Fagoaga, Juan Romero, Susana Ruiz-Ruiz, Maria T. Gorris, Edson Bertolini, Núria Duran-Vila

Cellular Response to Infection

  • Cellular Response to Infection
    Autophagy and the Effects of Its Inhibition on Varicella-Zoster Virus Glycoprotein Biosynthesis and Infectivity
    Erin M. Buckingham, John E. Carpenter, Wallen Jackson, Charles Grose
  • Cellular Response to Infection
    Development of Virus-Specific CD4+ and CD8+ Regulatory T Cells Induced by Human Herpesvirus 6 Infection
    Fang Wang, Jing Chi, Guangyong Peng, Feng Zhou, Jinfeng Wang, Lingyun Li, Dongju Feng, Fangyi Xie, Bin Gu, Jian Qin, Yun Chen, Kun Yao
  • Cellular Response to Infection
    Death Receptor-Mediated Apoptotic Signaling Is Activated in the Brain following Infection with West Nile Virus in the Absence of a Peripheral Immune Response
    Penny Clarke, J. Smith Leser, Eamon D. Quick, Kalen R. Dionne, J. David Beckham, Kenneth L. Tyler
  • Cellular Response to Infection
    Increased Sequence Coverage through Combined Targeting of Variant and Conserved Epitopes Correlates with Control of HIV Replication
    Justine Sunshine, Moon Kim, Jonathan M. Carlson, David Heckerman, Julie Czartoski, Stephen A. Migueles, Janine Maenza, M. Juliana McElrath, James I. Mullins, Nicole Frahm

Transformation and Oncogenesis

  • Transformation and Oncogenesis
    Expression Profile of MicroRNAs in Epstein-Barr Virus-Infected AGS Gastric Carcinoma Cells
    Aron R. Marquitz, Anuja Mathur, Pauline E. Chugh, Dirk P. Dittmer, Nancy Raab-Traub

Prions

  • Prions
    Role of Palatine Tonsils as a Prion Entry Site in Classical and Atypical Experimental Sheep Scrapie
    Maria G. Cancedda, Giovanni Di Guardo, Roberto Chiocchetti, Francesca Demontis, Giuseppe Marruchella, Caterina Sorteni, Caterina Maestrale, Alfio Lai, Ciriaco Ligios
  • Prions
    A Cell-Biased Effect of Estrogen in Prion Infection
    Brendan Molloy, Hilary E. M. McMahon

Vaccines and Antiviral Agents

  • Vaccines and Antiviral Agents
    Signaling Pathways in Murine Dendritic Cells That Regulate the Response to Vesicular Stomatitis Virus Vectors That Express Flagellin
    Jason R. Smedberg, Marlena M. Westcott, Maryam Ahmed, Douglas S. Lyles
  • Vaccines and Antiviral Agents
    Inhibition of Arenavirus by A3, a Pyrimidine Biosynthesis Inhibitor
    Emilio Ortiz-Riaño, Nhi Ngo, Stefanie Devito, Dirk Eggink, Joshua Munger, Megan L. Shaw, Juan Carlos de la Torre, Luis Martínez-Sobrido
  • Vaccines and Antiviral Agents
    A Targeted Mutation within the Feline Leukemia Virus (FeLV) Envelope Protein Immunosuppressive Domain To Improve a Canarypox Virus-Vectored FeLV Vaccine
    Géraldine Schlecht-Louf, Marianne Mangeney, Hanane El-Garch, Valérie Lacombe, Hervé Poulet, Thierry Heidmann
  • Vaccines and Antiviral Agents
    Exceptionally Potent and Broadly Cross-Reactive, Bispecific Multivalent HIV-1 Inhibitors Based on Single Human CD4 and Antibody Domains
    Weizao Chen, Yang Feng, Ponraj Prabakaran, Tianlei Ying, Yanping Wang, Jianping Sun, Camila D. S. Macedo, Zhongyu Zhu, Yuxian He, Victoria R. Polonis, Dimiter S. Dimitrov
  • Vaccines and Antiviral Agents
    Novel Neuroprotective GSK-3β Inhibitor Restricts Tat-Mediated HIV-1 Replication
    Irene Guendel, Sergey Iordanskiy, Rachel Van Duyne, Kylene Kehn-Hall, Mohammed Saifuddin, Ravi Das, Elizabeth Jaworski, Gavin C. Sampey, Svetlana Senina, Leonard Shultz, Aarthi Narayanan, Hao Chen, Benjamin Lepene, Chen Zeng, Fatah Kashanchi
  • Vaccines and Antiviral Agents
    Mechanism of HIV-1 Neutralization by Antibodies Targeting a Membrane-Proximal Region of gp41
    Jia Chen, Gary Frey, Hanqin Peng, Sophia Rits-Volloch, Jetta Garrity, Michael S. Seaman, Bing Chen

Pathogenesis and Immunity

  • Open Access
    Pathogenesis and Immunity
    A Lethal Disease Model for Hantavirus Pulmonary Syndrome in Immunosuppressed Syrian Hamsters Infected with Sin Nombre Virus
    Rebecca L. Brocato, Christopher D. Hammerbeck, Todd M. Bell, Jay B. Wells, Laurie A. Queen, Jay W. Hooper
  • Pathogenesis and Immunity
    Characterization of Blockade Antibody Responses in GII.2.1976 Snow Mountain Virus-Infected Subjects
    Jesica Swanstrom, Lisa C. Lindesmith, Eric F. Donaldson, Boyd Yount, Ralph S. Baric
  • Pathogenesis and Immunity
    Exposure to Mimivirus Collagen Promotes Arthritis
    Nikunj Shah, Andreas J. Hülsmeier, Nina Hochhold, Michel Neidhart, Steffen Gay, Thierry Hennet
  • Pathogenesis and Immunity
    Type I Interferon Limits the Capacity of Bluetongue Virus To Infect Hematopoietic Precursors and Dendritic Cells In Vitro and In Vivo
    Teresa Rodríguez-Calvo, José-Manuel Rojas, Verónica Martín, Noemí Sevilla
  • Pathogenesis and Immunity
    Inhibition of NF-κB-Mediated Inflammation in Severe Acute Respiratory Syndrome Coronavirus-Infected Mice Increases Survival
    Marta L. DeDiego, Jose L. Nieto-Torres, Jose A. Regla-Nava, Jose M. Jimenez-Guardeño, Raul Fernandez-Delgado, Craig Fett, Carlos Castaño-Rodriguez, Stanley Perlman, Luis Enjuanes
  • Pathogenesis and Immunity
    New World Simian Foamy Virus Infections In Vivo and In Vitro
    Carolyn R. Stenbak, Karen L. Craig, Sergei B. Ivanov, Xiaoxing Wang, Khanh C. Soliven, Dana L. Jackson, Gustavo A. Gutierrez, Gregory Engel, Lisa Jones-Engel, Maxine L. Linial
  • Pathogenesis and Immunity
    Ifit2 Deficiency Results in Uncontrolled Neurotropic Coronavirus Replication and Enhanced Encephalitis via Impaired Alpha/Beta Interferon Induction in Macrophages
    Niranjan B. Butchi, David R. Hinton, Stephen A. Stohlman, Parul Kapil, Volker Fensterl, Ganes C. Sen, Cornelia C. Bergmann
  • Pathogenesis and Immunity
    Risk Assessment of H2N2 Influenza Viruses from the Avian Reservoir
    Jeremy C. Jones, Tatiana Baranovich, Bindumadhav M. Marathe, Angela F. Danner, Jon P. Seiler, John Franks, Elena A. Govorkova, Scott Krauss, Robert G. Webster
  • Pathogenesis and Immunity
    Equine Tetherin Blocks Retrovirus Release and Its Activity Is Antagonized by Equine Infectious Anemia Virus Envelope Protein
    Xin Yin, Zhe Hu, Qinyong Gu, Xingliang Wu, Yong-Hui Zheng, Ping Wei, Xiaojun Wang
  • Pathogenesis and Immunity
    APOBEC3 Deaminases Induce Hypermutation in Human Papillomavirus 16 DNA upon Beta Interferon Stimulation
    Zhe Wang, Kousho Wakae, Kouichi Kitamura, Satoru Aoyama, Guangyan Liu, Miki Koura, Ahasan M. Monjurul, Iwao Kukimoto, Masamichi Muramatsu
  • Pathogenesis and Immunity
    Immunoprevalence and Immunodominance of HLA-Cw∗0801-Restricted T Cell Response Targeting the Hepatitis B Virus Envelope Transmembrane Region
    Anthony T. Tan, Pimpayao Sodsai, Adeline Chia, Eglantine Moreau, Melissa H. Y. Chng, Christine Y. L. Tham, Zi Zong Ho, Nasirah Banu, Nattiya Hirankarn, Antonio Bertoletti

Letters to the Editor

  • Letters to the Editor
    Novel Hybrid Parvovirus-Like Virus, NIH-CQV/PHV, Contaminants in Silica Column-Based Nucleic Acid Extraction Kits
    Heidi Smuts, Michael Kew, Aabida Khan, Stephen Korsman
  • Letters to the Editor
    Updated Phylogenetic Analysis of Arenaviruses Detected in Boid Snakes
    Rogier Bodewes, Victor Stalin Raj, Marja J. L. Kik, Claudia M. Schapendonk, Bart L. Haagmans, Saskia L. Smits, Albert D. M. E. Osterhaus
  • Letters to the Editor
    Reply to “Updated Phylogenetic Analysis of Arenaviruses Detected in Boid Snakes”
    Udo Hetzel, Tarja Sironen, Pasi Laurinmäki, Lassi Liljeroos, Aino Patjas, Heikki Henttonen, Antti Vaheri, Annette Artelt, Anja Kipar, Sarah J. Butcher, Olli Vapalahti, Jussi Hepojoki

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Journal of Virology: 88 (2)

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