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Journal of Virology, February 2009, p. 1511-1522, Vol. 83, No. 3
0022-538X/09/$08.00+0 doi:10.1128/JVI.01381-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, Kentucky 40536-0509,1 Department of Biochemistry, Molecular Biology and Cell Biology, Northwestern University, Evanston, Illinois 60208,2 Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland 20892-80073
Received 2 July 2008/ Accepted 13 November 2008
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The most common cause of respiratory tract disease in infants is respiratory syncytial virus (RSV), a virus closely related to HMPV (64). Both RSV and HMPV are classified in the subfamily Pneumovirinae of the family Paramyxoviridae (21, 60). One clear distinction between viruses of the Pneumovirinae subfamily and the Paramyxovirinae subfamily with regard to the viral entry mechanism has become apparent in recent years. While the homotypic attachment protein (G, H, or HN) of viruses within the Paramyxovirinae subfamily is required for virus attachment and membrane fusion promotion by the viral F protein, the "attachment" proteins (G) of multiple Pneumovirinae subfamily members were shown to be dispensable for entry in cultured cells and also in vivo in the case of HMPV (7, 9, 41, 48, 56). In fact, HMPV with G deleted was infectious in primates (7). Furthermore, the G protein of HMPV did not enhance cell-cell fusion promoted by F in transfected Vero cells (49), suggesting that the HMPV F protein alone is capable of performing both the critical attachment step and efficient membrane fusion.
All viruses are generally classified in either a neutral pH/plasma membrane entry category or a low pH/endocytic entry category (reviewed in references 18 and 38). The trigger of fusion between the viral membrane and the plasma membrane in a neutral pH environment is thought to involve receptor binding (35, 36), while fusion with endosomal membranes is generally triggered by the increased concentration of hydrogen ions within the endosomal pathway (52). Paramyxoviruses are believed to promote fusion under neutral pH conditions at the plasma membrane, and any exceptions to this rule remain controversial (35). Fusion promoted by the rubulavirus SER was first shown to be stimulated by low pH (50), but a subsequent analysis revealed extensive conflicting data (10). Recently, the small interfering RNA knockdown of several proteins involved in endocytosis and vesicular trafficking was shown to inhibit infection by RSV (33). However, inhibitors of endosomal acidification did not have a significant effect on infection, suggesting that RSV uses an endocytic route of entry into cells, but the low pH of endosomes is not an essential trigger of fusion. Conversely, we have shown that cell-cell fusion promoted by HMPV F is stimulated by a low pH (49), but the necessity of low pH in virus entry has not been examined.
The paramyxovirus F protein is a type I fusion protein, indicating that the formation of a six-helix bundle by two individual heptad repeat regions in the trimeric protein is directly linked to the merger of membranes that results in virus entry or cell-cell fusion (35). There must be a specific trigger of fusion because the F protein conformational change is irreversible and premature activation prevents infection (15, 16). The triggering of paramyxovirus F proteins is thought to occur following receptor binding by the attachment protein at the plasma membrane (2, 36). However, the ability of HMPV to infect cells and promote fusion in the absence of an attachment protein suggests that the trigger of fusion for this viral F protein must be different. It is likely that the F protein itself can bind a receptor and that this may play a role in the trigger of fusion. However, the observation of low-pH-stimulated cell-cell fusion by HMPV F raises the possibility that the low pH of the endosomal pathway may be an important physiological trigger of the HMPV F conformational change that results in entry.
Influenza virus HA is also a type I fusion protein, and fusion promoted by this viral protein is known to be triggered by low pH (52). The mechanism of low-pH triggering is hypothesized to involve electrostatic repulsion between residues that become protonated in a low-pH environment and neighboring residues (14, 28). The prefusion conformation of both influenza virus HA and paramyxovirus F proteins is metastable (15, 36); thus, it is possible that minor yet specific changes in protein stability induced by changes in side chain ionization state lead to the extensive reorganization in protein structure that accompanies membrane fusion. Histidine residues, with a side chain pKa of 6.04 in solution, are the amino acids most likely to ionize within the physiological pH range (63). Indeed, histidine residues have been shown to modulate the pH at which fusion by influenza virus HA is achieved (57), and low-pH-induced conformational changes of VSV G were inhibited by the chemical modification of histidine residues (14), observations consistent with the electrostatic repulsion hypothesis of triggering. A specific histidine residue at the domain I to III interface has also been recently shown to be critical for the triggering of the type II tick-borne encephalitis E fusion protein (22). Specific regions in paramyxovirus F proteins have also been implicated in the modulation of fusion activity under neutral pH conditions (23, 46), as the replacement of residues in these regions can increase or decrease fusion depending on the side chain present. One such region, referred to as the heptad repeat B (HRB) linker, is located N terminal to the C-terminal heptad repeat region (46).
We have examined histidine residues in the HMPV F ectodomain for a potential role in low-pH triggering of fusion. In transient expression experiments, we discovered a residue in the HRB linker domain that is important for fusion promotion. Interestingly, this residue is surrounded by several basic residues, the mutation of which also resulted in defective low-pH triggering of fusion. The biological significance of low-pH fusion in virus entry was also examined. Inhibitors of endosomal acidification were found to reduce but not abolish the infectivity of HMPV, while inhibitors of endocytosis resulted in even greater reductions in HMPV infectivity. These results suggest that the low-pH environment encountered after the endocytosis of HMPV may stimulate F protein triggering and subsequent membrane fusion.
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Plasmids and antibodies. The HMPV F gene was subcloned into the pCAGGS mammalian expression vector as described previously (49). All HMPV F protein mutants were created with the gene in pGEM-3Zf(+) using QuikChange site-directed mutagenesis (Stratagene) and subcloned into pCAGGS. All mutants were sequenced in their entirety. Antipeptide antibodies (Genemed Synthesis, San Francisco, CA) were generated using amino acids 524 to 538 of HMPV F.
Viruses. Recombinant, green fluorescent protein (GFP)-expressing HMPV (clade A2, CAN 97-83 strain) containing a codon-stabilized SH gene was synthesized as described previously (6). HMPV (at a multiplicity of infection [MOI] of 0.01 to 0.03) was propagated in Vero cells incubated at 32°C with Opti-MEM, 2 mM L-glutamine, and 0.3 µg/ml TPCK (N-tosyl-L-phenylalanine chloromethyl ketone)-trypsin replenished every other day. On the 10th day, the cells and medium were collected, SPG (218 mM sucrose, 0.0049 M L-glutamic acid, 0.0038 M KH2PO4, 0.0072 M K2HPO4) from a 10x stock was added, and aliquots were frozen in dry ice/methanol and thawed twice prior to storage at –80°C. Titers of approximately 1 x 107 were achieved with this method. Recombinant GFP-expressing PIV5 (formerly called SV5) was kindly provided by Robert Lamb (Howard Hughes Medical Institute, Northwestern University). GFP was inserted between the P/V and M genes with a duplicate of the EIS sequence that precedes M. PIV5 was propagated in MDBK cells as described previously (43), but PIV5 was also stored in the SPG stabilizing agent. Recombinant VSV, kindly provided by Michael A. Whitt (University of Tennessee Health Science Center, Memphis, Tennessee) in which the G envelope gene was replaced with the GFP gene and pseudotyped with the VSV G glycoprotein was propagated as previously described (55).
Reporter gene fusion assay. Vero cells in 6-cm dishes were transfected using Lipofectamine Plus reagents (Invitrogen) with 1.5 µg pCAGGS-HMPV wild-type or mutant F protein and 1.5 µg T7 control plasmid (Promega) containing luciferase cDNA under the control of the T7 promoter. The following day (see Fig. 2 and 3) or 2 days later (incubated at 32°C the second night; Fig. 4), Vero cells in one 6-cm dish were lifted from the plate surface with trypsin, a process which also efficiently cleaved the HMPV F protein. The cells were resuspended in DMEM plus 10% FBS and overlaid onto two 35-mm dishes of confluent BSR cells, which constitutively express the T7 polymerase. The combined cells were incubated at 32°C for 60 min. The cells were then rinsed once with PBS (#14287; Gibco Invitrogen, Carlsbad, CA) (pH 7.2) before adding pH 5, 7, or 4.5 PBS (as indicated in Fig. 2 to 4) buffered with 10 mM HEPES and 5 mM MES (morpholineethanesulfonic acid; the pH 4.5 PBS contains 10 mM MES). The cells were incubated for 4 min at 37°C under the indicated pH conditions, and then Opti-MEM with 0.3 µg/ml TPCK-trypsin was added. The cells were again incubated at 32°C for 1 h, and then the cells were treated with pH 5, 7, or 4.5 PBS as before. DMEM with FBS was added after this treatment, and the cells were incubated at 37°C for 4 h. Finally, the cell lysates were analyzed for luciferase activity using a luciferase assay system (Promega) according to manufacturer's protocol. Light emission was measured using an Lmax luminometer (Molecular Devices, Sunnyvale, CA).
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FIG. 2. Cell surface expression and fusion activity of histidine mutants. (A) Surface expression in Vero cells of transiently expressed, metabolically labeled (5 h, in the presence of 0.3 µg/ml TPCK-trypsin) wild-type F protein (Fwt) and histidine mutants in pCAGGS vectors. Biotinylation of the surface prior to cell lysis, immunoprecipitation, and separation of the total and surface populations by streptavidin pull-down was performed. Proteins were resolved by 10% SDS-PAGE and visualized by autoradiography. (B) Luciferase reporter gene assay of fusion between Vero cells transiently transfected with T7-luciferase and pCAGGS-wild-type F protein (Fwt) or -histidine mutant and BSR cells constitutively expressing the T7 polymerase. Mixed cell populations were exposed to pH 7 or pH 5 buffered PBS as described in Materials and Methods and then lysed and analyzed for luminosity. Data are presented as a percentage of the wild-type F protein luminosity at pH 5, the average value of which from four separate experiments was 6.4. Error bars represent 95% confidence intervals.
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FIG. 3. Stimulation of histidine mutant fusion by decreasing pH. Luciferase reporter gene assay of fusion between Vero cells transiently transfected with T7-luciferase and wild-type F protein (Fwt) or a histidine mutant in the pCAGGS vector or vector alone and BSR cells constitutively expressing the T7 polymerase. Mixed cell populations were exposed to pH 5 or pH 4.5 buffered PBS as described in Materials and Methods and then lysed and analyzed for luminosity. Data are presented as a percentage of the wild-type F protein luminosity at pH 5 (A) and the percent luminosity at pH 4.5 divided by the luminosity at pH 5 from panel A (B). The average luminosity from three separate experiments was 16.5. Error bars represent standard deviations.
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FIG. 4. Model, surface expression and fusion activity of basic residue mutants surrounding H435. (A) Image from a homology model of HMPV F based on the prefusion PIV5 F crystal structure. Orange, N353 (glycosylated residue); yellow, H435; red, basic residues (K295, R396, K438). Only the side chains of highlighted residues are shown. (B) Surface expression in Vero cells of transiently expressed, metabolically labeled (5 h, in the presence of 0.3 µg/ml TPCK-trypsin) wild-type F protein and basic residue mutants in pCAGGS vectors. Biotinylation of the surface prior to cell lysis, immunoprecipitation, and separation of the total and surface populations by streptavidin pulldown was performed. Proteins were resolved by 10% SDS-PAGE and visualized by autoradiography. (C) Luciferase reporter gene assay of the fusion between Vero cells transiently transfected with T7- luciferase and pCAGGS-wild-type F protein (Fwt) or -basic residue mutant and BSR cells constitutively expressing the T7 polymerase. Mixed cell populations were exposed to pH 7 or pH 5 buffered PBS as described in Materials and Methods and then lysed and analyzed for luminosity. Data are presented as a percentage of the wild-type F protein luminosity at pH 5, of which the average value from four separate experiments was 12.1. Error bars represent 95% confidence intervals.
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Syncytia.
Vero cells in 35-mm dishes at
70% confluence were infected with HMPV (MOI = 0.5) and incubated overnight at 32°C. The next day, infected cells were incubated in Opti-MEM with or without 0.3 µg/ml TPCK-trypsin for 1.5 h at 32°C. The cells were then rinsed once with PBS (pH 7.2) before adding pH 5 or 7 PBS buffered with 10 mM HEPES and 5 mM MES. The cells were incubated for 4 min at 37°C under the indicated pH conditions and washed, and Opti-MEM ± 0.3 µg/ml TPCK-trypsin was added. The cells were again incubated at 32°C for 1 to 2 h and then treated with pH 5 or 7 PBS as before. The trypsin and pH treatment was repeated four times total. DMEM with 2% FBS was added after the last treatment and incubated overnight at 32°C. Photographs were taken the next morning with a Spot Insight Firewire digital camera mounted on a Zeiss Axiovert 100 inverted microscope.
Drug treatments. Bafilomycin A1 (Calbiochem), concanamycin A (Calbiochem), monensin (Sigma), and dynasore (Tocris Bioscience) stock solutions were made in dimethyl sulfoxide (DMSO). Ammonium chloride (Sigma) and chlorpromazine (Alexis Biochemicals) were dissolved in PBS. Chlorpromazine stock solutions were made fresh for each experiment. Confluent monolayers of cells in 24-well plates were pretreated for 1.5 h for lysosomotropic agents, 1 h for chlorpromazine, or 30 min for dynasore, with the drug or vehicle control (control volume equal to the maximum volume of the drug) at the concentrations indicated. The drugs were diluted (1:100 dilution or less) into DMEM (Vero cells) or RPMI (A549 cells) medium plus FBS and P/S (minus FBS for dynasore). For experiments with ammonium chloride, 20 mM HEPES-buffered DMEM plus FBS and P/S was used during the drug treatments. Infections were carried out in the presence of a drug or vehicle control, such that 30% of the cells on average would be infected in the control wells. After 4 h at 37°C (2 h for the dynasore experiments), the cells were washed and incubated in DMEM or RPMI medium for an additional 6 h (VSV) or 12 to 16 h (HMPV and PIV5) at 37°C. For an analysis of the dynasore effects postinfection, the drug or vehicle control (DMSO) was added 2 h postinfection and then removed after 2 h. The cells were then washed twice with PBS minus calcium or magnesium, and 110 µl/well 0.05% trypsin plus EDTA (Gibco Invitrogen) was added. When the cells had detached from the dish, 110 µl/well 2% formaldehyde was added and the cells were collected for analysis by flow cytometry where the GFP fluorescent intensity of at least 10,000 cells was determined. Data shown in the graphs in Fig. 6 through 9 represent the percentage of GFP-expressing cells in the total population as a percentage of the control treated cells (set to 100%).
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FIG. 6. Virus entry in Vero cells treated with inhibitors of endosomal acidification. Monolayers of Vero cells in 24-well plates were pretreated with drugs: bafilomycin A1 (A), concanamycin A (B), ammonium chloride (C), and monensin (D) or vehicle control diluted in DMEM plus FBS at the concentrations indicated for 1.5 h. The DMEM was buffered with 20 mM HEPES for the ammonium chloride treatments. Infections were carried out in the presence of the drugs or vehicle control such that 30 to 40% of the cells would be infected on average in control wells, and the cells were incubated for 4 h at 37°C. The cells were then washed and incubated in DMEM plus FBS for an additional 6 h (VSV) or 12 to 16 h (HMPV and PIV5) at 37°C. The cells were then detached with trypsin, fixed in 1% formaldehyde, and analyzed for GFP expression by flow cytometry. Data shown represent the number of GFP-expressing cells as a percentage of that of the control, set to 100% for each virus, from at least four separate experiments. Error bars represent 95% confidence intervals.
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FIG. 9. Effect of endocytosis inhibitors on HMPV infection. Virus entry in Vero cells treated with chlorpromazine (A) or dynasore (B). Monolayers of Vero cells in 24-well plates were pretreated with drug (chlorpromazine for 1 h; dynasore for 30 min) or vehicle control diluted at the concentrations shown. Infections were carried out in the presence of the drug or vehicle control such that 30 to 40% of the cells would be infected on average in the control wells, and the cells were incubated at 37°C for either 4 h (chlorpromazine) or 2 h (dynasore). The cells were then washed and incubated in DMEM plus FBS for an additional 6 h (VSV) or 12 to 16 h (HMPV and PIV5) at 37°C. For analysis of the dynasore effects postinfection, drug or vehicle control (DMSO) was added 2 h postinfection and then removed after 2 h. For all samples, the cells were detached with trypsin, fixed in 1% formaldehyde, and analyzed for GFP expression by flow cytometry. Data shown represent the number of GFP-expressing cells as a percentage of that of the control, set to 100% for each virus. Error bars represent 95% confidence intervals.
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20% infection after pH 7 treatment), 1.3 µl PIV5 stock diluted to 20 µl in Opti-MEM plus 1x SPG which is the medium used for HMPV propagation and freezing, or 1.4 µl of VSV diluted 1:100 in Opti-MEM and brought to a 20-µl volume in Opti-MEM plus 1x SPG were aliquoted into empty wells of a 24-well plate. Eighty microliters of 15 mM citric acid-150 mM NaCl buffer with a pH of either 4.1 or 7 was added to each virus in individual wells and then incubated at 37°C for 10 min. Next, 450 µl of Opti-MEM was added to each well. Confluent monolayers of Vero cells in a 24-well plate were washed twice, and 500 µl of each virus solution was distributed onto the cells. Ten hours (VSV) or 16 to 20 h postinfection, the cells were harvested and analyzed for GFP expression as described above. The quantities of low-pH buffer required to lower the pH of the original virus solution to pH 5 and then neutralize that solution with Opti-MEM were determined on a larger scale prior to the experiment. Homology modeling. DeepView/Swiss-PdbViewer v3.7 (www.expasy.org/spdbv/) was used to generate a model of the HMPV F protein from the molecular coordinates (mmdbId:37132) determined from the crystal structure of the prefusion form of PIV5 F (66). The HMPV F sequence was loaded to model on each monomer of PIV5 F and then fitted onto the structure. The three modeled HMPV F monomers were merged, and the merged structure was energy minimized with 100 steps of steepest descent.
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FIG. 1. Homology model of HMPV F based on the prefusion PIV5 F crystal structure. For all images, except the top right (H332), cyan indicates HRB, green indicates HRA, white indicates a fusion peptide, red indicates the P1 residue of the cleavage site, orange indicates N-linked glycosylation sites, and yellow indicates histidine residues. For the H332 image, red indicates monomer one, white indicates monomer two, and yellow indicates H332. In the middle right H368 image, dotted lines indicate predicted hydrogen bonds. For clarity, the side chains of all the residues, except single highlighted residues, have been removed.
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To examine the fusion activity of the histidine mutants, we performed a luciferase reporter gene assay (Fig. 2B). Vero cells were transfected with a wild-type or mutant F protein gene in a pCAGGS vector as well as a plasmid containing luciferase cDNA under the control of a T7 promoter. The Vero cells were then treated with trypsin to both detach them from the plates and cleave the HMPV F protein and were then overlaid onto BSR cells, which constitutively express the T7 polymerase. The mixed cell populations were briefly exposed to buffered pH 7 or pH 5 PBS twice to trigger fusion. Four hours later, luciferase activity, indicative of fusion between Vero and BSR cells, was measured. Interestingly, the only histidine mutant capable of promoting substantial levels of fusion when exposed to low pH was H368N (Fig. 2B). It is not surprising that H332A and H332N were unable to promote fusion under both neutral and low pH conditions, as these mutants did not appear to fold properly. Fusion promoted by the H368A mutant when exposed to low pH was only slightly above background levels, which could represent a defect in low-pH triggering of fusion considering that the surface expression of this mutant was similar to that of the wild type. On the other hand, the H368N mutant promoted fusion at levels similar to or slightly less than those of the wild type (Fig. 2B), suggesting that the protonation of H368 is not required for fusion promotion. However, this mutant displayed increased levels of cleaved F protein on the surface, which suggests that either this further increase in F1 surface expression does not correlate with increased fusion activity or that there is also a slight defect in fusion promotion by this mutant. Finally, both the H435A and H435N mutants demonstrated severely compromised fusion activity (Fig. 2B), which is interesting considering that the expression and cleavage of these mutants were very similar to the expression and cleavage of wild-type F (Fig. 2A). Fusion promoted by each of the histidine mutants was also examined in syncytium assays, in which polykaryon formation is observed microscopically following trypsin and low-pH treatment of transfected cell monolayers. The extent of the syncytium formation by each of the mutants was consistent with the reporter gene results (data not shown).
The lack of fusion promoted by mutants of H435, despite normal expression levels, suggests this HRB linker residue may be essential for the triggering of fusion by low pH. Our earlier results had demonstrated the increased stimulation of HMPV F-promoted fusion by pH levels below 5 (49). To test whether further decreases in pH would allow fusion promotion in the absence of an ionizable residue at position 435, fusions of the wild-type F protein and histidine mutants were compared at pH 5 and pH 4.5 (Fig. 3A and B). Fusions by the H435N and H368N mutants were stimulated approximately 50% by further reducing the pH to 4.5, a similar level of stimulation to that seen with the wild-type F protein. In contrast, fusion promoted by the H332N mutant was not stimulated by lowering the pH, as expected of a mutant whose fusion defect results from folding and surface expression defects (Fig. 2), thus confirming that the lowering of the pH has a specific effect on fusion. These results indicate that, while H435 plays an important role in the promotion of HMPV F fusion, residues in addition to H435 can participate in low-pH triggering of fusion.
The fusion defective phenotype of the H435 alanine and asparagine mutants, in light of their relatively normal appearance on a polyacrylamide gel, prompted us to examine this region of the protein further. As mentioned previously, the homology model of HMPV F indicates that H435 is surrounded by at least three basic residues, K295, R396, and K438 (Fig. 4A). We hypothesized that the protonation of H435 leads to electrostatic repulsion within this group of amino acids, which is at least partially responsible for triggering of the F protein conformational change. We therefore examined the cell surface expression and fusion of alanine mutants of each of these basic residues (K295A, R396A, and K438A). Our results indicate that the cell surface expression and proteolytic processing of each of the basic residue mutants are similar to those of the wild type (Fig. 4B), suggesting that the mutation of each of these basic residues individually does not significantly impact protein folding or transport. However, fusion promotion by each of these mutants is strongly reduced, with the K295A mutant showing background fusion levels and the K438A mutant promoting fusion just above that. The level of fusion promoted by the R396A mutant is approximately 50% of the wild-type levels (Fig. 4C), which is consistent with our structural model indicating that this basic residue is the furthest of the three from H435. These results suggest that each of these positive charges in the HRB linker region is important for the low-pH triggering of fusion.
The data presented here and in our previous publication strongly support a role for low pH in HMPV F protein-promoted fusion (49). However, as a paramyxovirus, it would be unusual for this virus to require low pH for cell entry. Thus, we chose to examine the importance of low pH in viral entry using a recombinant GFP-expressing HMPV virus with a codon-stabilized SH gene (6). Western blot analysis suggested that the vast majority of the F protein in the HMPV preparations was proteolytically processed during propagation; thus, infections were not carried out in the presence of trypsin. We first wished to determine if syncytium formation in virus-infected cells was stimulated by exposure to low pH. A lack of pronounced syncytium formation in HMPV-infected cells has been noted in several publications (1, 8, 12, 26, 34). The cells infected with HMPV at an MOI of 0.5 were therefore treated with or without TPCK-trypsin, followed by exposure to buffered pH 7 or pH 5 PBS, and examined for syncytium formation under a fluorescence microscope. As shown in Fig. 5, neither trypsin treatment nor low-pH exposure alone was sufficient to induce obvious syncytium formation. However, when infected cells were treated with trypsin to proteolytically process the HMPV F protein on the cell surface and then briefly incubated in low-pH buffer, there was extensive syncytium formation visible (Fig. 5). This shows that the presence of other viral proteins does not alter the low-pH stimulation of F protein-promoted cell-cell fusion and that the low-pH stimulation of fusion is not an artifact of our transient expression system.
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FIG. 5. Syncytium formation in HMPV-infected cells. A recombinant GFP-expressing HMPV was used to infect Vero cells (MOI = 0.5). Infected cells were incubated in Opti-MEM ± 0.3 µg/ml TPCK-trypsin at 32°C the day after infection, except when being treated with pH 5 or 7 PBS. Cells were treated with buffered pH 5 or 7 PBS four times throughout the day for 4 min at 37°C. Photographs were taken the next morning.
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Under the conditions described above, 100 nM and 200 nM doses of bafilomycin A1 resulted in a nearly complete inhibition of VSV infection and had no effect on the efficiency of PIV5 infection (Fig. 6A). Interestingly, bafilomycin A1 treatment of Vero cells resulted in an approximately 40% reduction in HMPV infection. Concanamycin A is a macrolide antibiotic similar in structure to bafilomycin A1, but concanamycin A is more specific and is as effective as bafilomycin A1 at lower concentrations (19). The effect of 5 nM and 10 nM doses of concanamycin A on infections of VSV and PIV5 was the same as that of bafilomycin A1, and concanamycin A resulted in an approximately 50% reduction in HMPV infection (Fig. 6B). Thus, two specific inhibitors of vacuolar acidification significantly impact HMPV infection, but the inhibitors do not completely block infection as they do VSV infection, suggesting that there are differences in the entry mechanisms of these viruses. Ammonium chloride, on the other hand, appeared to have only minor effects on the entry of HMPV in Vero cells, and doses that inhibited VSV infection affected PIV5 and HMPV infection to similar levels (Fig. 6C). However, the ionophore monensin inhibited HMPV infection while not significantly inhibiting PIV5 infection (Fig. 6D). Again, the effects of monensin were greater on VSV infection than on HMPV infection, with HMPV infection reduced by approximately 30% at the highest dose tested. Higher concentrations affected PIV5 infection as measured by GFP expression, thus likely impacting cell health.
Vero cells, which are monkey kidney cells, are a common cell type used in studies of viruses. We used Vero cells for the majority of our experiments because these cells are not significantly affected by the trypsin conditions needed to cleave the F protein. However, we wanted to examine the effect of endosomal acidification inhibitors in a more physiologically relevant cell type. Thus, we examined the effect of endosomal acidification inhibitors on HMPV infection in A549 cells, a human alveolar type II-like epithelial cell line, which others have characterized as a model to study lower airway epithelial cell responses to HMPV infection (3). Bafilomycin A1 and concanamycin A had the same effect on infection by all viruses in A549 cells that they had in Vero cells, except bafilomycin A1 had a somewhat larger effect on HMPV infection, reducing infection by approximately 50% in these cells (Fig. 7A and B). Interestingly, ammonium chloride also had a larger negative impact on HMPV infection in A549 cells, and in these cells, ammonium chloride did not inhibit PIV5 infection at any of the doses tested (Fig. 7C). Thus, optimal HMPV infection of human lower airway cells is significantly impacted by conditions that alter low pH in cellular vesicles.
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FIG. 7. Virus entry in A549 cells treated with inhibitors of endosomal acidification. Monolayers of A549 cells in 24-well plates were pretreated with a drug, bafilomycin A1 (A), concanamycin A (B), or ammonium chloride (C), or a vehicle control diluted in RPMI medium plus FBS at the concentrations indicated for 1.5 h. DMEM buffered with 20 mM HEPES was used for the ammonium chloride treatments. Infections were carried out in the presence of the drugs or the vehicle control such that 20 to 30% of the cells would be infected on average in control wells, and the cells were incubated for 4 h at 37°C. The cells were then washed and incubated in RPMI medium plus FBS for an additional 6 h (VSV) or 12 to 16 h (HMPV and PIV5) at 37°C. The cells were then detached with trypsin, fixed in 1% formaldehyde, and analyzed for GFP expression by flow cytometry. Data shown represent the number of GFP-expressing cells as a percentage of that of the control, set to 100% for each virus, from at least three separate experiments. Error bars represent 95% confidence intervals.
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FIG. 8. Low versus neutral pH pretreatment effect on virus infection. Eighty microliters of pH 4.1 or 7 citric acid buffer was added to each virus brought to 20 µl total volume in Opti-MEM plus SPG and incubated at 37°C for 10 min. The quantity of virus used resulted in 20 to 40% of the cells on average being infected. Next, 450 µl of Opti-MEM was added to neutralize the virus solution, and 500 µl of the final solution was used to infect monolayers of Vero cells in a 24-well plate. Ten hours (VSV) or 16 to 20 h (HMPV and PIV5) postinfection, the cells were detached with trypsin, fixed in 1% formaldehyde, and analyzed for GFP expression by flow cytometry. Data shown represent the number of GFP-expressing cells as a percentage of that of the pH 7 treatment, set to 100% for each virus, from four separate experiments. Error bars represent 95% confidence intervals.
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To further explore the potential role of endocytosis in HMPV entry, we examined the effect of dynasore, a small molecule inhibitor of dynamin (32), on HMPV entry. The addition of dynasore inhibited both VSV and HMPV entry when present 30 min prior to infection and during the first 2 h of infection (Fig. 9B; pre/during samples), indicating that dynamin is important for the entry of both of these pathogens. In contrast, the addition of dynasore for the same total length of time starting 2 h postinfection (Fig. 9B; post samples) resulted in only minor decreases in infection, demonstrating that the major role of dynamin is during the initial stage of infection. These results strongly support a role for endocytosis in HMPV entry, in contrast to the route of entry for the majority of paramyxoviruses.
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RSV and HMPV do differ in their mechanisms of F protein proteolytic activation. RSV F protein activation requires cleavage at two distinct furin sites (25), in contrast to the single furin site present in most F proteins. The HMPV F protein from the majority of strains lacks the ability to be efficiently processed by cellular proteases (47) and must undergo cleavage by extracellular proteases prior to fusion triggering. The absence of HMPV F protein proteolytic processing by intracellular proteases would provide additional control of triggering, preventing the premature activation of F protein in the lower pH environment of the secretory pathway prior to viral assembly. The subsequent cleavage of F protein in the virion by proteases such as the serine protease TMPRSS2 (51) would then be required prior to F protein triggering and function.
One important difference between RSV and HMPV is the effect of low pH on the efficiency of viral entry. RSV entry, though dependent on endocytosis, was not significantly affected by lysosomotropic agents (33). Our results indicate a 30 to 50% reduction in HMPV entry when intracellular pH is raised, suggesting that the low pH environment of the endosomal pathway can stimulate fusion and entry. The two major subtypes of HMPV, clade A and clade B, both contain multiple strains currently circulating in the human population, with clade A viruses often seen at a more prevalent rate (29). A recent report (27) found differences in the effect of pH on fusion promoted by HMPV F proteins from different strains. The F proteins from two clade A viruses, including the CAN 97-83 strain used in our study, showed strong stimulation by low pH, while one clade A F protein did not display fusion under any of the tested conditions. In contrast, the F proteins from two clade B viruses promoted equivalent levels of fusion at neutral and low pH (27). An analysis of the role of endocytosis for clade B viruses has not been performed to date, but these results suggest that the level of low-pH stimulation may differ between various HMPV strains.
Our experiments using specific inhibitors of the V-ATPase strongly indicate that exposure to low pH provides a potent stimulation of F protein fusion, resulting in more-efficient entry. However, we observed two thought-provoking results when various inhibitors of endosomal acidification were used to examine HMPV entry in parallel with pH-dependent and -independent control viruses: (i) ammonium chloride and monensin did not inhibit entry to the same extent as bafilomycin A1 and concanamycin A, and (ii) there was about a 50% maximum inhibition of HMPV entry with any drug, as opposed to the nearly complete inhibition of VSV entry.
A recent examination of Jaagsiekte sheep retrovirus entry also noted strong inhibition by bafilomycin A1 but weak inhibition by ammonium chloride (5). The authors of this recent study suggested that the difference might be due to the rapid recovery of endosomal pH following removal of the ammonium chloride (44), allowing for viral particles that were trapped in the endocytic pathway to then enter. However, bafilomycin A1 inhibition is also reversible (67). It is possible that viral particles may persist in vesicles for long periods (40), especially under high pH conditions when the activity of proteases in the lysosome is decreased. We did not detect a difference in HMPV inhibition by acidification inhibitors when the incubation time with the drug was extended to 6 h postinfection. However, we were unable to determine the effect of inhibitors on infection without removing the inhibitor at a time prior to analysis due to nonspecific effects on infection, as measured by decreased GFP expression in our negative control virus-infected cells. The initiation of GFP expression resulting from HMPV and PIV5 infection was not evident until more than 12 h postinfection, and it is likely that drug treatments for these extended periods had cytotoxic effects.
It is possible that the difference in the inhibitions of bafilomycin A1 and ammonium chloride is a consequence of their relative effectiveness in neutralizing the endosomal pH. Experiments measuring the pH in cellular vesicles during treatment with acidification inhibitors have found that neither type of inhibitor raises the pH of endosomes to neutrality unless excessive concentrations are used, and the effectiveness of bafilomycin A1 and ammonium chloride in raising the pH was often not equivalent and can depend on cell type (37, 42, 67). We have shown that HMPV F protein-promoted fusion increases steadily as the pH to which the protein is exposed decreases (49). This observation suggests that the probability of F protein triggering is inversely proportional to pH, and there is not a specific pH that must be reached in order for all F proteins to trigger. It is also likely that more than one F protein must undergo a conformational change in order for membrane fusion to occur (20). Therefore, some proteins may trigger in a neutral or near-neutral environment, perhaps following receptor binding, but low pH may facilitate fusion by increasing the number of F proteins to trigger. Thus, by raising the pH slightly, the inhibitors of endosomal acidification simply decrease the probability that enough F proteins will trigger to cause fusion before the virus is degraded. If the inhibitors raised the pH to different extents, the number of entry events would reflect the probability of F protein triggering under those conditions. It is important to note, however, that VSV entry, with a pH threshold of approximately 6.2 (45), was efficiently inhibited by all drugs tested. Thus, the endosomal pH was raised to at least this level with each of the tested agents. Since the triggering of HMPV fusion in cell-cell fusion systems was not significantly stimulated by pH treatments above 6, there are either differences in the pH requirements between cell-cell and virus-cell fusion or additional factors are at work. Further experiments will be needed to clarify this important point.
Alternatively, chemicals that alter the pH of endocytic vesicles have in some cases been shown to block the trafficking of certain cargo (4, 30, 59). It is possible that the specific V-ATPase inhibitors bafilomycin A1 and concanamycin A alter or block the trafficking of endocytosed HMPV such that the entry or postentry steps are disturbed and the effect of these drugs on infection is unrelated to pH. Further studies are necessary to determine if inhibition of the V-ATPase affects the trafficking of viral particles, and this information would be particularly important due to the widespread use of these inhibitors in studies of viral entry. However, RSV entry was shown to be no more affected by 10 nM bafilomycin A1 treatment than a control virus, and RSV appears to be a unique virus that requires endocytosis but not low pH for entry (33). Unless post-endocytic trafficking of RSV is unimportant, the lack of inhibition by bafilomycin A1 would suggest that this inhibitor does not affect trafficking in the system used.
The mutagenesis of histidine residues in the ectodomain of HMPV F revealed the importance of a residue in the HRB linker domain to low pH-induced fusion. Furthermore, several basic residues, which are structurally in close proximity to this histidine residue, also appear to facilitate the low pH-induced F protein conformational changes that are responsible for membrane fusion. Histidine residues are important in many biological reactions due to their propensity to ionize within the physiological pH range (63). We hypothesize that H435 of the HMPV F protein becomes protonated under low-pH conditions and that this protonation results in electrostatic repulsion between the histidine and neighboring lysine and arginine residues, thus destabilizing the prefusion conformation of the molecule. However, it is likely that other F protein residues contribute to low-pH triggering as well. The pKa of charged amino acid side chains is influenced by the local environment of the side chains, and the average number of side chain-associated protons can increase when the pH is lowered (28). Our analysis of histidine mutant fusion at pH 4.5 suggests that fusion can still be stimulated when the residue at position 435 is not capable of accepting a proton. Thus, H435, while important for fusion, is likely not the only residue that contributes to low-pH triggering of fusion.
Each of the F protein histidine residues is conserved in the subtypes of HMPV (62). The basic residues, with the exception of R396, which tolerated mutation better than the others, are also conserved. It is also interesting to note that modeling suggests there is a glycosylation site (N353), which we have verified is utilized, near H435 in the prefusion structure. The mutation of N353 resulted in defective proteolytic processing and a loss of fusion activity (49), and it is possible that there are interactions between the negative charges on this carbohydrate modification and the multiple positive charges in the vicinity that are necessary for protein stability. Finally, a change from a glycine to a glutamic acid residue at position 294 in clade B viruses has been correlated with the loss of low-pH stimulation of HMPV F fusion (27). Though the authors of this report suggest the proximity of residue G294 to histidine 368, our modeled structure indicates that G294 lies within 6 Å of H435 (but over 25 Å from H368). While it is unclear why the models differ, the close proximity of residue 294 to H435 in our model and its presence adjacent to the critical basic residue K295 strongly suggest that the effect of changes at position 294 on low-pH triggering of fusion relates to the alteration of the electrostatic interactions in the HRB linker region.
While further experiments are needed to more carefully define the endocytic route utilized by HMPV and the role of endocytosis in the entry of different strains of HMPV, our results and those of Kolokoltsov et al. (33) indicate that endocytic entry may be a common feature of members of the Pneumovirinae subfamily, in contrast to what has been reported for the Paramyxovirinae subfamily. The partial reduction in HMPV infection by the inhibitors of endosomal acidification is a novel observation and suggests that at least some strains of HMPV may have evolved to use the low pH of the endocytic pathway to enhance infectivity, although the role of low pH likely differs from classically described mechanisms.
This study was supported by predoctoral fellowship 0715355B from the Great Rivers affiliate of the American Heart Association, a research grant from the March of Dimes, and research grant 1R21AI074783-01 from the National Institutes of Health.
Published ahead of print on 26 November 2008. ![]()
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