Journal of Virology: 88 (2)

January 15, 2014; Volume 88,Issue 2

Editorial

Free

Editorial
Gems, a New Platform To Highlight Recent Developments in Virology
Rozanne M. Sandri-Goldin

Spotlight

Free

Spotlight
Articles of Significant Interest Selected from This Issue by the Editors

Structure and Assembly

Structure and Assembly
A Novel Form of Rotavirus NSP2 and Phosphorylation-Dependent NSP2-NSP5 Interactions Are Associated with Viroplasm Assembly
Jeanette M. Criglar, Liya Hu, Sue E. Crawford, Joseph M. Hyser, James R. Broughman, B. V. Venkataram Prasad, Mary K. Estes
Structure and Assembly
Crystal Structure of pb9, the Distal Tail Protein of Bacteriophage T5: a Conserved Structural Motif among All Siphophages
Ali Flayhan, Frédéric M. D. Vellieux, Rudi Lurz, Olivier Maury, Carlos Contreras-Martel, Eric Girard, Pascale Boulanger, Cécile Breyton
Structure and Assembly
Neisseria gonorrhoeae Filamentous Phage NgoΦ6 Is Capable of Infecting a Variety of Gram-Negative Bacteria
Andrzej Piekarowicz, Aneta Kłyż, Michał Majchrzak, Ewa Szczêsna, Marcin Piechucki, Agnieszka Kwiatek, Timothy K. Maugel, Daniel C. Stein
Structure and Assembly
Adeno-Associated Virus Capsid Proteins May Play a Role in Transcription and Second-Strand Synthesis of Recombinant Genomes
Maxim Salganik, Fikret Aydemir, Hyun-Joo Nam, Robert McKenna, Mavis Agbandje-McKenna, Nicholas Muzyczka
Structure and Assembly
Autographa californica Nucleopolyhedrovirus Ac76: a Dimeric Type II Integral Membrane Protein That Contains an Inner Nuclear Membrane-Sorting Motif
Denghui Wei, Yan Wang, Xiaomei Zhang, Zhaoyang Hu, Meijin Yuan, Kai Yang
Structure and Assembly
Newly Identified Minor Phosphorylation Site Threonine-279 of Measles Virus Nucleoprotein Is a Prerequisite for Nucleocapsid Formation
Akihiro Sugai, Hiroki Sato, Kyoji Hagiwara, Hiroko Kozuka-Hata, Masaaki Oyama, Misako Yoneda, Chieko Kai
Structure and Assembly
Insights into Bacteriophage T5 Structure from Analysis of Its Morphogenesis Genes and Protein Components
Yvan Zivanovic, Fabrice Confalonieri, Luc Ponchon, Rudi Lurz, Mohamed Chami, Ali Flayhan, Madalena Renouard, Alexis Huet, Paulette Decottignies, Alan R. Davidson, Cécile Breyton, Pascale Boulanger
Structure and Assembly
Retrovirus-Specific Differences in Matrix and Nucleocapsid Protein-Nucleic Acid Interactions: Implications for Genomic RNA Packaging
Meng Sun, Iwen F. Grigsby, Robert J. Gorelick, Louis M. Mansky, Karin Musier-Forsyth

Genome Replication and Regulation of Viral Gene Expression

Genome Replication and Regulation of Viral Gene Expression
Reselection of a Genomic Upstream Open Reading Frame in Mouse Hepatitis Coronavirus 5′-Untranslated-Region Mutants
Hung-Yi Wu, Bo-Jhih Guan, Yu-Pin Su, Yi-Hsin Fan, David A. Brian
Genome Replication and Regulation of Viral Gene Expression
The Viral E8^E2C Repressor Limits Productive Replication of Human Papillomavirus 16
Elke Straub, Marcel Dreer, Jasmin Fertey, Thomas Iftner, Frank Stubenrauch
Genome Replication and Regulation of Viral Gene Expression
Mapping of Betapapillomavirus Human Papillomavirus 5 Transcription and Characterization of Viral-Genome Replication Function
Eve Sankovski, Andres Männik, Jelizaveta Geimanen, Ene Ustav, Mart Ustav

Genetic Diversity and Evolution

Genetic Diversity and Evolution
Quantitative Modeling of Virus Evolutionary Dynamics and Adaptation in Serial Passages Using Empirically Inferred Fitness Landscapes
Hyung Jun Woo, Jaques Reifman
Genetic Diversity and Evolution
Evolution and Diversity in Human Herpes Simplex Virus Genomes
Moriah L. Szpara, Derek Gatherer, Alejandro Ochoa, Benjamin Greenbaum, Aidan Dolan, Rory J. Bowden, Lynn W. Enquist, Matthieu Legendre, Andrew J. Davison
Genetic Diversity and Evolution
Discovery of a Novel Bottlenose Dolphin Coronavirus Reveals a Distinct Species of Marine Mammal Coronavirus in Gammacoronavirus
Patrick C. Y. Woo, Susanna K. P. Lau, Carol S. F. Lam, Alan K. L. Tsang, Suk-Wai Hui, Rachel Y. Y. Fan, Paolo Martelli, Kwok-Yung Yuen

Virus-Cell Interactions

Virus-Cell Interactions
Inosine-Mediated Modulation of RNA Sensing by Toll-Like Receptor 7 (TLR7) and TLR8
Soroush T. Sarvestani, Michelle D. Tate, Jessica M. Moffat, Ashley M. Jacobi, Mark A. Behlke, Alistair R. Miller, Simone A. Beckham, Claire E. McCoy, Weisan Chen, Justine D. Mintern, Meredith O'Keeffe, Matthias John, Bryan R. G. Williams, Michael P. Gantier
Virus-Cell Interactions
Hepatitis E Virus Genotype 1 Infection of Swine Kidney Cells In Vitro Is Inhibited at Multiple Levels
H. T. Nguyen, P. Shukla, U. Torian, K. Faulk, S. U. Emerson
Virus-Cell Interactions
Adenovirus Death Protein (ADP) Is Required for Lytic Infection of Human Lymphocytes
V. K. Murali, D. A. Ornelles, L. R. Gooding, H. T. Wilms, W. Huang, A. E. Tollefson, W. S. M. Wold, C. Garnett-Benson
Virus-Cell Interactions
Promyelocytic Leukemia Protein Is a Cell-Intrinsic Factor Inhibiting Parvovirus DNA Replication
Angela M. Mitchell, Matthew L. Hirsch, Chengwen Li, R. Jude Samulski
Virus-Cell Interactions
The Human Alpha Defensin HD5 Neutralizes JC Polyomavirus Infection by Reducing Endoplasmic Reticulum Traffic and Stabilizing the Viral Capsid
Stephen R. Zins, Christian D. S. Nelson, Melissa S. Maginnis, Rahul Banerjee, Bethany A. O'Hara, Walter J. Atwood
Virus-Cell Interactions
Adenovirus Detection by the cGAS/STING/TBK1 DNA Sensing Cascade
Eric Lam, Saskia Stein, Erik Falck-Pedersen
Virus-Cell Interactions
Human Herpesvirus 8 Interleukin-6 Contributes to Primary Effusion Lymphoma Cell Viability via Suppression of Proapoptotic Cathepsin D, a Cointeraction Partner of Vitamin K Epoxide Reductase Complex Subunit 1 Variant 2
Daming Chen, Yang Gao, John Nicholas
Virus-Cell Interactions
Viral MicroRNAs Targeting Virus Genes Promote Virus Infection in Shrimp In Vivo
Yaodong He, Kai Yang, Xiaobo Zhang
Virus-Cell Interactions
Intracellular Dynamics of HIV Infection
Janka Petravic, Paula Ellenberg, Ming-Liang Chan, Geza Paukovics, Redmond P. Smyth, Johnson Mak, Miles P. Davenport
Virus-Cell Interactions
Infection of Pericytes In Vitro by Japanese Encephalitis Virus Disrupts the Integrity of the Endothelial Barrier
Chun-Jung Chen, Yen-Chuan Ou, Jian-Ri Li, Cheng-Yi Chang, Hung-Chuan Pan, Ching-Yi Lai, Su-Lan Liao, Shue-Ling Raung, Chen-Jung Chang
Virus-Cell Interactions
Human Cytomegalovirus Major Immediate Early 1 Protein Targets Host Chromosomes by Docking to the Acidic Pocket on the Nucleosome Surface
Katrin Mücke, Christina Paulus, Katharina Bernhardt, Katrin Gerrer, Kathrin Schön, Alina Fink, Eva-Maria Sauer, Alexandra Asbach-Nitzsche, Thomas Harwardt, Bärbel Kieninger, Werner Kremer, Hans Robert Kalbitzer, Michael Nevels
Virus-Cell Interactions
Histone Deacetylase Classes I and II Regulate Kaposi's Sarcoma-Associated Herpesvirus Reactivation
Hye Jin Shin, Jennifer DeCotiis, Mario Giron, Diana Palmeri, David M. Lukac
Virus-Cell Interactions
TMPRSS2 and ADAM17 Cleave ACE2 Differentially and Only Proteolysis by TMPRSS2 Augments Entry Driven by the Severe Acute Respiratory Syndrome Coronavirus Spike Protein
Adeline Heurich, Heike Hofmann-Winkler, Stefanie Gierer, Thomas Liepold, Olaf Jahn, Stefan Pöhlmann
Virus-Cell Interactions
Wheat streak mosaic virus Infects Systemically despite Extensive Coat Protein Deletions: Identification of Virion Assembly and Cell-to-Cell Movement Determinants
Satyanarayana Tatineni, Frank Kovacs, Roy French
Virus-Cell Interactions
Inhibition of Bim Enhances Replication of Varicella-Zoster Virus and Delays Plaque Formation in Virus-Infected Cells
XueQiao Liu, Jeffrey I. Cohen
Virus-Cell Interactions
Virus-Viroid Interactions: Citrus Tristeza Virus Enhances the Accumulation of Citrus Dwarfing Viroid in Mexican Lime via Virus-Encoded Silencing Suppressors
Pedro Serra, Seyed M. Bani Hashemian, Carmen Fagoaga, Juan Romero, Susana Ruiz-Ruiz, Maria T. Gorris, Edson Bertolini, Núria Duran-Vila

Cellular Response to Infection

Cellular Response to Infection
Autophagy and the Effects of Its Inhibition on Varicella-Zoster Virus Glycoprotein Biosynthesis and Infectivity
Erin M. Buckingham, John E. Carpenter, Wallen Jackson, Charles Grose
Cellular Response to Infection
Development of Virus-Specific CD4⁺ and CD8⁺ Regulatory T Cells Induced by Human Herpesvirus 6 Infection
Fang Wang, Jing Chi, Guangyong Peng, Feng Zhou, Jinfeng Wang, Lingyun Li, Dongju Feng, Fangyi Xie, Bin Gu, Jian Qin, Yun Chen, Kun Yao
Cellular Response to Infection
Death Receptor-Mediated Apoptotic Signaling Is Activated in the Brain following Infection with West Nile Virus in the Absence of a Peripheral Immune Response
Penny Clarke, J. Smith Leser, Eamon D. Quick, Kalen R. Dionne, J. David Beckham, Kenneth L. Tyler
Cellular Response to Infection
Increased Sequence Coverage through Combined Targeting of Variant and Conserved Epitopes Correlates with Control of HIV Replication
Justine Sunshine, Moon Kim, Jonathan M. Carlson, David Heckerman, Julie Czartoski, Stephen A. Migueles, Janine Maenza, M. Juliana McElrath, James I. Mullins, Nicole Frahm

Transformation and Oncogenesis

Transformation and Oncogenesis
Expression Profile of MicroRNAs in Epstein-Barr Virus-Infected AGS Gastric Carcinoma Cells
Aron R. Marquitz, Anuja Mathur, Pauline E. Chugh, Dirk P. Dittmer, Nancy Raab-Traub

Prions

Prions
Role of Palatine Tonsils as a Prion Entry Site in Classical and Atypical Experimental Sheep Scrapie
Maria G. Cancedda, Giovanni Di Guardo, Roberto Chiocchetti, Francesca Demontis, Giuseppe Marruchella, Caterina Sorteni, Caterina Maestrale, Alfio Lai, Ciriaco Ligios
Prions
A Cell-Biased Effect of Estrogen in Prion Infection
Brendan Molloy, Hilary E. M. McMahon

Vaccines and Antiviral Agents

Vaccines and Antiviral Agents
Signaling Pathways in Murine Dendritic Cells That Regulate the Response to Vesicular Stomatitis Virus Vectors That Express Flagellin
Jason R. Smedberg, Marlena M. Westcott, Maryam Ahmed, Douglas S. Lyles
Vaccines and Antiviral Agents
Inhibition of Arenavirus by A3, a Pyrimidine Biosynthesis Inhibitor
Emilio Ortiz-Riaño, Nhi Ngo, Stefanie Devito, Dirk Eggink, Joshua Munger, Megan L. Shaw, Juan Carlos de la Torre, Luis Martínez-Sobrido
Vaccines and Antiviral Agents
A Targeted Mutation within the Feline Leukemia Virus (FeLV) Envelope Protein Immunosuppressive Domain To Improve a Canarypox Virus-Vectored FeLV Vaccine
Géraldine Schlecht-Louf, Marianne Mangeney, Hanane El-Garch, Valérie Lacombe, Hervé Poulet, Thierry Heidmann
Vaccines and Antiviral Agents
Exceptionally Potent and Broadly Cross-Reactive, Bispecific Multivalent HIV-1 Inhibitors Based on Single Human CD4 and Antibody Domains
Weizao Chen, Yang Feng, Ponraj Prabakaran, Tianlei Ying, Yanping Wang, Jianping Sun, Camila D. S. Macedo, Zhongyu Zhu, Yuxian He, Victoria R. Polonis, Dimiter S. Dimitrov
Vaccines and Antiviral Agents
Novel Neuroprotective GSK-3β Inhibitor Restricts Tat-Mediated HIV-1 Replication
Irene Guendel, Sergey Iordanskiy, Rachel Van Duyne, Kylene Kehn-Hall, Mohammed Saifuddin, Ravi Das, Elizabeth Jaworski, Gavin C. Sampey, Svetlana Senina, Leonard Shultz, Aarthi Narayanan, Hao Chen, Benjamin Lepene, Chen Zeng, Fatah Kashanchi
Vaccines and Antiviral Agents
Mechanism of HIV-1 Neutralization by Antibodies Targeting a Membrane-Proximal Region of gp41
Jia Chen, Gary Frey, Hanqin Peng, Sophia Rits-Volloch, Jetta Garrity, Michael S. Seaman, Bing Chen

Pathogenesis and Immunity

Open Access

Pathogenesis and Immunity
A Lethal Disease Model for Hantavirus Pulmonary Syndrome in Immunosuppressed Syrian Hamsters Infected with Sin Nombre Virus
Rebecca L. Brocato, Christopher D. Hammerbeck, Todd M. Bell, Jay B. Wells, Laurie A. Queen, Jay W. Hooper
Pathogenesis and Immunity
Characterization of Blockade Antibody Responses in GII.2.1976 Snow Mountain Virus-Infected Subjects
Jesica Swanstrom, Lisa C. Lindesmith, Eric F. Donaldson, Boyd Yount, Ralph S. Baric
Pathogenesis and Immunity
Exposure to Mimivirus Collagen Promotes Arthritis
Nikunj Shah, Andreas J. Hülsmeier, Nina Hochhold, Michel Neidhart, Steffen Gay, Thierry Hennet
Pathogenesis and Immunity
Type I Interferon Limits the Capacity of Bluetongue Virus To Infect Hematopoietic Precursors and Dendritic Cells In Vitro and In Vivo
Teresa Rodríguez-Calvo, José-Manuel Rojas, Verónica Martín, Noemí Sevilla
Pathogenesis and Immunity
Inhibition of NF-κB-Mediated Inflammation in Severe Acute Respiratory Syndrome Coronavirus-Infected Mice Increases Survival
Marta L. DeDiego, Jose L. Nieto-Torres, Jose A. Regla-Nava, Jose M. Jimenez-Guardeño, Raul Fernandez-Delgado, Craig Fett, Carlos Castaño-Rodriguez, Stanley Perlman, Luis Enjuanes
Pathogenesis and Immunity
New World Simian Foamy Virus Infections In Vivo and In Vitro
Carolyn R. Stenbak, Karen L. Craig, Sergei B. Ivanov, Xiaoxing Wang, Khanh C. Soliven, Dana L. Jackson, Gustavo A. Gutierrez, Gregory Engel, Lisa Jones-Engel, Maxine L. Linial
Pathogenesis and Immunity
Ifit2 Deficiency Results in Uncontrolled Neurotropic Coronavirus Replication and Enhanced Encephalitis via Impaired Alpha/Beta Interferon Induction in Macrophages
Niranjan B. Butchi, David R. Hinton, Stephen A. Stohlman, Parul Kapil, Volker Fensterl, Ganes C. Sen, Cornelia C. Bergmann
Pathogenesis and Immunity
Risk Assessment of H2N2 Influenza Viruses from the Avian Reservoir
Jeremy C. Jones, Tatiana Baranovich, Bindumadhav M. Marathe, Angela F. Danner, Jon P. Seiler, John Franks, Elena A. Govorkova, Scott Krauss, Robert G. Webster
Pathogenesis and Immunity
Equine Tetherin Blocks Retrovirus Release and Its Activity Is Antagonized by Equine Infectious Anemia Virus Envelope Protein
Xin Yin, Zhe Hu, Qinyong Gu, Xingliang Wu, Yong-Hui Zheng, Ping Wei, Xiaojun Wang
Pathogenesis and Immunity
APOBEC3 Deaminases Induce Hypermutation in Human Papillomavirus 16 DNA upon Beta Interferon Stimulation
Zhe Wang, Kousho Wakae, Kouichi Kitamura, Satoru Aoyama, Guangyan Liu, Miki Koura, Ahasan M. Monjurul, Iwao Kukimoto, Masamichi Muramatsu
Pathogenesis and Immunity
Immunoprevalence and Immunodominance of HLA-Cw∗0801-Restricted T Cell Response Targeting the Hepatitis B Virus Envelope Transmembrane Region
Anthony T. Tan, Pimpayao Sodsai, Adeline Chia, Eglantine Moreau, Melissa H. Y. Chng, Christine Y. L. Tham, Zi Zong Ho, Nasirah Banu, Nattiya Hirankarn, Antonio Bertoletti

Letters to the Editor

Letters to the Editor
Novel Hybrid Parvovirus-Like Virus, NIH-CQV/PHV, Contaminants in Silica Column-Based Nucleic Acid Extraction Kits
Heidi Smuts, Michael Kew, Aabida Khan, Stephen Korsman
Letters to the Editor
Updated Phylogenetic Analysis of Arenaviruses Detected in Boid Snakes
Rogier Bodewes, Victor Stalin Raj, Marja J. L. Kik, Claudia M. Schapendonk, Bart L. Haagmans, Saskia L. Smits, Albert D. M. E. Osterhaus
Letters to the Editor
Reply to “Updated Phylogenetic Analysis of Arenaviruses Detected in Boid Snakes”
Udo Hetzel, Tarja Sironen, Pasi Laurinmäki, Lassi Liljeroos, Aino Patjas, Heikki Henttonen, Antti Vaheri, Annette Artelt, Anja Kipar, Sarah J. Butcher, Olli Vapalahti, Jussi Hepojoki

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Table of Contents

Editorial

Spotlight

Structure and Assembly

Genome Replication and Regulation of Viral Gene Expression

Genetic Diversity and Evolution

Virus-Cell Interactions

Cellular Response to Infection

Transformation and Oncogenesis

Prions

Vaccines and Antiviral Agents

Pathogenesis and Immunity

Letters to the Editor

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