JVI -- Table of Contents (January 15 2005, 79 [2])

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Contents: January 2005, Volume 79, Issue 2

       Minireviews

       Replication

       Vaccines and Antiviral Agents

       Recombination and Evolution

       Virus-Cell Interactions

       Gene Therapy

       Pathogenesis and Immunity

       Structure and Assembly

       Transformation and Oncogenesis

       Letters to the Editor

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Table of Contents

To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Minireviews:

Basic Statistical Considerations in Virological Experiments
Barbra A. Richardson and Julie Overbaugh
J. Virol. January 2005 79: 669-676;
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Replication:

Factor-Independent Assembly of Elongation-Competent Ribosomes by an Internal Ribosome Entry Site Located in an RNA Virus That Infects Penaeid Shrimp
Randal C. Cevallos and Peter Sarnow
J. Virol. January 2005 79: 677-683;
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A Complex Zinc Finger Controls the Enzymatic Activities of Nidovirus Helicases
Anja Seybert, Clara C. Posthuma, Leonie C. van Dinten, Eric J. Snijder, Alexander E. Gorbalenya, and John Ziebuhr
J. Virol. January 2005 79: 696-704;
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In Vitro and In Vivo Relevance of Infectious Laryngotracheitis Virus gJ Proteins That Are Expressed from Spliced and Nonspliced mRNAs
Walter Fuchs, Dorothee Wiesner, Jutta Veits, Jens P. Teifke, and Thomas C. Mettenleiter
J. Virol. January 2005 79: 705-716;
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Involvement of Influenza Virus PA Subunit in Assembly of Functional RNA Polymerase Complexes
Atsushi Kawaguchi, Tadasuke Naito, and Kyosuke Nagata
J. Virol. January 2005 79: 732-744;
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Functional Analysis of Vif Protein Shows Less Restriction of Human Immunodeficiency Virus Type 2 by APOBEC3G
Ana Clara Ribeiro, Alexandra Maia e Silva, Mariana Santa-Marta, Ana Pombo, José Moniz-Pereira, Joao Goncalves, and Isabel Barahona
J. Virol. January 2005 79: 823-833;
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Directed Evolution of Retrovirus Envelope Protein Cytoplasmic Tails Guided by Functional Incorporation into Lentivirus Particles
Christoph A. Merten, Jörn Stitz, Gundula Braun, Eric M. Poeschla, Klaus Cichutek, and Christian J. Buchholz
J. Virol. January 2005 79: 834-840;
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Efficient Rescue of Hepatitis C Virus RNA Replication by trans-Complementation with Nonstructural Protein 5A
Nicole Appel, Ulrike Herian, and Ralf Bartenschlager
J. Virol. January 2005 79: 896-909;
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Covalent Modification of Human Immunodeficiency Virus Type 1 p6 by SUMO-1
Cagan Gurer, Lionel Berthoux, and Jeremy Luban
J. Virol. January 2005 79: 910-917;
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The Red Clover Necrotic Mosaic Virus RNA2 trans-Activator Is Also a cis-Acting RNA2 Replication Element
Masahiro Tatsuta, Hiroyuki Mizumoto, Masanori Kaido, Kazuyuki Mise, and Tetsuro Okuno
J. Virol. January 2005 79: 978-986;
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Analysis of Translational Initiation in Coxsackievirus B3 Suggests an Alternative Explanation for the High Frequency of R₊₄ in the Eukaryotic Consensus Motif
Stephanie Harkins, Christopher T. Cornell, and J. Lindsay Whitton
J. Virol. January 2005 79: 987-996;
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In Vitro and In Vivo Mutational Analysis of the 3'-Terminal Regions of Hepatitis E Virus Genomes and Replicons
Judith Graff, Hanh Nguyen, Chaiyan Kasorndorkbua, Patrick G. Halbur, Marisa St. Claire, Robert H. Purcell, and Suzanne U. Emerson
J. Virol. January 2005 79: 1017-1026;
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Human N-Myristoyltransferases Form Stable Complexes with Lentiviral Nef and Other Viral and Cellular Substrate Proteins
Brian T. Hill and Jacek Skowronski
J. Virol. January 2005 79: 1133-1141;
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Mass Spectroscopic Characterization of the Coronavirus Infectious Bronchitis Virus Nucleoprotein and Elucidation of the Role of Phosphorylation in RNA Binding by Using Surface Plasmon Resonance
Hongying Chen, Andrew Gill, Brian K. Dove, Stevan R. Emmett, C. Fred Kemp, Mark A. Ritchie, Michael Dee, and Julian A. Hiscox
J. Virol. January 2005 79: 1164-1179;
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Molecular Determinants for Subcellular Localization of Hepatitis C Virus Core Protein
Ryosuke Suzuki, Shinichiro Sakamoto, Takeya Tsutsumi, Akiko Rikimaru, Keiko Tanaka, Takashi Shimoike, Kohji Moriishi, Takuya Iwasaki, Kiyohisa Mizumoto, Yoshiharu Matsuura, Tatsuo Miyamura, and Tetsuro Suzuki
J. Virol. January 2005 79: 1271-1281;
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Productive Replication of Human Adenovirus Type 5 in Canine Cells
Vladimir V. Ternovoi, Long P. Le, Natalya Belousova, Bruce F. Smith, Gene P. Siegal, and David T. Curiel
J. Virol. January 2005 79: 1308-1311;
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Vaccines and Antiviral Agents:

Analysis of Pigtail Macaque Major Histocompatibility Complex Class I Molecules Presenting Immunodominant Simian Immunodeficiency Virus Epitopes
Miranda Z. Smith, C. Jane Dale, Robert De Rose, Ivan Stratov, Caroline S. Fernandez, Andrew G. Brooks, Jason Weinfurter, Kendall Krebs, Cara Riek, David I. Watkins, David H. O'Connor, and Stephen J. Kent
J. Virol. January 2005 79: 684-695;
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Virus-Like Particles as Carriers for T-Cell Epitopes: Limited Inhibition of T-Cell Priming by Carrier-Specific Antibodies
Christiane Ruedl, Katrin Schwarz, Andrea Jegerlehner, Tazio Storni, Vania Manolova, and Martin F. Bachmann
J. Virol. January 2005 79: 717-724;
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Mutations Conferring Resistance to Human Immunodeficiency Virus Type 1 Fusion Inhibitors Are Restricted by gp41 and Rev-Responsive Element Functions
Daisuke Nameki, Eiichi Kodama, Mieko Ikeuchi, Naoto Mabuchi, Akira Otaka, Hirokazu Tamamura, Mutsuhito Ohno, Nobutaka Fujii, and Masao Matsuoka
J. Virol. January 2005 79: 764-770;
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Neutralizing Antibodies Elicited by Immunization of Monkeys with DNA Plasmids and Recombinant Adenoviral Vectors Expressing Human Immunodeficiency Virus Type 1 Proteins
John R. Mascola, Anna Sambor, Kristin Beaudry, Sampa Santra, Brent Welcher, Mark K. Louder, Thomas C. VanCott, Yue Huang, Bimal K. Chakrabarti, Wing-Pui Kong, Zhi-Yong Yang, Ling Xu, David C. Montefiori, Gary J. Nabel, and Norman L. Letvin
J. Virol. January 2005 79: 771-779;
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Quantification of the Effects on Viral DNA Synthesis of Reverse Transcriptase Mutations Conferring Human Immunodeficiency Virus Type 1 Resistance to Nucleoside Analogues
Francine Bouchonnet, Elisabeth Dam, Fabrizio Mammano, Vaea de Soultrait, Gaëlle Henneré, Henri Benech, François Clavel, and Allan J. Hance
J. Virol. January 2005 79: 812-822;
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Novel Adeno-Associated Virus Vector Vaccine Restricts Replication of Simian Immunodeficiency Virus in Macaques
Philip R. Johnson, Bruce C. Schnepp, Mary J. Connell, Daniela Rohne, Suzanne Robinson, Georgia R. Krivulka, Carol I. Lord, Rebekah Zinn, David C. Montefiori, Norman L. Letvin, and K. Reed Clark
J. Virol. January 2005 79: 955-965;
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Poliovirus Escape from RNA Interference: Short Interfering RNA-Target Recognition and Implications for Therapeutic Approaches
Leonid Gitlin, Jeffrey K. Stone, and Raul Andino
J. Virol. January 2005 79: 1027-1035;
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Antigenicity and Immunogenicity of a Synthetic Human Immunodeficiency Virus Type 1 Group M Consensus Envelope Glycoprotein
Feng Gao, Eric A. Weaver, Zhongjing Lu, Yingying Li, Hua-Xin Liao, Benjiang Ma, S. Munir Alam, Richard M. Scearce, Laura L. Sutherland, Jae-Sung Yu, Julie M. Decker, George M. Shaw, David C. Montefiori, Bette T. Korber, Beatrice H. Hahn, and Barton F. Haynes
J. Virol. January 2005 79: 1154-1163;
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Recombination and Evolution:

Integrating Reptilian Herpesviruses into the Family Herpesviridae
Duncan J. McGeoch and Derek Gatherer
J. Virol. January 2005 79: 725-731;
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Selection for Virulent Dengue Viruses Occurs in Humans and Mosquitoes
Raymond Cologna, Philip M. Armstrong, and Rebeca Rico-Hesse
J. Virol. January 2005 79: 853-859;
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CpG Methylation Directly Regulates Transcriptional Activity of the Human Endogenous Retrovirus Family HERV-K(HML-2)
Laurence Lavie, Milena Kitova, Esther Maldener, Eckart Meese, and Jens Mayer
J. Virol. January 2005 79: 876-883;
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Genome of Deerpox Virus
C. L. Afonso, G. Delhon, E. R. Tulman, Z. Lu, A. Zsak, V. M. Becerra, L. Zsak, G. F. Kutish, and D. L. Rock
J. Virol. January 2005 79: 966-977;
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Spread of Vaccine-Derived Poliovirus from a Paralytic Case in an Immunodeficient Child: an Insight into the Natural Evolution of Oral Polio Vaccine
E. A. Cherkasova, M. L. Yakovenko, G. V. Rezapkin, E. A. Korotkova, O. E. Ivanova, T. P. Eremeeva, L. I. Krasnoproshina, N. I. Romanenkova, N. R. Rozaeva, L. Sirota, V. I. Agol, and K. M. Chumakov
J. Virol. January 2005 79: 1062-1070;
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Genomic Variation of the Fibropapilloma-Associated Marine Turtle Herpesvirus across Seven Geographic Areas and Three Host Species
Rebecca J. Greenblatt, Sandra L. Quackenbush, Rufina N. Casey, Joel Rovnak, George H. Balazs, Thierry M. Work, James W. Casey, and Claudia A. Sutton
J. Virol. January 2005 79: 1125-1132;
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Simian Immunodeficiency Virus Infection in Wild-Caught Chimpanzees from Cameroon
Eric Nerrienet, Mario L. Santiago, Yacouba Foupouapouognigni, Elizabeth Bailes, Nicolas I. Mundy, Bernadette Njinku, Anfumbom Kfutwah, Michaela C. Muller-Trutwin, Françoise Barre-Sinoussi, George M. Shaw, Paul M. Sharp, Beatrice H. Hahn, and Ahidjo Ayouba
J. Virol. January 2005 79: 1312-1319;
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Virus-Cell Interactions:

The Epstein-Barr Virus Protein BMRF1 Activates Gastrin Transcription
Elizabeth A. Holley-Guthrie, William T. Seaman, Prasanna Bhende, Juanita L. Merchant, and Shannon C. Kenney
J. Virol. January 2005 79: 745-755;
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Structural Requirements for Recognition of the Human Immunodeficiency Virus Type 1 Core during Host Restriction in Owl Monkey Cells
Brett M. Forshey, Jiong Shi, and Christopher Aiken
J. Virol. January 2005 79: 869-875;
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Studies of Ebola Virus Glycoprotein-Mediated Entry and Fusion by Using Pseudotyped Human Immunodeficiency Virus Type 1 Virions: Involvement of Cytoskeletal Proteins and Enhancement by Tumor Necrosis Factor Alpha
Akihito Yonezawa, Marielle Cavrois, and Warner C. Greene
J. Virol. January 2005 79: 918-926;
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Opening of Size-Selective Pores in Endosomes during Human Rhinovirus Serotype 2 In Vivo Uncoating Monitored by Single-Organelle Flow Analysis
Marianne Brabec, Daniela Schober, Ernst Wagner, Nora Bayer, Robert F. Murphy, Dieter Blaas, and Renate Fuchs
J. Virol. January 2005 79: 1008-1016;
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Deletion of Penton RGD Motifs Affects the Efficiency of both the Internalization and the Endosome Escape of Viral Particles Containing Adenovirus Serotype 5 or 35 Fiber Knobs
Dmitry M. Shayakhmetov, Andrea M. Eberly, Zong-Yi Li, and André Lieber
J. Virol. January 2005 79: 1053-1061;
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Vaccinia Virus F1L Protein Is a Tail-Anchored Protein That Functions at the Mitochondria To Inhibit Apoptosis
Tara L. Stewart, Shawn T. Wasilenko, and Michele Barry
J. Virol. January 2005 79: 1084-1098;
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Inhibition of Human Papillomavirus Type 16 E7 Phosphorylation by the S100 MRP-8/14 Protein Complex
Sharof Tugizov, Jennifer Berline, Rossana Herrera, Maria Elena Penaranda, Mayumi Nakagawa, and Joel Palefsky
J. Virol. January 2005 79: 1099-1112;
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Decreased Dependence on Receptor Recognition for the Fusion Promotion Activity of L289A-Mutated Newcastle Disease Virus Fusion Protein Correlates with a Monoclonal Antibody-Detected Conformational Change
Jianrong Li, Vanessa R. Melanson, Anne M. Mirza, and Ronald M. Iorio
J. Virol. January 2005 79: 1180-1190;
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Kaposi's Sarcoma-Associated Herpesvirus Modulates Microtubule Dynamics via RhoA-GTP-Diaphanous 2 Signaling and Utilizes the Dynein Motors To Deliver Its DNA to the Nucleus
Pramod P. Naranatt, Harinivas H. Krishnan, Marilyn S. Smith, and Bala Chandran
J. Virol. January 2005 79: 1191-1206;
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Phosphorylation Site Mutations Affect Herpes Simplex Virus Type 1 ICP0 Function
David J. Davido, William F. von Zagorski, William S. Lane, and Priscilla A. Schaffer
J. Virol. January 2005 79: 1232-1243;
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Potential Nectin-1 Binding Site on Herpes Simplex Virus Glycoprotein D
Sarah A. Connolly, Daniel J. Landsburg, Andrea Carfi, J. Charles Whitbeck, Yi Zuo, Don C. Wiley, Gary H. Cohen, and Roselyn J. Eisenberg
J. Virol. January 2005 79: 1282-1295;
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Terminal Differentiation into Plasma Cells Initiates the Replicative Cycle of Epstein-Barr Virus In Vivo
Lauri L. Laichalk and David A. Thorley-Lawson
J. Virol. January 2005 79: 1296-1307;
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Gene Therapy:

Efficient Functional Pseudotyping of Oncoretroviral and Lentiviral Vectors by Venezuelan Equine Encephalitis Virus Envelope Proteins
Andrey A. Kolokoltsov, Scott C. Weaver, and Robert A. Davey
J. Virol. January 2005 79: 756-763;
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Engineering Glycoprotein B of Bovine Herpesvirus 1 To Function as Transporter for Secreted Proteins: a New Protein Expression Approach
Günther M. Keil, Constanze Höhle, Katrin Giesow, and Patricia König
J. Virol. January 2005 79: 791-799;
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Pathogenesis and Immunity:

Antibodies That Are Cross-Reactive for Human Immunodeficiency Virus Type 1 Clade A and Clade B V3 Domains Are Common in Patient Sera from Cameroon, but Their Neutralization Activity Is Usually Restricted by Epitope Masking
Chavdar Krachmarov, Abraham Pinter, William J. Honnen, Miroslaw K. Gorny, Phillipe N. Nyambi, Susan Zolla-Pazner, and Samuel C. Kayman
J. Virol. January 2005 79: 780-790;
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Epstein-Barr Virus gp42 Is Posttranslationally Modified To Produce Soluble gp42 That Mediates HLA Class II Immune Evasion
Maaike E. Ressing, Daphne van Leeuwen, Frank A. W. Verreck, Sinéad Keating, Raquel Gomez, Kees L. M. C. Franken, Tom H. M. Ottenhoff, Melanie Spriggs, Ton N. Schumacher, Lindsey M. Hutt-Fletcher, Martin Rowe, and Emmanuel J. H. J. Wiertz
J. Virol. January 2005 79: 841-852;
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Human Immunodeficiency Virus Type 1 Clade B Superinfection: Evidence for Differential Immune Containment of Distinct Clade B Strains
Otto O. Yang, Eric S. Daar, Beth D. Jamieson, Arumugam Balamurugan, Davey M. Smith, Jacqueline A. Pitt, Christos J. Petropoulos, Douglas D. Richman, Susan J. Little, and Andrew J. Leigh Brown
J. Virol. January 2005 79: 860-868;
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Characterization and Complete Genome Sequence of a Novel Coronavirus, Coronavirus HKU1, from Patients with Pneumonia
Patrick C. Y. Woo, Susanna K. P. Lau, Chung-ming Chu, Kwok-hung Chan, Hoi-wah Tsoi, Yi Huang, Beatrice H. L. Wong, Rosana W. S. Poon, James J. Cai, Wei-kwang Luk, Leo L. M. Poon, Samson S. Y. Wong, Yi Guan, J. S. Malik Peiris, and Kwok-yung Yuen
J. Virol. January 2005 79: 884-895;
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Biochemical Fingerprints of Prion Infection: Accumulations of Aberrant Full-Length and N-Terminally Truncated PrP Species Are Common Features in Mouse Prion Disease
Tao Pan, Poki Wong, Binggong Chang, Chaoyang Li, Ruliang Li, Shin-Chung Kang, Thomas Wisniewski, and Man-Sun Sy
J. Virol. January 2005 79: 934-943;
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Development of a Rotavirus-Shedding Model in Rhesus Macaques, Using a Homologous Wild-Type Rotavirus of a New P Genotype
Monica M. McNeal, Karol Sestak, Anthony H.-C. Choi, Mitali Basu, Michael J. Cole, Pyone P. Aye, Rudolf P. Bohm, and Richard L. Ward
J. Virol. January 2005 79: 944-954;
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Natural History of a Recurrent Feline Coronavirus Infection and the Role of Cellular Immunity in Survival and Disease
Jolanda D. F. de Groot-Mijnes, Jessica M. van Dun, Robbert G. van der Most, and Raoul J. de Groot
J. Virol. January 2005 79: 1036-1044;
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Diabetes Acceleration or Prevention by a Coxsackievirus B4 Infection: Critical Requirements for both Interleukin-4 and Gamma Interferon
David V. Serreze, Clive Wasserfall, Eric W. Ottendorfer, Michael Stalvey, Melissa A. Pierce, Charles Gauntt, Brian O'Donnell, James B. Flanagan, Martha Campbell-Thompson, Tamir M. Ellis, and Mark A. Atkinson
J. Virol. January 2005 79: 1045-1052;
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Infection of Ciliated Cells by Human Parainfluenza Virus Type 3 in an In Vitro Model of Human Airway Epithelium
Liqun Zhang, Alexander Bukreyev, Catherine I. Thompson, Brandy Watson, Mark E. Peeples, Peter L. Collins, and Raymond J. Pickles
J. Virol. January 2005 79: 1113-1124;
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Loss and Gain of Elicitor Function of Soybean Mosaic Virus G7 Provoking Rsv1-Mediated Lethal Systemic Hypersensitive Response Maps to P3
M. R. Hajimorad, A. L. Eggenberger, and J. H. Hill
J. Virol. January 2005 79: 1215-1222;
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Distinct Subsets of Primary Effusion Lymphoma Can Be Identified Based on Their Cellular Gene Expression Profile and Viral Association
Wen Fan, Darya Bubman, Amy Chadburn, William J. Harrington, Jr., Ethel Cesarman, and Daniel M. Knowles
J. Virol. January 2005 79: 1244-1251;
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Anti-Human Immunodeficiency Virus Type 1 (HIV-1) Antibodies 2F5 and 4E10 Require Surprisingly Few Crucial Residues in the Membrane-Proximal External Region of Glycoprotein gp41 To Neutralize HIV-1
Michael B. Zwick, Richard Jensen, Sarah Church, Meng Wang, Gabriela Stiegler, Renate Kunert, Hermann Katinger, and Dennis R. Burton
J. Virol. January 2005 79: 1252-1261;
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Squirrel Monkeys Support Replication of BK Virus More Efficiently than Simian Virus 40: an Animal Model for Human BK Virus Infection
Concepcion Zaragoza, Rui-mei Li, Gary A. Fahle, Steven H. Fischer, Mark Raffeld, Andrew M. Lewis, Jr., and Jeffrey B. Kopp
J. Virol. January 2005 79: 1320-1326;
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Older Rhesus Macaque Infants Are More Susceptible to Oral Infection with Simian-Human Immunodeficiency Virus 89.6P than Neonates
Agnès-Laurence Chenine, Flavia Ferrantelli, Regina Hofmann-Lehmann, Mark G. Vangel, Harold M. McClure, and Ruth M. Ruprecht
J. Virol. January 2005 79: 1333-1336;
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Structure and Assembly:

Virion Proteins of Kaposi's Sarcoma-Associated Herpesvirus
Fan Xiu Zhu, Jae Min Chong, Lijun Wu, and Yan Yuan
J. Virol. January 2005 79: 800-811;
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Incorporation of Three Endocytosed Varicella-Zoster Virus Glycoproteins, gE, gH, and gB, into the Virion Envelope
Lucie Maresova, Tracy Jo Pasieka, Elizabeth Homan, Erick Gerday, and Charles Grose
J. Virol. January 2005 79: 997-1007;
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Impairment of Nuclear Pores in Bovine Herpesvirus 1-Infected MDBK Cells
Peter Wild, Monika Engels, Claudia Senn, Kurt Tobler, Urs Ziegler, Elisabeth M. Schraner, Eva Loepfe, Mathias Ackermann, Martin Mueller, and Paul Walther
J. Virol. January 2005 79: 1071-1083;
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Roles of Carboxyl-Terminal and Farnesylated Residues in the Functions of the Large Hepatitis Delta Antigen
Brendan O'Malley and David W. Lazinski
J. Virol. January 2005 79: 1142-1153;
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A Surface Loop of the Potato Leafroll Virus Coat Protein Is Involved in Virion Assembly, Systemic Movement, and Aphid Transmission
Lawrence Lee, Igor B. Kaplan, Daniel R. Ripoll, Delin Liang, Peter Palukaitis, and Stewart M. Gray
J. Virol. January 2005 79: 1207-1214;
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Variable Surface Epitopes in the Crystal Structure of Dengue Virus Type 3 Envelope Glycoprotein
Yorgo Modis, Steven Ogata, David Clements, and Stephen C. Harrison
J. Virol. January 2005 79: 1223-1231;
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Influenza A Viruses with Mutations in the M1 Helix Six Domain Display a Wide Variety of Morphological Phenotypes
Laura M. Burleigh, Lesley J. Calder, John J. Skehel, and David A. Steinhauer
J. Virol. January 2005 79: 1262-1270;
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Three-Dimensional Localization of the Smallest Capsid Protein in the Human Cytomegalovirus Capsid
Xuekui Yu, Sanket Shah, Ivo Atanasov, Pierrette Lo, Fenyong Liu, William J. Britt, and Z. Hong Zhou
J. Virol. January 2005 79: 1327-1332;
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Transformation and Oncogenesis:

Transformation of Madin-Darby Canine Kidney Epithelial Cells by Sheep Retrovirus Envelope Proteins
Shan-Lu Liu and A. Dusty Miller
J. Virol. January 2005 79: 927-933;
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Letters to the Editor:

Relevance of Apoptin's Integrity for Its Functional Behavior
J. L. Rohn, Y.-H. Zhang, S. R. Leliveld, A. A. A. M. Danen-van Oorschot, N. V. Henriquez, J. P. Abrahams, and M. H. M. Noteborn
J. Virol. January 2005 79: 1337-1338;
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A Tumor Cell-Specific Nuclear Targeting Signal within Chicken Anemia Virus VP3/Apoptin
I. K. H. Poon, C. Oro, M. M. Dias, J.-P. Zhang, and D. A. Jans
J. Virol. January 2005 79: 1339-1341;
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