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Journal of Virology, September 2008, p. 9134-9142, Vol. 82, No. 18
0022-538X/08/$08.00+0 doi:10.1128/JVI.00394-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

The Scripps Research Institute, Department of Molecular Biology, La Jolla, California,1 Public Health Research Institute, Newark, New Jersey,2 The University of Texas M. D. Anderson Cancer Center, Department of Immunology, Houston, Texas,3 Custom Monoclonals International, Inc., West Sacramento, California4
Received 23 February 2008/ Accepted 25 June 2008
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Similar to T-cell-tropic HIV type 1 (HIV-1), FIV utilizes CXC chemokine receptor 4 (CXCR4) as an entry receptor for infection (48, 50), after interaction with a primary binding receptor (14). Also, the overall genetic structure of FIV is similar to that of HIV (33, 37, 45), and the FIV env gene encodes a surface glycoprotein (SU or gp95) and a transmembrane protein (TM or gp41). The SU protein exhibits considerable amino acid sequence variation, with five consensus major variable (V) regions (V1 to V5) (36, 37). Of these domains, the V3 loop has been identified as a major immunogenic domain in SU by epitope mapping with sera from infected cats (3, 18, 29, 34).
Studies of FIV-PPR interactions with CD134 have identified specific amino acids involved in SU binding in the outermost domain 1 of CD134 (11). Recent studies have indicated the involvement of additional residues in domain 2 in binding of certain other strains of FIV (49). For SU interaction with its entry receptor, CXCR4, involvement of the second extracellular loop of CXCR4 has been reported (5, 47). However, the domains of SU involved in direct interaction with CXCR4 have not been identified.
The purpose of this study was to define the domains of SU that are crucial for the interaction with CXCR4 in order to better understand the mechanism of FIV entry and infection. Analysis of genetic variations in SU proteins of FIV, simian immunodeficiency virus, and HIV-1 has revealed analogies in the locations and distribution of the variable domains V3, V4, and V5 (35). A structural model of FIV SU identified these variable domains as potential exposed loop segments (36). A segment, denoted loop II (L2), in the N-terminal part of FIV SU has also been predicted to fold as an exposed loop (36). As a step toward a better understanding of the molecular interaction between FIV and its target cells, we created SU mutants with deletions of L2, V3, V4, or V5. These mutants were used together with a panel of SU-specific monoclonal antibodies (MAbs) in SU-CXCR4 binding studies. Using nested V3 peptides and site-directed mutagenesis, the CXCR4 binding region of SU was further localized to a discrete stretch of nine amino acids at the predicted tip of the V3 loop, with critical involvement of serine 393 and tryptophan 394 to facilitate binding and virus entry into the target cell.
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FIV-PPR is a molecularly cloned clade A primary isolate (37).
Recombinant SU proteins. Deletion mutants of FIV-PPR SU were generated using PCR-ligation-PCR mutagenesis (1). Briefly, fragments of FIV-PPR SU were joined after amplification in separate PCRs. The PCR primers used for these reactions were designed to contain a blunt-ended restriction enzyme site, and products from the initial PCRs were digested with the corresponding restriction enzymes, gel purified, and ligated. A fraction of each ligation reaction mixture was then used to amplify the ligated DNA by a second PCR, using the 5' primer for the upstream fragment and the 3' primer for the downstream fragment. The PCR products were then subcloned into pRSC-GS-SU-Fc (13), followed by sequencing to confirm the presence of the desired deletion and the absence of any other mutation. The pRSC-GS-SU-Fc delMut plasmids were then used for production of stable CHO-K1 cell lines, as previously described (13), expressing SU-Fc fusion proteins (adhesins) with the desired deletions. Fc (13) or SU-Fc proteins from stable CHO cell supernatants were purified by affinity chromatography over protein A-Sepharose and quantitated as described previously (13). The following amino acids were removed in the SU deletion mutants: delL2, amino acids 249 to 353; delV3, amino acids 378 to 416; delV4, amino acids 463 to 499; and delV5, amino acids 535 to 560). All deletions were constructed with the amino acids serine-glycine-glycine as a linker.
Western blot analysis. Purified Fc and Fc-tagged fusion proteins were loaded on an 8 to 16% sodium dodecyl sulfate (SDS)-polyacrylamide gel, and the presence of SU-Fc proteins was revealed by Western blotting with a peroxidase-conjugated goat antibody specific for human immunoglobulin G (IgG) Fc (Pierce, Rockford, IL).
Flow cytometry analysis. Binding of SU-Fc fusion proteins or Fc (negative control) to the surfaces of 3201 cells, 104-C1 cells, or PBMCs was analyzed by flow cytometry, using a phycoerythrin-conjugated goat anti-human IgG1 Fc antibody (MP Biomedicals, Aurora, OH) and FLOWJO software (Tree Star, San Carlos, CA). CXCR4-specific binding was confirmed by preincubation of cells with the CXCR4 inhibitor AMD3100 (obtained through the AIDS Research and Reference Reagent Program) (10) at 1 µg/ml (1.3 µM) for 0.5 h at 25°C. For inhibition studies, antibodies or peptides were preincubated with the SU adhesin or cells, respectively, at the indicated concentration for 0.5 h at 25°C. Percent inhibition was calculated as previously described (11) and expressed as follows: +++++, 90 to 100% inhibition; ++++, 70 to 90% inhibition; +++, 50 to 70% inhibition; ++, 30 to 50% inhibition; +, 10 to 30% inhibition; and –, 0 to 10% inhibition.
Preparation of pseudovirions and virus entry assays. Production of pseudovirions that were pseudotyped with either wild-type (wt) SU or SUs in which specific deletions or point mutations had been introduced was performed as previously described, using a beta-galactosidase (β-Gal)-expressing packaging vector termed pCFIV (11). Point mutations were performed using the QuikChange site-directed mutagenesis strategy (Stratagene, La Jolla, CA) as recommended by the manufacturer. Each pseudovirion was assessed for the level of reverse transcriptase (RT) in the supernatants of transfected 293T cells. RT values were then normalized before assessing infection of Gfox (CXCR4+ CD134+) target cells in single-round infections as described previously (11).
ELISA. All enzyme-linked immunosorbent assay (ELISA) operations were carried out at room temperature. Immulon II HB plates (Thermo, Milford, MA) were coated overnight with 100 ng purified SU deletion construct proteins in phosphate-buffered saline, pH 7.2. Plates were then washed twice with saline and tap dried. ELISA buffer (100 µl of 0.15 M NaCl, 0.05 M Tris-HCl, 1 mM EDTA, 3% bovine serum albumin fraction V, 3.5% fetal calf serum, and 0.05% Tween 20, pH 7.4) was added to all wells. Staphylococcal protein A purified MAb (100 µl in 20 µg/ml ELISA buffer) was added to the first well of each row (total volume, 200 µl). The contents of the first well were then twofold serially diluted over eight wells, resulting in a dilution series from 1,000 ng/100 µl in the first well to 8 ng/100 µl in the last well. Plates were incubated for 45 min, washed three times, and tap dried. Goat anti-mouse IgG-horseradish peroxidase (Bio-Rad, Hercules, CA) was diluted 1:1,000 in ELISA buffer, and 100 µl/well was added; the plates were incubated for 45 min, washed three times, and tap dried. The substrate (15 ml/plate, for 150 µl per well) used was o-phenylenediamine (Sigma), as follows: 20 mg was dissolved in 15 ml of 50 mM citric acid and 100 mM dibasic sodium phosphate, pH 5.0, and activated with 80 µl per plate hydrogen peroxide (30% solution; Fisher Scientific). The reaction proceeded for 8 min and was then stopped by the addition of 50 µl/well 2.0 M sulfuric acid. The reaction color was read at 493 nm.
Peptide synthesis. Peptides were synthesized on a PTI Symphony multiple peptide synthesizer utilizing standard 9-fluorenylmethoxy carbonyl chemistry. Crude peptide material was purified by high-pressure liquid chromatography, and purity was determined to exceed 90% for all material. The masses of peptides were confirmed by mass spectrometry.
Infections. Cells were seeded at 3 x 104 cells per well in a 96-well plate and infected for 2 h at room temperature with 20 µl virus stock. Cells were then washed once and incubated in cell medium until day 7, when supernatants were analyzed for virus production by using a micro-RT assay as described below. For analysis of V3 peptide inhibition of infection, cells were preincubated for 30 min with peptides before infection and throughout the incubation time.
Micro-RT activity assay. The micro-RT activity assay was performed as previously described (13, 15). Briefly, 50 µl of cell-free supernatant was incubated for 10 min at room temperature with 10 µl of lysis buffer (0.75 M KCl, 20 mM dithiothreitol, 0.5% Triton X-100). Forty microliters of a mixture containing 125 mM Tris-HCl (pH 8.1), 12.5 mM MgCl2, 1.25 µg poly(rA)-poly(dT)12-18 (Amersham Biosciences, Piscataway, NJ), and 1.25 µCi of [3H]dTTP (DuPont, Boston, MA) was added to the sample, followed by 2 h of incubation at 37°C. RT activity was measured as previously described (15).
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FIG. 1. Construction (a) and expression (b) of FIV SU-immunoadhesins with deletions of variable domains. Recombinant deletion mutants of FIV SU-Fc were generated by PCR-ligation-PCR mutagenesis, expressed by stable transfection of CHO-K1 cells, and batch purified from cell supernatants by affinity chromatography over protein A. (b) Samples (500 ng) of SU-Fc (wt and deletion mutants) and Fc protein were subjected to SDS-polyacrylamide gel electrophoresis under reducing conditions and immunoblotted with an antibody specific for human IgG1 Fc (anti-Fc).
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FIG. 2. Binding of FIV SU-Fc deletion mutants to cell surface CXCR4 was detected by FACS, using a phycoerythrin-conjugated anti-Fc antibody. (a) FACS-detected binding of wt and deletion mutants of SU-Fc to CXCR4 on 3201 cells in the presence and absence of the CXCR4 antagonist AMD3100. CXCR4-specific binding is evident after deletion of L2, V4, and V5, but deletion of V3 abolishes SU binding to CXCR4. Cells were incubated with Fc protein (solid gray areas) or wt or deletion mutants of SU (gray lines) or preincubated with AMD3100 (black lines) before the addition of wt or deletion mutants of SU. Results are representative of three independent determinations. (b) Production and infection analysis of β-Gal-expressing pseudovirions with deletions in SU. Supernatants from transfected 293 cells were analyzed for RT activity 48 h after transfection. RT values were normalized for wt and deletion mutants, and supernatants were then used in single-round infections of CD134- and CXCR4-expressing CrFK cells (Gfox cells). β-Gal activity was then analyzed 48 h after infection. None of the deletion mutants were able to facilitate virus entry, consistent with the failure to bind CD134.
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Virtually all SU binding observed by fluorescence-activated cell sorting (FACS) analysis of 104-C1 T cells (CD134hi CXCR4lo) is via binding to CD134, and binding is not significantly inhibited by AMD3100 (ref 13, 14, 16). Thus, this cell line serves as a venue for measuring CD134 binding by SU, with a negligible contribution from the entry receptor, CXCR4. Attempts were made to identify the CD134 binding site, using the four deletion mutants described above. In contrast to results with CXCR4hi 3201 cells, the CD134hi 104-C1 cells failed to bind any of the deletion mutants (not shown). In addition to binding studies, vectors expressing wt SU and the four deletion mutants were cotransfected with a β-Gal-expressing pCFIV vector in 293T cells in order to generate pseudotyped virus particles expressing each envelope protein. After standardizing the virus supernatants for RT activity, the pseudovirions were used in single-round infections of Gfox cells (CD134+ CXCR4+). Only wt SU facilitated virus entry, consistent with failure of the mutants to bind to CD134 (Fig. 2b). Given the diverse group of deletion mutants, the results indicate that the binding of CD134 is heavily dependent on the overall conformation of SU rather than on a short contiguous epitope as with CXCR4.
Structural mapping of a panel of MAbs to SU. To further characterize the FIV-CXCR4 interaction, we employed the SU deletion proteins and synthetic peptides encompassing the whole or parts of the V3 loop to map the binding locations of SU-specific MAbs generated by immunizing mice with SU-Fc (14). By performing ELISAs using the MAb panel versus full-length or deletion proteins, we were able to assign four MAbs to SU-L2, seven to SU-V3, and one to SU-V4 (Table 1). No reactivity was noted to V5, suggesting that this region may either be nonimmunogenic in mice or reside in an immunologically privileged environment.
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TABLE 1. Mapping of binding locations of SU-specific MAbs by ELISA, using full-length or deletion mutant SU proteins
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3 but had a specificity outside E60 (Table 1 and data not shown). Of these MAbs, SU1-5 and SU1-7 exhibited less influence on SU binding than the MAbs specific for the E60 region (Fig. 3).
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FIG. 3. (a) Inhibition of SU-Fc binding to 3201 cells by SU MAbs. SU-Fc was preincubated with the indicated anti-SU Abs for 30 min before being added to cells and incubated for 1 hour at room temperature. SU-Fc binding was analyzed by FACS with anti-Fc antibody and is expressed as percent inhibition of SU binding. Results are representative of three independent determinations. (b) Summary of SU MAb specificity versus blockage of SU binding to CXCR4 on 3201 cells. Inhibition scale: black, strong; dark gray, moderate; light gray, weak; white, none or upregulation of binding.
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FIG. 4. Peptides corresponding to the V3 loop interfere with binding of SU to CXCR4. (a) Preincubation of 3201 cells with a peptide corresponding to V3 before addition of SU-Fc efficiently reduces binding of SU to CXCR4. The solid grey area corresponds to cells incubated with Fc protein, the grey line corresponds to cells incubated with SU-Fc, and the black line corresponds to cells preincubated with V3 peptide before the addition of SU-Fc. (b) Analysis of inhibition of SU-CXCR4 binding by a panel of short peptides overlapping the central region of V3. (c) The V3 peptide can inhibit FIV infection. PBMCs were pretreated with the indicated peptides before addition of FIV-PPR. RT activity was measured 7 days after infection. A peptide corresponding to a region of the feline leukemia virus (FELV) transmembrane region was used as a negative control. Results are representative of three independent determinations.
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FIG. 6. (a) Sequences of a panel of V3 peptides and summary of the ability of the peptides to interfere with SU binding to CXCR4. (b) Consensus sequence and amino acid percent frequency of the "N44 domain." (c) JPRED prediction of the secondary structure of V3. E, beta strand; -, indicates coil. Amino acids corresponding to the "N44 domain" are underlined.
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The importance of the V3 region of SU for receptor binding is not type specific but is limited to CXCR4. We assessed the blocking activities of the V3 and N44 peptides by analyzing their effects on Fc-tagged SU proteins from genetically divergent FIV subtypes. SU proteins derived from FIV 34TF10 Petaluma (an FIV subgroup A clone) (16, 45) and FIV C36 (19) both bound CXCR4 on 3201 cells (Fig. 5a). The binding of SU-34TF10-Fc or SU-C36-Fc was potently blocked by N44 and V3 peptides in a manner similar to that with FIV-PPR SU (Fig. 5a), indicating that the involvement of the N44 domain for CXCR4 interaction is a general feature among different strains of FIV.
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FIG. 5. (a) Binding of SU from FIV strains 34TF10 Petaluma and C36 to CXCR4 is blocked by preincubation with N44 and V3 peptides. (b) Analysis of the effects of peptides on SU binding to PBMCs and 104-C1 cells. A peptide corresponding to a region of the feline leukemia virus (FELV) transmembrane region was used as a negative control. Results are representative of three independent determinations.
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No three-dimensional analyses have been performed with FIV SU. However, JPRED analysis (8) of FIV SU indicates that FIV V3 has a similar secondary structure to that of HIV V3 (Fig. 6c) (23). Notably, the SSWKQRNRW amino acids of N44 are located at the predicted tip of V3, between two beta sheets (Fig. 6c). A similar motif has been identified in HIV V3 in the crystal structure of HIV-1 SU (23).
To further define residues critical for CXCR4 binding, site-directed mutagenesis was performed on the N-terminal portion of the N44 peptide region, with particular emphasis on the relatively conserved Ser392-Ser393-Trp394 sequence highlighted as important from the above studies. These three residues were mutated, individually or as a group, to alanine in the context of SU, and pseudovirions were then prepared as described above in order to test the effects of these mutations on virus entry. As shown in Fig. 7, Ser392 tolerated the change, but the Ser393Ala or Trp394Ala substitution or substitution of all three residues abrogated the ability of the mutant SU to facilitate virus entry into Gfox cells.
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FIG. 7. Site-directed mutagenesis of highly conserved amino acids at the predicted tip of the V3 loop of FIV SU. Residue Ser392, Ser393, or Trp394 or all three amino acids were replaced with alanine, and β-Gal-expressing pseudovirions were prepared to display each mutant SU, as described in Materials and Methods. Supernatants from transfected 293T cells containing each pseudovirion were assessed for RT activity, normalized, and then used to infect Gfox cells as detailed in the legend to Fig. 2. An alanine at Ser392 was tolerated, but substitution of alanine for either Ser393 or Trp394 abrogated the ability of SU to facilitate CXCR4 binding and virus entry.
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Although the consensus sequences between the conserved cysteine residues of the FIV and T-cell-tropic HIV-1 V3 domains display a low degree of homology, V3 domains from both viruses are positively charged (13, 21). Furthermore, a JPRED analysis predicted the secondary structure of FIV V3 to display a high degree of similarity to that of the HIV V3 loop. Both V3 regions are conserved in length (HIV V3 is 35 residues long, and FIV V3 is 41 residues long), and they exhibit a relatively conserved centrally located tip flanked by two beta-sheets (23, 26) (Fig. 6b and c). The consensus sequence of the HIV V3 tip is comprised of the amino acid sequence GPGR or GPGQ. Similarly, the amino acids in the "N44 region" at the tip of FIV V3 are also fairly conserved, with six of the amino acids having a frequency of 90% or higher in over 200 FIV isolates (Fig. 6b and data not shown). The V3 loop of HIV gp120 is the major determinant for coreceptor usage and hence cell tropism (4, 6, 22, 24, 25, 32, 43). In particular, the amino acid sequence at the tip/crown of HIV V3 is important for coreceptor usage (6, 32). In this region, basic residues and conserved hydrophobic residues have been shown to contribute to CXCR4 binding (4). Interestingly, the amino acid sequence in the FIV V3 region corresponding to N44 is also rich in hydrophobic and basic residues, including two tryptophans (98 and 100% conserved) and two arginines that are 73% and 99% conserved.
The "N44 domain" in FIV V3 is located outside the lysine and glutamic acid residues at positions 407 and 409 that have been implicated in the affinity of SU for heparan sulfate proteoglycans and in CrFK cell tropism for tissue culture-adapted FIV (16, 41, 46). Furthermore, the amino acids of the "N44 domain" correspond to the central section of peptides that have been reported to both absorb neutralizing activity in pooled cat sera and induce neutralizing Abs in cats (29, 38). Together with our data, these findings suggest that FIV neutralizing Abs recognize the CXCR4 binding part of SU or epitopes in close proximity to this domain.
As noted previously (12), and in contrast to SU binding to CXCR4hi 3201 cells, the majority of SU binding to either PBMCs or 104-C1 T cells occurs via CD134. Barely detectable contributions from direct binding to CXCR4 are evident by FACS analysis, as shown by the relative insensitivity of binding to the latter cells in the presence of the CXCR4 antagonist AMD3100 (Fig. 5). The present studies show that the V3 peptides did not block SU binding to either PBMCs or 104-C1 cells, which indicates that binding of SU to CD134 either occurs via regions other than V3 or is more conformation dependent, such that short peptides fail to block the CD134-SU interaction. In keeping with this observation, studies using HIV SU deletion mutants have demonstrated that V3 is not directly involved in CD4-SU interactions (51). Furthermore, none of the diverse deletion mutants employed here were able to facilitate virus entry when expressed on pseudovirions, consistent with the interpretation that there is a conformation-dependent binding of CD134 to noncontiguous regions of SU.
CXCR4-independent binding of the virus to CD134 on total PBMCs and 104-C1 cells may explain the low success of the V3 peptides in competing for virus infection ex vivo. FIV will bind to these cells via CD134 in the presence of peptides capable of blocking CXCR4 binding. Therefore, when peptide exchange/uptake occurs and/or when new CXCR4 entry receptors are generated, the virus is able to bind CXCR4 and enter the cell. However, it has been reported previously for HIV V3 peptides that circularized peptides can compete successfully for virus entry, whereas linear forms cannot (39). Consistent with this observation, the FIV full-length V3 peptide that demonstrated inhibitory effects on virus replication ex vivo had N- and C-terminal cysteine residues and thus could cyclize, whereas the shorter N44 peptide which failed to inhibit virus replication did not.
FIV and primate lentiviruses share the same model of cell entry, with a sequential interaction of SU with a binding receptor followed by binding and entry via a chemokine entry receptor. These binding steps are critical for viral entry and therefore offer potential targets for therapeutic or prophylactic intervention. The studies reported here have defined the residues critical for CXCR4 binding, which will aid in the use of the FIV-cat system as a small-animal model for development of inhibitors relevant to the treatment of HIV/AIDS.
This work was supported by grants AI025825 (J.H.E.) and AI069984 (A.D.P.) from the National Institutes of Health (NIH). Peptide synthesis was supported by grants AI0426969 and AI065402 (K.J.S.). The peptide facility at M. D. Anderson Cancer Center was supported with funds from NIH grant CA 16672. Magnus Sundstrom was supported by a fellowship from the Sweden-America Foundation.
Published ahead of print on 2 July 2008. ![]()
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