Supplemental material

Files in this Data Supplement:

• Supplemental file 1 -

  Fig. S1 (Structure of viral populations and patient selection.)

  Fig. S2 (Synonymous diversity across the HIV genome.)

  Fig. S3 (Time-dependent selection.)

  Fig. S4 (Within-epitope competition.)

  Fig. S5 (Marginal distributions in simulations.)

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