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Journal of Virology, April 2009, p. 3968-3976, Vol. 83, No. 8
0022-538X/09/$08.00+0 doi:10.1128/JVI.02609-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.
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Department of Pathology, Tufts University School of Medicine, Jaharis Building, Boston, Massachusetts 02111
Received 17 December 2008/ Accepted 27 January 2009
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An important insight into this question was the discovery that EBV persists in circulating, resting, memory B cells (5, 50) These cells do not express viral proteins (17) and appear to be maintained in the periphery by normal memory B-cell homeostasis mechanisms, not by the growth-promoting activity of the virus (44). Consequently, they are not a pathogenic risk to the host nor are they subject to immunosurveillance and can therefore persist benignly within the human host for decades.
The mechanism by which EBV gains access to the memory B cell remains controversial. The most widely held model is that the virus uses the growth latency program to drive newly infected resting B cells into the cell cycle so that they can differentiate into the resting memory state via the germinal center (GC) reaction, the GC model (50). The GC is the region of secondary lymphoid tissue where antigen-activated B cells undergo proliferation, class switch recombination (CSR), somatic hypermutation (SHM), antigen selection, and affinity maturation (28, 29, 31). In this highly competitive environment, failure to successfully compete for antigen and T-cell help leads to apoptosis, whereas success results in the production of plasma cells or memory cells (29). Because GC B cells are hyperproliferative and undergoing active processes that involve double-stranded DNA breaks (CSR) and mutation (SHM), they are considered at high risk for genetic abnormalities leading to B-cell lymphoma (22, 37, 42). Both CSR and SHM are mediated by the enzyme AID (activation-induced cytidine deaminase) (34), which is highly expressed in GCs. AID has recently been shown in a mouse transgenic model to be required for the generation of the immunoglobulin (Ig)/c-myc translocations characteristic of the EBV-associated tumor Burkitt's lymphoma (12). Thus, the potential intersection of EBV and the GC reaction, both of which drive B-cell growth and which, respectively, also provide antiapoptotic signals and promote genetic instability, provides a powerful combinatorial risk factor for development of lymphoma.
One limitation of the GC model is that the evidence linking EBV and the GC is only indirect and limited. We have shown previously that the tonsils of individuals persistently infected with EBV contain infected cells bearing the GC marker CD10 (6). Less than 0.2% of the cells were undergoing lytic replication (27); rather, the cells were latently infected, expressing a limited set of latent genes which included LMP1, LMP2, and EBNA1Q-K (the default latency program) (50). The same viral transcription program is found in Hodgkin's disease (38), a tumor of the GC (46). LMP1 and LMP2 have been shown to possess, respectively, the CD40 and BCR signaling functions necessary for GC survival (7, 8, 13, 15, 35, 47), and EBNA1 is required for replication of the viral genome. However, CD10 is only a phenotypic marker of GC cells. It has no known GC-specific function and is also expressed on immature B cells. Furthermore, it is known that EBV latent proteins like LMP1 can profoundly affect the surface phenotype of the cells it infects. Therefore, the presence of CD10 on latently infected tonsil B cells is not definitive of a GC origin and could be an artifact of virus infection. Immunohistochemical analysis has demonstrated the presence of rare, usually single, EBV-infected cells in the GCs of healthy carriers of the virus (20). However, the nature of these cells and the viral genes they express were not explored and we now know that GCs are highly dynamic structures that are often traversed by other B cells (40). Therefore, these cells could be latently infected memory cells temporarily entering the GC. In sum, a key portion of the GC model, that EBV-infected cells physically reside and participate in GCs, has yet to be verified.
The GC model has been further challenged based on studies demonstrating that upon in vitro infection of GC cells with EBV the lymphoblastoid phenotype, induced by the growth latency program, is dominant and the infected cells lose their functional and phenotypic GC markers (43). This is consistent with earlier findings that the dominant population of EBV-infected cells, identified by microdissection and present in the GCs of tonsils from individuals acutely infected with EBV, were undergoing clonal expansion driven by the viral growth latency program and did not express GC markers (26). Together these studies imply that latent infection with EBV and GC functionality are not compatible and have led to an alternate model of EBV persistence. In this model EBV-infected cells do not undergo a GC reaction but instead the virus directly infects memory and/or GC B cells that initially undergo clonal expansion driven by the viral growth latency program and then through some unspecified selection process enter into a resting state (25, 26). We argued in a previous study (14) that persistent EBV infection is already established at or near long-term levels by the time patients arrive in the clinic, and therefore the number of EBV-infected cells undergoing a GC reaction would be too small to be detected by traditional microdissection techniques. Furthermore, we had shown earlier (6) that direct infection of GC cells in vitro gives rise to the growth latency transcription program, not the default latency program, and argued therefore that CD10+ cells from tonsils that express the default latency program must arise from another mechanism than direct infection with the virus. We further argued that what was being observed in the GCs of acutely infected individuals was a consequence of direct infection with EBV which, just like in vitro, always leads to the dominant lymphoblastoid phenotype. This type of infection would be transient as a consequence of early events occurring prior to the initiation of the immune response and would be eliminated by cytotoxic lymphocytes (CTL), leaving only small numbers of EBV-infected cells truly undergoing a GC reaction in long-term persistent infection.
Thus, the issue of whether EBV-infected cells expressing the default latency transcription program physically enter into and participate in the GC, which is central to our understanding of EBV persistence and lymphomagenesis, remains to be settled. To address this, we have asked if the EBV-infected CD10+ tonsil cells expressing the viral default latency program, which we have described previously, express the classical functional and phenotypic markers of GC cells and whether they are physically located in GCs.
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Cells and cell lines. The EBV-positive lymphoblastoid cell line IB4 (gift of Eliot Kieff) was used as a positive control for DNA PCR of the W-repeat region of the EBV genomes, and TaqMan reverse transcription-PCR (RT-PCR) was used for EBER1, LMP1, and LMP2. The EBV-positive Burkitt's lymphoma cell line Rael (gift of Sam Speck) was used as the positive control for EBNA-1 Q-K TaqMan RT-PCR. The EBV-negative cell line CB59, a mouse T-cell hybridoma cell line (gift of Miguel Stadecker) was used as a negative control in all experiments. All cell lines were cultured at 37°C with 5% CO2 in RPMI 1640 supplemented with 10% fetal bovine serum, 2 mM glutamine, 2 mM sodium pyruvate, and 100 IU of penicillin-streptomycin (RPMI complete).
Tonsil B-cell subpopulations were purified by fluorescence-activated cell sorting (FACS). Cells were resuspended to 5 x 106 cells/100 µl in PBS-5%BSA and placed in Eppendorf tubes. For cell surface labeling only, the appropriate concentration of fluorochrome-conjugated antibody was added to the tube and incubated for 15 min at 4°C and the cells were then washed. For intracellular staining the fluorochrome-conjugated antibodies against cell surface markers were added to cells and incubated for 15 min at room temperature. Cells were washed, fixation solution (1% paraformaldehyde in PBS) was added, and incubation continued for 15 min at room temperature. Then, cells were washed, permeabilization solution (0.5% saponin in PBS) was added, and cultures were incubated for 20 min at room temperature. Fluorochrome-conjugated antibody to the intracellular marker was added, incubated for 15 min at room temperature, and washed. For indirect stains an additional step of incubations and washes was included. Cells were analyzed and sorted by the MoFLO FACS system at the Tufts University Laser Cytometry Unit. Each sorted population underwent reanalysis to ensure >90% purity. For a list of markers tested, see Table 1, and for antibody source, dilution, and fluorochrome information see Table S1 in the supplemental material.
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TABLE 1. Cell markers used in this study and their functional relations to the GC
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Histology staining of human tonsil samples. Cuboidal tonsil tissue pieces were submerged in RNALater (Ambion), placed in histology blocks with OCT compound, and flash frozen in liquid nitrogen. Tissue histoblocks were sent to the NEMC Pathology Lab, where they were sectioned (10 µm), three slices per slide, using a –30°C microtome and stored at –80°C. Slides were washed with 70% ethanol in distilled RNase and DNase-free water on ice for 2 h, stained with 20% hematoxylin solution in RNALater for 10 s, washed, then stained with 10% eosin solution in RNALater, and dried with a series of ethanol and xylene washes. Stained sections were examined under a microscope and dissected by scraping out the cells using a sterile scalpel and placing in an RNase-free Eppendorf tube filled with PBS plus 5% BSA on ice. GCs were pooled from 1 to 30 slides. Each slide contained three tissue slices with 10 GCs per slice. For the negative control dissections, broad swaths of the EBV-negative tonsil tissues were taken that included multiple GCs, mantle zones, and interfollicular cells.
Purification of RNA and RT-PCR. RNA was purified by TRIzol extraction (Invitrogen) and then treated with DNase I (Invitrogen) to eliminate DNA prior to RNA amplification. cDNA was synthesized from RNA using an Invitrogen cDNA kit. For the cDNA synthesis reaction mixture a master mix was prepared which included 4 µl of 5x iScript reaction mix, 1 µl of iScript reverse transcriptase, and 8 µl of nuclease-free water. Seven µl of purified RNA was added to 13 µl of master mix. All reactions were performed on an Applied Biosystems PCR machine. The protocol was as follows: one cycle that included 5 min at 25°C, 30 min at 42°C, and 5 min at 85°C. For the RT-PCR a master mix was prepared, containing 12.5 µl of IQ Supermix (Bio-Rad), 2.5 µl of 900 nM primers, and 2.5 µl of 250 nM fluorogenic probe. Five µl of cDNA was added to 20 µl of master mix with a final reaction volume of 25 µl. All RT-PCRs were performed on a Bio-Rad iCycler. The protocol was as follows: step 1, one cycle of 3 min at 95°C; step 2, 55 cycles of 15 s at 95°C and 1 min at 60°C. All RT-PCR assays were optimized to detect down to the single cell level. See Table S2 in the supplemental material for a list of primers and probes.
Calculation of the total number of dissected GC cells. For each tonsil to be analyzed by scraping/dissection a piece was set aside for isolation of the GC cells (CD19+ CD10+) by flow cytometry. A series of dilutions of 105, 104, 103, and 102 of these GC cells was then made and aliquoted into sterile Eppendorf tubes, with five replicates for each dilution. Each of the replicates was further diluted 1/2, 1/4, and 1/8. cDNA was synthesized and RT-PCR for CD10 was then performed on each dilution. A calibration curve of cell number versus CD10 RT-PCR cycle number was plotted and used to convert the CD10 RT-PCR signal obtained from the pooled dissected GC cells, from the same tonsil, into an estimate of cell number.
Calculation of the number of infected cells in the dissected GC cells. In a series of control experiments we observed that the EBER1 copy number in CD10+ GC cells isolated by flow cytometry was very similar to the copy number in the EBV+ lymphoblastoid cell line IB4. Therefore, we generated an EBER1 RT-PCR calibration curve by performing EBER1-specific RT-PCR on cells from the IB4 EBV lymphoblastoid cell line serially diluted with cells from an EBV-negative tonsil. A calibration curve of cell number versus EBER1 RT-PCR cycle number was plotted and used to convert the EBER1 RT-PCR signal obtained from the scraped/dissected GC cells into an estimate of infected cell number.
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FIG. 1. The flow cytometry protocol used in this study. (A) Schematic representation of the protocol. Naïve (IgD+ CD10–) and GC (IgD– CD10+) cells were sorted from gated tonsil B cells (CD19+) (not depicted). In parallel, the GC population was sorted based on expression of CD10 expression and a second GC marker. If the EBV+ CD10+ population expresses the second marker they will copurify (left panel); if not they will be lost (right panel). Red dots, tonsil B cells; green dots, EBV-infected cells. (B) Actual staining profiles for bcl-6 and AID. (Negative control stain results are shown in the supplemental material.)
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TABLE 2. Frequency of EBV-infected cells in the CD10+ GC population before and after counterselection for a second GC marker
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EBV-infected CD10+ tonsil B cells express CD38. CD38 is expressed on GC cells and highly expressed on plasma cells, although its function on either population is unknown. Despite this, CD38 is routinely used as a standard marker for GC cells, both in flow cytometry and immunohistochemical studies (36). We therefore again used the same approach described in the previous sections to analyze CD38 expression on the CD10+ EBV-infected population of tonsil cells. As can be seen in Table 2 these cells also coexpressed CD38.
In summary the EBV-infected CD10+ population in tonsils expresses GC-specific functional markers and homing receptors, and these cells are phenotypically indistinguishable from GC B cells.
Distribution of EBV and latent gene expression in subsets of GC B cells. The data in the previous section suggest that EBV latent gene expression does not detectably influence the behavior of the latently infected GC cells. A hallmark of the GC is the progression of the cells through stages of proliferation (centroblasts) and resting (centrocytes). Centroblasts (CBs) are actively undergoing CSR and SHM and have downregulated the surface expression of their immunoglobulin (sIg) genes. When they undergo growth arrest to become centrocytes (CCs) they reexpress sIg and undergo antigen selection. Besides sIg and proliferation, CBs and CCs are routinely distinguished based on expression of the marker CD77 (positive and negative, respectively) (29), although its specificity has recently been challenged (19). CD77 is a neutral glycosphingolipid and like CD10 and CD38 has no known GC-related function.
To further analyze the behavior of EBV in the GC process we have tested for its presence in CBs and CCs fractionated based on sIg and CD77. The cells in each population were assessed for the expression of viral genes by using a limiting dilution RT-PCR that we have described previously (17) (see Materials and Methods). The genes tested were EBER1 (expressed in all infected cells), to estimate the frequency of infected cells, and LMP1, LMP2, and EBNA1Q-K (characteristic genes of the default latency program that we have previously shown to be expressed by the CD10+ EBV-infected population [6]). As can be seen in Table 3, in all cases we found that EBV was equally distributed between the CB and CC populations and that both populations expressed the default latency transcription program. We conclude therefore that there was no discernible trend to suggest that EBV is preferentially retained in either population or that there was any evidence of differential latent gene expression between the two populations.
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TABLE 3. Frequency of EBV-infected cells and RNA expression profile in CD10+ centroblast (sIglo CD77+) and centrocyte (sIghi CD77–) populations
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104 cells were tested and never with fewer cells. This was consistent with, and expected based on, the frequency of EBV-infected cells we measured in the CD10+ population isolated by flow cytometry from the same tonsil, which typically was
1 in 105 (see below). Second, detection of EBV by EBER1 RT-PCR always coincided with detection of the genes of the default latency program (32/32 samples), whereas default latency program genes were never detected when EBER1 was not detected (20/20 samples). Third, EBV-infected cells were not detected in control experiments where cells were scraped from tonsils previously determined to be EBV negative (samples labeled NCpool). Fourth, when cells were scraped and pooled from the mantle zones around the corresponding GCs, we detected no signals for any of the EBV genes we tested (not shown). We conclude therefore that the signals we have found cannot be due to fortuitous inclusion of mantle zone cells during the scraping process. Lastly, we were unable to detect an RT-PCR signal for CD10 in scraped cells from the mantle zone, interfollicular region, or epithelial/marginal zone region of the tonsil (not shown). This last control allowed two important conclusions. First, the sectioning technique did not smear cells across the tissue slice, and therefore our EBV-positive signals were actually located in the GC. Second, and most importantly, all of the CD10 signals detectable by our microdissection and RT-PCR studies reside within the physical demarcations of the GC. Since our CD10 RT-PCR techniques can detect the signal from the RNA equivalent to less than one CD10+ tonsil cell, separated by flow cytometry, we conclude that all detectable CD10+ cells reside physically within the GC. Therefore, the CD10+ EBV+ cells detected and analyzed by flow cytometry above must also reside physically within the GC.
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FIG. 2. Identification and dissection of germinal centers from the tonsils of healthy carriers of EBV. (Left) A tonsil germinal center stained for expression of the GC-specific marker CD10. (Center) A second GC from a tonsil section stained with hematoxylin and eosin. The GC is delineated by the dotted line and the darker-stained region around the GC is the mantle zone delineated by a dashed line. (Right) The same section after dissection of the GC.
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TABLE 4. Frequency of EBV-infected cells and viral RNA expression in pooled tonsil GCs
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TABLE 5. Frequency of EBV-infected cells in pooled scraped GCs compared to estimates in GCs isolated based on CD10 expression and flow cytometry
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In virtually every aspect that we have examined, the EBV-infected GC cells in vivo are indistinguishable from antigen-activated GC cells and appear to be undergoing a normal GC reaction. This includes expression of the defining GC markers bcl-6 and AID. We may conclude therefore that the expression of CD10 on latently infected tonsil cells that we have described previously (6) is not an artifact due to the presence of the virus. Rather, it reflects the genuine status of these cells as GC cells. The cells also appear to be undergoing the process of cycling between centroblasts (sIglo CD77+) and centrocytes (sIghi CD77+). This is consistent with our ongoing view that EBV exploits rather than alters normal B-cell biology to establish and maintain persistent infection. It also explains our previous observations that the resulting latently infected memory B cells appear normal by every criterion we have tested (44, 45).
The one aspect in which the latently infected GC B cells do not appear to be normal is the absence of the massive clonal expansion characteristic of the GC. There are several possible explanations for this. The simplest is that the cells only undergo a few rounds of division before leaving the GC, perhaps because LMP1 and LMP2 signaling allows them to bypass the requirement for extensive expansion. The main objection to this is that mutational analysis of latently infected memory B cells in the periphery suggests that they have been through many rounds of proliferation in the GC (44). A second possibility is that the cells are indeed undergoing extensive proliferation but at the same time are being surveilled and killed by CTL. We favor this explanation because it is well-documented that there is a high frequency of activated CTL in tonsils that recognize latent proteins, including those expressed in the default latency program (16). A third possibility is that these represent latently infected memory cells that have migrated by chance into the GC and for some reason adopted a GC phenotype and presumably remained due to expression of GC-specific chemokine receptors. We think this is unlikely since there is no precedent for this type of behavior by memory B cells.
In our experiments viral gene expression is, of necessity, measured at the RNA level with the assumption that this correlates with protein expression. Given this caveat it appears that the GC process is not detectably altered by the expression of LMP1 and LMP2, which seem always to be coexpressed in the GC. What then is the role of LMP1 and LMP2 in the GC? Studies in vitro and from transgenic mice have imputed potent signaling activities to LMP1 and LMP2 (7, 8, 13, 15, 35, 47), implying that they can, in principle, drive the entire GC process in the absence of antigen and even rescue defective B cells (7, 47). However, this does not appear to be happening in vivo. The roles of LMP1 and LMP2 must presumably be more modest, perhaps only supplementing physiologic signals to provide a survival advantage in the highly competitive environment of the GC. For example, the EBV-infected cells may be antigen specific but would not have to compete effectively for antigen in order to survive, because LMP2 could supplement the necessary rescue signal. Similarly, the latently infected GC cells may only receive limited T-cell help, but LMP1 is capable of providing constitutive T-cell help signals. It has been suggested that extended T-cell help signaling preferentially pushes GC cells away from plasma cell differentiation and toward memory cells (3). Thus, the role of LMP1 may be to ensure that the latently infected GC cells enter the memory compartment, where they can persist, and not become plasma cells.
EBV and the GC are both potential sources of disease. EBV is a risk factor for cancer because of its growth-promoting activity. For example, unregulated LMP1 expression is oncogenic in transgenic mice (24), and LMP1 is constitutively expressed in Hodgkin's disease (4), implicating LMP1 in tumor development. EBV is also a potential risk factor for autoimmunity, because constitutive expression of LMP2 in transgenic mice can rescue autoreactive B cells (47), providing a possible mechanism for EBV in autoimmune diseases. Similarly, the GC reaction is characterized by SHM and CSR, which involve mutation and double-stranded DNA breaks that may favor tumor development and SHM of Ig genes, which could generate autoreactive B cells. Because of this, both EBV and the GC are tightly controlled and do not normally lead to pathogenesis; however, their interaction may greatly increase the risk of disease. For cancer this is clearly the case. The intersection of EBV and the GC provides a potential origin for Hodgkin's disease and Burkitt's lymphoma, both of which are associated with the GC and EBV. Whether the intersection of EBV and the GC also leads to autoimmune disease remains to be established.
Our results reveal the limitations of studies with cell lines and transgenic mice and the importance of corroborating these findings in human in vivo infections. For example, in vitro it has been shown that LMP1 downregulates bcl-6 (35) in B-cell lines, whereas it is apparent from our studies on GC cells in vivo that bcl-6 can be upregulated in the presence of LMP1. This led us to the conclusion that lymphoblastoid cell lines represent a potentially artifactual state that may not always reflect the normal biology of the virus in vivo. This conclusion presents itself because newly infected B cells in vivo do not appear normally to go through many rounds of cell division driven by the growth latency program and certainly have not been selected for efficient growth in tissue culture. Extensive proliferation of EBV-infected lymphoblasts may only arise in vivo in the context of pathogenic entities such as posttransplant lymphoproliferative disorder. It follows that observations made with lymphoblastoid cell lines should be substantiated in vivo and in some instances may better reflect on the pathogenic rather than the normal behavior of infected cells.
Similarly, problems arise in interpreting studies from transgenic mice, because in these studies single viral genes are expressed from nonviral promoters lacking the context of the whole virus (7, 8, 24, 47, 51). This produces inappropriate levels, locations, times, and contexts of expression. For example, in vivo, LMP1 is nearly always expressed in the context of LMP2, yet in transgenic mice the behavior of one LMP molecule is never studied in the context of the other. Furthermore, LMP1 is oncogenic (24) and LMP2 rescues autoreactive B cells (47) in transgenic mice, but neither happens in the healthy carrier state. Transgenic approaches are thus also revealed to have limited utility for studying the normal biology of EBV. Only in tumors is the expression of these potentially pathogenic latent genes constitutive due to other genetic lesions in the cells. These lesions presumably prevent the latently infected B cells from exiting the cell cycle, switching off latent gene expression, and becoming memory cells. Thus, transgenic experiments may be more informative for understanding the pathogenesis of EBV-associated diseases.
In conclusion, we have verified a key component of the GC model of EBV persistence and in doing so have shown an intimate interaction between the GC process and B cells latently infected with EBV. This interaction has the potential for explaining the origins of EBV-associated neoplastic and autoimmune diseases.
This work was supported by Public Health Research grants CA65883, AI18757, and AI062989.
Published ahead of print on 4 February 2009. ![]()
Supplemental material for this article may be found at http://jvi.asm.org/. ![]()
Present address: Department of Immunology and Microbiology, Scripps Research Institute, 10550 N. Torrey Pines Rd., La Jolla, CA 92037. ![]()
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