Combinatorial Latency Reactivation for HIV-1 Subtypes and Variants▿ †
- John C. Burnett1,4,
- Kwang-il Lim1,
- Arash Calafi1,
- John J. Rossi4,
- David V. Schaffer1,2,3,* and
- Adam P. Arkin2,3,*
- 1Department of Chemical Engineering and Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720
- 2Department of Bioengineering, University of California, Berkeley, California 94720
- 3Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
- 4Division of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, California 91010
ABSTRACT
The eradication of HIV-1 will likely require novel clinical approaches to purge the reservoir of latently infected cells from a patient. We hypothesize that this therapy should target a wide range of latent integration sites, act effectively against viral variants that have acquired mutations in their promoter regions, and function across multiple HIV-1 subtypes. By using primary CD4+ and Jurkat cell-based in vitro HIV-1 latency models, we observe that single-agent latency reactivation therapy is ineffective against most HIV-1 subtypes. However, we demonstrate that the combination of two clinically promising drugs—namely, prostratin and suberoylanilide hydroxamic acid (SAHA)—overcomes the limitations of single-agent approaches and can act synergistically for many HIV-1 subtypes, including A, B, C, D, and F. Finally, by identifying the proviral integration position of latent Jurkat cell clones, we demonstrate that this drug combination does not significantly enhance the expression of endogenous genes nearest to the proviral integration site, indicating that its effects may be selective.
FOOTNOTES
- Received 24 January 2010.
- Accepted 24 March 2010.
- *Corresponding author. Mailing address for David Schaffer: 274 Stanley Hall, Mail code 3220, University of California, Berkeley, CA 94720. Phone: (510) 643-5963. Fax: (510) 642-4778. E-mail: schaffer{at}berkeley.edu. Mailing address for Adam Arkin: 309B Hildebrand Hall, Mail code 3220, University of California, Berkeley, CA 94720. Phone: (510) 643-5678. Fax: (510) 643-3721. E-mail: aparkin{at}lbl.gov
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↵▿ Published ahead of print on 31 March 2010.
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↵† Supplemental material for this article may be found at http://jvi.asm.org/.
- American Society for Microbiology











