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Journal of Virology, October 2008, p. 10071-10078, Vol. 82, No. 20
0022-538X/08/$08.00+0 doi:10.1128/JVI.01355-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Laboratory of Viral Diseases,1 Comparative Medicine Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 208142
Received 27 June 2008/ Accepted 3 August 2008
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VACV has a linear double-stranded DNA genome with nearly 200 predicted open reading frames (ORFs). Only a few of the approximately 90 genes that are conserved in all chordopoxviruses (25) remain largely uncharacterized. One such protein, encoded by the I5L ORF, was identified as a component of the mature virion (MV) membrane by N-terminal sequencing of the fraction solubilized from purified MVs with NP-40 and 2-mercaptoethanol (21). The association of I5 (the protein encoded by the I5L ORF) with sucrose gradient-purified MVs was corroborated by mass spectroscopy (2, 19, 26). Here, we show that I5 is expressed following viral DNA replication and is incorporated into the viral membrane at an early stage of morphogenesis. Despite its high conservation, I5 expression was not necessary or advantageous for virus replication and spread in a variety of cultured cells. Nevertheless, I5 was important for virus replication and virulence in a mouse model, suggesting a role in host interactions.
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Antibodies. Rabbit antisera were raised against peptides derived from amino acids 38 to 52 (FTMQSLKFNRAVTIF) of the predicted I5 sequence and from amino acids 632 to 643 (QYISARHITELF) of the A3 sequence plus a C-terminal cysteine required for coupling to keyhole limpet hemocyanin (Covance Research Products, Princeton, NJ).
Plasmid and recombinant VACV construction.
To construct the recombinant v
I5GFP, the flanking regions of the I5L ORF were amplified from VACV strain WR genomic DNA template using oligonucleotides ct66 (5'-CAT CAT CCA TTA GAA TTT TCA ATT CCA CTA GCG TCA AAA AAT TTC CTA CT-3'), ct68 (5'-CAT AGA AAA AAA CAA AAT GAA ATT CTT ATA TCT AAA AAT TAG ATC AAA GAA T3-'), ct69 (5'-ATG GAC GAG CTG TAC AAG TAA CGT CAA ATC CCT ATT AAT GAA AA-3'), and ct71 (5'-TCA TAC AAC TAT TTT GGT TTT AAA ACT TTG GAA AAA TCC TAC TTG TTG AAA-3'). The ORF for enhanced green fluorescent protein (GFP) under VACV promoter p11 was amplified from p
A43GFF (unpublished data) using primers ct67 (5'-ATT CTT TGA TCT AAT TTT TAG ATA TAA GAA TTT CAT TTT GTT TTT TTC TAT G-3') and ct70 (5'-TTT TCA TTA ATA GGG ATT TGA CGT TAC TTG TAC AGC TCG TCC AT-3'). Primers ct67 and ct68 as well as ct69 and ct70 were designed to complement each other. The above products were used in a second recombinant PCR to yield a GFP ORF flanked by regions up- and downstream of I5L. This construct preserved the last 28 nucleotides of the I5L ORF, which functions as a promoter for I4L. The resulting PCR product was gel purified and ligated into pCR-BluntII-Topo (Invitrogen, Carlsbad, CA), resulting in p
I5GFP. The endogenous I5L ORF was replaced with the GFP marker gene by homologous recombination after transfection (Lipofectamine 2000; Invitrogen) of p
I5GFP into VACV WR-infected cells. Recombinant viruses expressing GFP were detected with an inverted fluorescence microscope and isolated by three rounds of plaque purification. The correct site of recombination was verified by PCR analysis.
Recombinant vI5HA-GFP (where I5HA is I5 carrying a hemagglutinin [HA] epitope tag) was made in a similar manner as v
I5GFP. The primers ct81 (5'-CAT ACG ATG TTC CAG ACT ACG CTT AAG AAT TTC ATT TTG TTT TTT TCT A-3') and ct71 were used to amplify GFP under the p11 promoter from v
I5GFP, and primers ct82 (5'-TTC TTA AGC GTA GTC TGG AAC ATC GTA TGG GTA ACT TTT CAT TAA TAG GGA-3') and ct66 were used to amplify I5L from VACV strain WR genomic DNA template.
The I5 revertant virus (vI5Rev) and an I5 frameshift virus (vI5Stop) were derived from v
I5GFP. Primers ct66 and ct71 were used to generate a PCR product containing the I5L gene including 500 bp of up- and downstream sequence. The resulting PCR product was gel purified and ligated into pCR-BluntII-Topo, resulting in pI5Rev. Homologous recombination was used to replace the GFP marker gene with the endogenous I5L ORF after transfection of pI5Rev into cells infected with v
I5GFP. Non-GFP-expressing plaques were picked and isolated by three rounds of plaque purification. The correct site of recombination was verified by PCR and sequence analysis. A stop codon was generated in the I5L sequence of pI5Rev by using a QuickChange site-directed mutagenesis kit (Stratagene, La Jolla, CA) with PCR oligonucleotides containing the desired mutation. Primers ct91 (5'-GCA TAA CTG TAT TAA TGC TTT TGA TGT AAT TTC TGG TGC CGC CCT G-3') and ct92 (5'-CAG GGC GGC ACC AGA AAT TAC ATC AAA AGC ATT AAT ACA GTT ATG C-3') were used to delete nucleotide 61, resulting in an immediate stop codon. Homologous recombination was used to replace the GFP marker gene with the I5Stop sequence after transfection of pI5Stop into v
I5GFP-infected cells. Again, non-GFP-expressing plaques were picked and isolated by three rounds of plaque purification. The correct site of recombination was verified by PCR and sequence analysis.
SDS-PAGE. Cells were lysed in 0.2% NP-40 (10 mM Tris, pH 7.4, 10 mM CaCl2, 10 mM NaCl) containing 8 µg/ml micrococcal nuclease (Worthington Biochemical Corp., Lakewood, NJ) at 4°C for 20 min. After addition of lithium dodecyl sulfate sample buffer and reducing agent (Invitrogen, Carlsbad, CA), cell lysates were heated to 70°C for 10 min. Equal volumes of lysate were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) on a 10% bis-Tris-MES [2-(N-morpholino)ethanesulfonic acid]-SDS running buffer (Invitrogen).
Western blot analysis. Proteins separated by SDS-PAGE were electrophoretically transferred to polyvinylidene difluoride membrane (Invitrogen). Membranes were blocked in Tris-buffered saline with 5% nonfat dry milk and 0.05% Tween 20 and then incubated with antibodies for 1 h at room temperature or overnight at 4°C. Protein bands were visualized by chemiluminescence using West-Pico or Dura kits (Pierce Biotechnology Inc., Rockford, IL).
Analysis of virion extracts. VACV MVs, purified by two sucrose cushions and one sucrose gradient centrifugation from cells infected with vI5HA-GFP, were incubated at 37°C for 1 h in 50 mM Tris (pH 7.4) or in 1% NP-40 in 50 mM Tris (pH 7.4) in the presence or absence of 50 mM dithiothreitol (DTT). Soluble and insoluble fractions were separated by centrifugation at 30,000 x g for 30 min and resuspended to equal volumes in sample buffer containing lithium dodecyl sulfate. Equivalent amounts of each fraction were loaded on a 10% polyacrylamide gel and subjected to electrophoresis. The separated proteins were transferred to a polyvinylidene difluoride membrane and analyzed by Western blotting as described above.
Confocal microscopy. HeLa cells were grown on glass coverslips in 12-well plates. Cells were infected at multiplicity of 0.5 PFU per cell. At 24 h postinfection, cells were fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS) for 7 min at room temperature, washed three times with PBS, and then permeabilized for 10 min with 0.1% Triton X-100 in PBS at room temperature. Cells were blocked for 1 h with 10% fetal bovine serum in PBS, followed by incubation with primary antibody at room temperature. Cells were washed three times in PBS, followed by incubation with Alexa Fluor 594-conjugated secondary antibody (Invitrogen) at room temperature. After cells were washed three times with PBS, DNA was stained with 4'-6'-diamidino-2-phenylindole (DAPI), and coverslips were mounted on slides with Mowiol. Images were collected with a Leica TCS-NT/SP2 inverted confocal microscope system.
Electron microscopy. BS-C-1 cells were grown in dishes of 60-mm diameter and infected with 5 PFU of virus per cell for 20 h. Cells were prepared for conventional transmission electron microscopy by fixing with 2% glutaraldehyde and embedding in EmBed-182 resin (Electron Microscopy Sciences, Hatfield, PA). Alternatively, cells were fixed with 4% paraformaldehyde-0.05% glutaraldehyde in 0.1 M phosphate buffer for 1 h at room temperature and incubated in 10% gelatin at 37°C. The cell pellet was collected by centrifugation, solidified on ice, cut at 4°C into small cubes infiltrated with 2.3 M sucrose in 0.1 M phosphate buffer, frozen on pins in liquid nitrogen, and cut into 70-nm sections on a Leica Ultracut FCS microtome (Wetzlar, Germany). Cryosections were picked up on grids, thawed, washed free of sucrose, and stained with a monoclonal antibody to a HA epitope tag (Invitrogen) followed by rabbit anti-mouse immunoglobulin G (IgG) and protein A conjugated to 10-nm gold spheres. Specimens were viewed with an FEI-CM100 transmission electron microscope (Hillsboro, OR).
Determination of virulence in mice. Female BALB/c mice were purchased from Taconic (Germantown, NY) and maintained in a pathogen-free environment in sterile microisolator cages. Groups (n = 10) of 7-week-old mice were anesthetized by inhalation of isoflurane and inoculated via the intranasal (i.n.) route with a 20-µl suspension of purified VACV into one nostril. Mice were weighed daily for 2 weeks following challenge and were euthanized when they lost 30% of their initial body weight, according to a protocol approved by the National Institute of Allergy and Infectious Diseases Animal Care and Use Committee. Inoculum titers were determined in order to confirm the dose administered.
Titration of virus from lung. Lungs were removed from mice that had been infected i.n. with 1 x 104 PFU of vI5Stop or vI5Rev; lungs were placed in 2 ml of PBS with 0.05% bovine serum albumin and kept at –80°C until use. Lungs were thawed and ground until a uniform homogenate was formed, frozen and thawed three times, and sonicated three times for 30 s. Viral titers were determined by plaque assay on BS-C-1 cells.
Histological analysis. A total of 17 mice were infected i.n. with 1 x 104 PFU of vI5Stop or vI5Rev and necropsied on days 3, 5, 7, and 10. Lungs were inflated with 10% neutral buffered formalin, and other tissues were also fixed in formalin and embedded in paraffin, and sections were stained with hematoxylin and eosin. Whole lung sections were prepared from each mouse. Histopathological changes in the nasal cavity were graded in a random, blinded fashion as to extent of tissue involvement and severity, with grades of 1 to 4 as indicated in the legend of Fig. 10. For immunohistochemistry, a rabbit polyclonal antibody (4) was used at 1:2,000, followed by the Mach 4 horseradish peroxidase polymer (Biocare Medical, Concord, CA) and diaminobenzidine.
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FIG. 10. Graded lesions of nasal epithelium on indicated days after infection with vI5Stop and vI5Rev. Two to three sections of the nasal cavity (including the squamous, respiratory, and olfactory regions of the epithelium) from each of the 17 mice in this study were stained with antibody to vaccinia virus. The entire slide was scanned to make a virtual computerized slide and a section representing average antigen expression for each mouse was selected. After an initial examination, grading was done in a random blinded fashion as follows: 0, no stained foci seen; 1, few positive focal areas; 2 several positive foci or large positive areas; 3, many positive foci or larger positive areas; 4, numerous coalescing positive areas.
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FIG. 1. Hydrophilicity of I5 and multiple sequence alignment of orthologs. (A) Hydrophilicity plot (9) of VACV I5. (B) A multiple sequence alignment was constructed using Jalview (3). Sequences from eight orthopoxvirus species and one or more representatives of other chordopoxvirus genera were included in the alignment. Shading increases with the degree of amino acid conservation. The percent identities between VACV WR074 and orthologs are listed on the right. Abbreviations: CPXV, cowpox virus; HSPV, horsepox virus; TATV, taterapox virus; CMLV, camelpox virus; ECTV, ectromelia virus; VARV, variola virus; MPXV monkeypox virus; TANV, tanapox virus; YMTV, yaba monkey tumor virus; ORFV, orf virus; LSCV, lumpyskin disease virus; MOCV, molluscum contagiosum virus; SWPV, swinepox virus; YLDV, yaba-like disease virus; FWPV, fowlpox virus.
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FIG. 2. Synthesis of I5 and MV membrane localization. (A) I5 expression kinetics. BS-C-1 cells were infected with vI5HA-GFP at a multiplicity of 15 PFU per cell. At the indicated hours postinfection, cell extracts were prepared and analyzed by SDS-PAGE and Western blotting with antibody to the HA epitope tag. Masses (in kDa) of marker proteins are on the left. The blot was stripped and reprobed with antibody to the A3 protein, which appears as a doublet due to processing during virus maturation. M, mock infected. (B) Extraction of I5 from MVs. Sucrose gradient-purified vI5HA-GFP MVs were treated with NP-40 or NP-40 and DTT or mock treated and separated into soluble (S) and pellet (P) fractions. Proteins in both fractions were resolved by SDS-PAGE, followed by Western blotting with antibody to HA, A3, or L1 as indicated.
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Localization of I5 to viral factories and assembling virions.
Confocal microscopy was performed to determine whether I5 associates with cellular membranes in addition to virions. Following infection with vI5HA-GFP, cells were fixed, permeabilized, and stained with antibody to the HA tag, followed by a fluorescently labeled secondary antibody. Cytoplasmic factories, the site of viral DNA replication and virion assembly, were visualized by staining with DAPI, which forms fluorescent complexes with double-stranded DNA. At late times after infection, factories may appear pleomorphic but are typically located adjacent to the nucleus, which also stains with DAPI. The I5 protein colocalized with viral factories (Fig. 3), consistent with incorporation into virus particles. As a control, no specific antibody staining was found when cells were infected with an I5L deletion mutant (v
I5GFP) to be described below (Fig. 3).
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FIG. 3. Localization of I5 in cytoplasmic viral factories. HeLa cells were infected with vI5HA-GFP or v I5GFP at a multiplicity of 0.5 PFU per cell. After 24 h, cells were fixed, permeabilized, and stained with anti-HA monoclonal antibody, followed by Alexa Fluor 594-conjugated anti-mouse antibody (red). DNA was stained with DAPI (blue). Images were viewed by confocal microscopy. Arrows indicate viral factories.
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FIG. 4. Immunogold labeling of I5 associated with immature virions and MVs. BS-C-1 cells were infected with vI5HA-GFP at a multiplicity of 5 PFU per cell. After 18 h, the cells were fixed and frozen. Thawed cryosections were incubated with mouse monoclonal antibody to HA, rabbit IgG to mouse IgG, and then with 10-nm diameter gold particles conjugated to protein A. Electron microscopic images are shown with a 100-nm scale bar. IV, immature virions; WV, wrapped virions; EV, enveloped virions.
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I5GFP and VACV WR on BSC1, BHK, CV-1, HeLa, HuTK–, and RK13 cells and on primary human epidermal keratinocytes, indicating normal virus replication and spread (data not shown). Moreover, the yields of v
I5GFP and VACV WR in BS-C-1 cells were similar (data not shown). In addition, the morphologies of cells infected with the deletion mutant and wild-type virus were similar, without signs of nuclear fragmentation or cytoplasmic blebbing.
Depending on the site of insertion, expression of GFP from a strong promoter can have subtle effects on virus replication, and this is particularly important if in vivo studies are planned. Therefore, we derived two additional viruses. Homologous recombination was used to replace the GFP ORF of v
I5GFP with either the wild-type I5L ORF to generate the control vI5Rev or with the I5L ORF containing a deletion of nucleotide 61, resulting in an immediate stop codon, to generate vI5Stop. In both cases recombinant virus plaques were recognized by the absence of green fluorescence and clonally purified. PCR and DNA sequencing confirmed the expected genome alterations. As expected, I5 could not be detected by Western blotting of lysates of cells infected with either v
I5GFP or vI5Stop, indicating premature translational termination in the latter case (Fig. 5C). The plaque sizes and virus yields of vI5Stop and vI5Rev were indistinguishable (Fig. 5A and B). Furthermore, all stages of morphogenesis appeared normal as determined by transmission electron microscopy (Fig. 6).
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FIG. 5. Comparison of vI5Stop and vI5Rev replication. (A) Plaque phenotypes of vI5Rev and vI5Stop. Monolayers of BS-C-1 cells were infected with vI5Rev or vI5Stop. After 48 h, cells were fixed and stained with crystal violet. (B) One-step growth curves of vI5Rev and vI5Stop. BS-C-1 cells were infected with vI5Rev or vI5Stop at a multiplicity of 10 PFU per cell. Virus yields were determined from 2 to 24 h postinfection by plaque assay. (C) Western blots. Proteins in lysates of cells that were infected with v I5GFP (lane 1), vI5HA-GFP (lane 2), vI5Stop (lane 3), or vI5Rev (lane 4) were resolved by SDS-PAGE and analyzed by Western blotting with rabbit polyclonal antibody to I5. The bars indicate the positions of I5HA and unmodified I5.
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FIG. 6. Transmission electron microscopy of cells infected with vI5Stop and vI5Rev. BS-C-1 cells were infected with vI5Stop or vI5Rev at a multiplicity of 5 PFU per cell. At 20 h after infection, the cells were fixed and prepared for electron microscopy. Electron microscopic images are shown with a 200-nm scale bar. IV, immature virions; WV, wrapped virions; EV, enveloped virions.
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I5GFP and vI5Stop to replicate in cultured cells. We therefore considered the possibility that I5 has a role in host interactions that might be discerned only in vivo. An i.n. mouse model of infection (24) was used to determine if expression of I5 is important for virulence. Groups of 10 mice received 104, 105, or 106 PFU of vI5Rev or vI5Stop i.n. under anesthesia. Weight change and survival were recorded daily and compared to an uninfected control group. All mice that received 1 x 104 PFU of vI5Stop survived and exhibited less severe weight loss (P = 0.0003, day 7; Mann Whitney test) than mice that received the same amount of vI5Rev (Fig. 7). More decisively, mice that received 1 x 105 PFU of vI5Stop had a 90% survival rate while mice that received 1 x 105 PFU of vI5Rev had a 0% survival rate(Fig. 7A). However, with a challenge dose of 1 x 106 PFU, there were no survivors in any of the groups (data not shown). Thus, I5 is important for virulence although vI5Stop was still lethal at a high dose.
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FIG. 7. Virulence of vI5Stop and vI5Rev in mouse i.n. infection model. Groups of 10 BALB/c mice were inoculated intranasally with 104, 105, or 106 PFU of purified vI5Stop or vI5Rev. (A) Percent survival of mice. (B) Percentage of original weight of mice. WC, untreated and uninfected weight control. Symbols in panels A and B are the same.
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FIG. 8. Virus titers in the lungs of infected mice. BALB/c mice were inoculated i.n. with 1 x 104 PFU of purified vI5Stop or vI5Rev. Lungs were excised, weighed, and then titers were determined by plaque assay to determine virus load. (A) Viral titers per gram of lung tissue obtained on days 3, 5, and 7. Titers were determined on lungs from three mice infected with each virus, and standard errors of the mean are indicated. (B) Lung weights and viral titers on day 7. Lung weights, viral titer/lung, and viral titer/gram of lung are plotted. Titers were determined on lungs from 10 mice infected with each virus, and standard errors of the mean are shown. A Mann Whitney t test yielded a P value of 0.005 in a comparison of the lung weights from mice infected with the two viruses and a P value of 0.0002 in a comparison of the viral titer/gram of lung from the two viruses.
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FIG. 9. Immunostained sections of nasal epithelium and lung from infected mice. Mice were infected i.n. with 1 x 104 PFU of vI5Stop or vI5Rev. Nasal sections and lung tissue were fixed in formalin and paraffin embedded. Histochemistry was performed with an antibody to VACV proteins. Images are at a magnification of x100. (A) Nasal epithelium infected with vI5Stop at day 7. Note the focus of infection stained brown. (B) Nasal epithelium infected with vI5Rev at day 7. Note the extent of the lesions and abundant antigen. (C) Lung infected with vI5Stop at day 5 showing one bronchiole infected with associated necrosis and inflammation. (D) Lung infected with vI5Rev at day 5 showing three bronchioles infected.
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In anesthetized mice, the i.n. route results in primary infections in the upper and lower respiratory tracts, and the latter has been associated with morbidity and death (7, 10, 11, 13, 18). With a nonlethal dose of 104 PFU, on day 3 the lung titers of the I5L frameshift mutant and control VACV were similar, suggesting that the mutant virus was able to initially infect and replicate there. However, by day 7 the titer in mouse lungs of the mutant was approximately 3 logs lower than the control, indicating less progression or more rapid clearance of the mutant. Examination of histological sections also indicated necrosis of the epithelium and underlying glandular tissue in the nasal passages of both the I5L mutant and the control virus at early times. However, there was less progression of the infection with the mutant virus than with the control virus and considerable recovery between days 7 and 10 relative to the control virus.
Our data suggest that I5 is involved in repelling the host antiviral defense though we cannot rule out some differences in cell tropism in vivo. Indeed, the latter would make sense in view of the location of I5 in the MV membrane. Further studies with a variety of primary mouse cells may help to evaluate this possibility. There have been a number of reports indicating that VACV triggers signaling pathways during the attachment or entry stage of infection (12, 14, 17), which could be mediated or partially suppressed by an MV membrane protein. Some information regarding these possibilities might be obtained in follow-up studies by analysis of inflammatory cells and cytokines in mouse lung washes as well as in in vitro studies. The I5 protein is largely composed of two hydrophobic domains that presumably serve as transmembrane segments. There is a highly conserved 18-amino-acid sequence located between the two helices that could be an interaction domain for some cellular protein, and efforts to test this hypothesis are planned. A14.5, an even smaller conserved MV membrane protein of only 53 amino acids with a similar predicted topology, is also nonessential in cell culture but is required for virulence (1). It will be interesting to see if these two proteins have related roles.
The work was supported by funds from the Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health.
Published ahead of print on 13 August 2008. ![]()
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