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Journal of Virology, February 2009, p. 1359-1367, Vol. 83, No. 3
0022-538X/09/$08.00+0 doi:10.1128/JVI.01324-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.
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Department of Microbiology, Mount Sinai School of Medicine, New York, New York 10029
Received 24 June 2008/ Accepted 4 November 2008
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Under pressure from the immune system, pathogens have evolved elaborate strategies to subvert suppressive responses. Evolving alongside its host for millions of years, the human cytomegalovirus (HCMV) has committed a large percentage of its genome toward modulation of the cellular response to infection (21). HCMV manipulates the host environment to facilitate efficient infection and, ultimately, lifelong persistence. The HCMV unique short (US) genomic region encodes at least five glycoproteins that modulate major histocompatibility complex (MHC) class I molecule surface expression, thereby hindering antigenic presentation to cytotoxic T lymphocytes (CTL). The viral US3 glycoprotein binds and retains tapasin-dependent class I molecules within the endoplasmic reticulum (ER), preventing their egress to the cell surface (24). The US6 gene product prevents translocation of antigenic peptide by the transporter associated with antigen presentation (TAP) (8). US10 encodes a gene product that delays class I protein complex trafficking (5). The US2 and US11 proteins exploit the cellular process known as ER quality control to target class I heavy chains for proteasome degradation (12, 25). Through inhibition of antigenic peptide presentation, HCMV can prevent immune detection and clearance.
HCMV gene expression occurs in a tightly regulated cascade of immediate early, early, and late phases of replication (20). The immediate early transcription of US3 occurs between 2 and 8 h postinfection (1), while US2 expression begins at about 6 h postinfection during the early phase of replication (12). The appearance of both viral proteins coincides with the rapid destabilization of class I heavy chains in the infected cell (11). Coexpression of US2 and US3 leads to decreased surface class I protein and increased turnover of newly synthesized class I heavy chains. US3 retains class I molecules in the ER as targets for US2-mediated degradation and, furthermore, facilitates their interaction. The data presented here demonstrate a novel relationship between two immune modulators working collaboratively to promote viral subterfuge.
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Flow cytometry analysis and immunoprecipitation. Cells lysis and immunoprecipitation were carried out as described previously (23). Proteasome inhibitor (carboxylbenzyl-leucyl-leucyl-leucine vinyl sulfone [ZL3VS]) was a gift from H. Ploegh (Massachusetts Institute of Technology). Samples were resolved using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and subjected to immunoblot analysis. Quantitative flow cytometry analysis of surface MHC class I molecules was assessed as described previously (23) using a Cytomics FC 500 flow cytometer. Plots of surface class I proteins are represented by normalized cell number versus fluorescence signal.
Pulse-chase analysis. Pulse-chase analysis was performed as described previously (25). In brief, cells metabolically pulsed with [35S]Met for 15 min and chased up to 30 or 40 min were lysed and incubated with the appropriate antibody. Precipitates were resolved using SDS-PAGE, and the polyacrylamide gel was exposed to autoradiography film.
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FIG. 1. HCMV US2/US3 expression alters cell surface class I molecules. (A) Total cell lysates from U373-MG (U373), U373-MGUS2 (US2), U373-MGUS3 (US3), and U373-MGUS2/US3 (US2/US3) cells were subjected to immunoblot analysis using anti-US2 (lanes 1 to 4), anti-US3 (lanes 5 to 8), and anti-GAPDH (lanes 9 to 12) antibodies. US2, US3, GAPDH, and molecular size standards are indicated. (B) U373-MG, U373-MGUS2, U373-MGUS3, and U373-MGUS2/US3 cells were analyzed by flow cytometry using W6/32 monoclonal antibody followed by an anti-mouse immunoglobulin G (IgG)-Alexa 647. Surface class I protein plots are represented by normalized cell number versus fluorescence signal.
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80%) in surface class I molecules was observed in U373-MGUS2 cells (Fig. 1B, left panel). In comparison, U373-MGUS3 cells demonstrated similar levels of surface class I molecules as U373-MG cells (Fig. 1B, center panel), likely due to the transient retention of class I molecules and the half-life of surface class I molecules (7). Interestingly, HeLa cells (16) and normal human dermal fibroblasts (see Fig. S1 in the supplemental material) expressing US3 revealed a slight decrease in surface expression of class I molecules, highlighting the possibility that the effectiveness of US3 may slightly vary in different cell lines. Therefore, the U373-MG cells provide a good model system to examine the contribution of multiple US gene products that downregulate class I molecules. Strikingly, in U373-MGUS2/US3 cells, levels of class I molecules were considerably lower than in U373-MGUS2 or U373-MGUS3 cells (Fig. 1B, right panel). Presentation of surface class I molecules in U373-MGUS2/US3 cells was reduced by approximately 97%. These results demonstrate that US2 and US3 cooperate to downregulate surface class I molecules. Class I molecules are efficiently degraded in cells expressing US2/US3. We next investigated the stability of class I molecules in U373-MGUS2/US3 cells. Total cell lysates and W6/32 precipitates from U373-MG, U373-MGUS2, U373-MGUS3, and U373-MGUS2/US3 cells were subjected to immunoblot analysis (Fig. 2A). The class I heavy chains from U373 cells were used as a positive control (Fig. 2A, lanes 1 and 5). Levels of class I molecules were reduced in U373-MGUS2 cells (Fig. 2A, lanes 2 and 6), while increased amounts of class I heavy chain were observed in U373-MGUS3 cells (Fig. 2A, lanes 3 and 7). The US3 molecule's ability to retain class I molecules in the ER delays class I protein turnover (1). Strikingly, in U373-MGUS2/US3 cells, practically no class I molecules were recovered (Fig. 2A, lanes 4 and 8). These results suggest a synergistic effect imparted on degradation of class I molecules by expression of both US2 and US3.
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FIG. 2. US2/US3 cells demonstrate decreased levels of class I molecules. (A) W6/32 precipitates (lanes 1 to 4) and cell lysates (lanes 5 to 8) from U373-MG (U373), U373-MGUS2 (US2), U373-MGUS3 (US3), and U373-MGUS2/US3 (US2/US3) cells were subjected to an anti-class I heavy chain immunoblot. The asterisks indicate nonspecific polypeptides. (B) Class I molecules recovered from U373-MG, U373-MGUS2, U373-MGUS3, U373-MGUS11 (US11), and U373-MGUS2/US3 cells using W6/32 were left untreated or treated with EndoH and then subjected to an anti-class I heavy chain immunoblot. The arrows indicate a nonspecific polypeptide in EndoH-treated samples. Class I heavy chains (HCs), glycosylated [HC(+)CHO] and deglycoslyated [HC(–)CHO] class I molecules, and molecular standards are indicated.
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US2/US3 increase the degradation rate of class I molecules. To further define the impact of US3 upon US2-mediated downregulation, degradation kinetics of class I molecules were examined (Fig. 3A). U373-MG, U373-MGUS2, U373-MGUS3, and U373-MGUS2/US3 cells were labeled with [35S]methionine for 15 min and chased up to 30 min. Class I heavy chains from control U373-MG cells were stable over the chase period (Fig. 3A, lanes 1 to 3). As expected, the quantity of class I heavy chains from cells expressing US2 significantly decreased during the chase (Fig. 3A, lanes 4 to 6). Some class I heavy chains escaped degradation, as observed by the mature, slower-migrating proteins during the chase (Fig. 3A, lanes 5 and 6). In U373-MGUS3 cells, class I protein levels slightly increased over the chase period (Fig. 3A, lanes 10 to 12), indicative of ER retention. Unexpectedly, in U373-MGUS2/US3 cells, increased amounts of class I heavy chains were recovered from the 0-min chase point compared to U373-MGUS2 cells (Fig. 3A, compare lanes 4 and 7). However, the levels of class I molecules dramatically diminished during the chase (Fig. 3A, compare lanes 6 and 9, and B). Accelerated degradation of class I molecules occurred in U373-MGUS2/US3 cells despite lower levels of US2 protein (Fig. 3A, lanes 16 to 21). These results demonstrate that the degradation kinetics of class I heavy chains are increased in the presence of US2 and US3.
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FIG. 3. Enhanced class I heavy chain turnover in U373-MGUS2/US3 cells. (A) U373-MG (U373), U373-MGUS2 (US2), U373-MGUS3 (US3), and U373-MGUS2/US3 (US2/US3) cells were labeled with [35S]methionine for 15 min and chased for up to 30 min. Class I heavy chains, US2, and US3 proteins recovered from SDS lysates were resolved by SDS-PAGE and exposed to autoradiographic film. Class I heavy chains (HCs), US2, US3, and molecular standards are indicated. (B) Class I protein levels were quantified by densitometry by using the 0-min chase point as 100%.
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FIG. 4. Increased recovery of class I protein degradation intermediates from U373-MGUS2/US3. (A) Class I molecules recovered from U373-MG (U373), U373-MGUS2 (US2), U373-MGUS3 (US3), and U373-MGUS2/US3 (US2/US3)cells, either untreated or treated with ZL3VS (2.5 µM for 16 h), using anti-class I heavy chain serum (HC) were subjected to an anti-class I heavy chain immunoblot. Class I heavy chains, US2, US3, and molecular standards are indicated. (B) Class I protein levels were quantified by densitometry. Ig, immunoglobulin; HC(+)CHO, glycosylated class I heavy chain; HC(–)CHO, deglycoslyated class I heavy chain.
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67%) in surface class I molecules (Fig. 5A, top panel). The class I molecules are likely retained in the ER as a properly folded dimer (see Fig. S2A, lane 2, in the supplemental material). Interestingly, in U373-MG cells expressing US2 plus ICP47-HA (U373-MGUS2/ICP47-HA), surface class I molecules were also reduced by approximately 67% (Fig. 5A, bottom panel). The comparable levels of reduction in class I molecules in U373-MGICP47-HA and U373-MGUS2/ICP47-HA cells suggested that ICP47 imparted a downregulation that was distinct from US2. Hence, ICP47 probably targets a different pool of class I molecules (with or without peptide) than US2, suggesting that these two viral proteins function in an additive manner.
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FIG. 5. Nonspecific class I protein retention does not increase US2-mediated degradation. (A) U373-MG (U373), U373-MGICP47-HA, U373-MGUS2 and U373-MGUS2/ICP47-HA cells were subjected to flow cytometry using W6/32 antibody. The percentage of surface class I molecules from two independent experiments was calculated using the mean surface class I protein signal from ICP47-HA-expressing cell lines versus parental cells. (B) Class I molecules from U373-MG, U373-MGICP47-HA, U373-MGUS2 (US2), and U373-MGUS2/ICP47-HA (US2ICP47-HA) cells, either untreated or treated with the proteasome inhibitor ZL3VS (2.5 µM for 16 h), were recovered using anti-class I heavy chain serum and subjected to an anti-class I heavy chain immunoblot. (C) U373-MG, U373-MGE3/19K, U373-MGUS2, and U373-MGUS2-E3/19K (US2E3/19K) cells were subjected to flow cytometry using W6/32 antibody. The percentage of surface class I molecules from two independent experiments was calculated using the mean surface class I protein signal from E3/19K-expressing cell lines versus parental cells. (D) Total cell lysates from U373-MG, U373-MGE3/19K, U373-MGUS2, and U373-MGUS2-E3/19K cells, either untreated or treated with ZL3VS (2.5 µM for 16 h), were subjected to immunoblot analysis using anti-class I heavy chain (lanes 1 to 8) and anti-GAPDH (lanes 9 to 16) antibodies. Class I heavy chains, GAPDH, and molecular standards are indicated. IgG, immunoglobulin G; HC(+)CHO, glycosylated class I heavy chain; HC(–)CHO, deglycosylated class I heavy chain.
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To further address the specificity of US2/US3 collaboration, adenovirus-2 E3/19K glycoprotein was stably introduced into U373-MG (U373-MGE3/19K) and U373-MGUS2 (U373-MGUS2-E3/19K) cells. The E3/19K gene product binds to MHC class I proteins within the ER and attenuates their egress to the cell surface (2, 15). As was observed in cells expressing US3, flow cytometry revealed that there was no reduction in surface class I proteins in U373-MGE3/19K cells (Fig. 5C, top panel), a finding confirmed by immunoblot analysis (Fig. 5D, lanes 1 to 4). Interestingly, there was no appreciable reduction of surface class I protein levels in U373-MGUS2-E3/19K cells (Fig. 5C, bottom panel). Consistent with the ICP47 results, E3/19K expression did not produce an increase in dislocated, deglycoslyated class I protein intermediates in U373-MGUS2-E3/19K cells (Fig. 5D, lanes 5 to 8), providing further evidence of the particularity of US2/US3 cooperation. In addition, experiments performed using brefeldin A, a drug that impedes the movement of secretory proteins from the ER (22) and most closely mimics US3 retention, did not augment class I protein degradation in U373-MGUS2 cells (see Fig. S2 in the supplemental material). Collectively, the data suggest that US2 and US3 proteins specifically enhance class I destruction.
US3 prolongs the association of a class I molecule/US2 complex. Conceivably, US3 may augment US2-mediated class I protein degradation by enhancing the association between class I molecules and US2. Class I molecules were virtually completely downregulated in US2-expressing cells (Fig. 2A, lanes 2 and 6), making it difficult to recover substantial amounts of heavy chain molecules or to visualize an association between class I molecules and US2. Therefore, to determine whether US3 induces a stable US2/class I protein complex, we examined the interaction between class I molecules and a chimeric US2 mutant (US2/CD4/US2) that fails to mediate class I protein degradation (23). Expression of US3 and US2/CD4/US2 was confirmed by immunoblot analysis (data not shown). Precipitates of class I molecule from U373-MG, U373-MG cells expressing US2/CD4/US2 (U373-MGUS2/CD4/US2), U373-MGUS3, and U373-MGUS3-US2/CD4/US2 cells were subjected to immunoblot analysis (Fig. 6A, lanes 1 to 4). Only small amounts of US2/CD4/US2 were able to associate with class I molecules (Fig. 6A, lane 2), while in the presence of US3, the chimeric US2 mutant robustly bound to class I molecules (Fig. 6A, lane 4). The results suggest that US3 enhances a US2/class I protein interaction.
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FIG. 6. US3 protein enhances the association of US2 and class I molecules. (A) W6/32 precipitates from U373-MG (U373), U373-MGUS2/CD4/US2 (US2/CD4), U373-MGUS3 (US3), and U373-MGUS3-US2/CD4/US2 (US3-US2/CD4) cells were subjected to sequential immunoblot analysis using anti-class I heavy chain and anti-US2 serum (lanes 1 to 4). (B) U373-MG, U373-MGUS2/CD4/US2, U373-MGUS3, and U373-MGUS3-US2/CD4/US2 cells were metabolically labeled with [35S]methionine for 15 min and chased up to 40 min. Samples were lysed in 0.5% NP-40, and class I molecules were recovered using W6/32 (lanes 1 to 12). Class I heavy chains, US2, GAPDH, a nonspecific polypeptide (*), and molecular standards are indicated.
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During normal class I protein processing, the heavy chain and β2-microglobulin assemble within the ER. The class I heterodimer then engages the peptide loading complex, composed of the accessory proteins tapasin and TAP. Tapasin facilitates loading of the antigenic peptide onto the class I molecule, and the trimeric class I complex is competent to egress toward the cell surface. In an HCMV-infected cell, the US3 glycoprotein retains the class I molecule through a transient interaction for several hours until US2 expression (1). The class I molecule is then targeted by US2 for extraction from the ER membrane and subsequent degradation by the proteasome. Early US2 and US3 coordination creates an environment where few or no class I molecules traffic out of the ER, thereby preventing the presentation of HCMV-derived antigenic peptides. Although the functional significance of US2/US3 collaboration on the immune response remains to be seen, our data correlate with the notion that the virus employs extreme measures to inhibit early presentation of pp65 and IE1-derived peptides, which dominate the CTL response to HCMV (14, 27).
Association experiments performed with US2 chimeras further define the mechanism by which these two viral proteins collaborate (Fig. 6). US3 facilitates a tighter binding between class I molecules and US2, thereby guaranteeing that this immune modulator encounters and disposes of its target. The presence of US3 allows for a tighter and prolonged association of class I molecules with US2. Alternately, US3 binding to class I molecules may create a more accessible binding site for US2, thereby causing US2 to efficiently eliminate class I molecules. Both paradigms suggest that US3 retention of class I molecules generates a larger pool of potential substrates for US2-mediated class I protein degradation. Of most interest is the idea that US3 may augment the allelic specificity of US2. The decreased levels of surface class I molecules in U373-MGUS2/US3 cells implies that in the presence of US3, various alleles of class I protein could become substrates for US2-mediated degradation. This is in agreement with previous findings describing allele-specific differences for several HCMV US gene products (6, 18, 24). By coordinating their activities, US2 and US3 would allow the virus more effective coverage of a broad range of class I molecules. Of course, this could leave the infected cell susceptible to attack by NK (natural killer) cells (3). This is circumvented by the brief time of US3 transcription and by expression of inhibitors of NK cell activation (i.e., UL16 and UL40) (17). By engaging several immune evasion genes at multiple times during its replication cycle, the virus cleverly masks itself from lymphocyte attack while maintaining the appearance of normalcy at the cell surface.
This study was supported by NIH grants AI060905 and U19 AI62623. D.T. is partially supported by the Irma T. Hirschl Trust. V.M.N. is a predoctoral trainee supported by NIH grant AI060905-SI.
Published ahead of print on 12 November 2008. ![]()
Supplemental material for this article may be found at http://jvi.asm.org/. ![]()
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