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Journal of Virology, June 2008, p. 6009-6016, Vol. 82, No. 12
0022-538X/08/$08.00+0 doi:10.1128/JVI.00280-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Christina Maresch,1,
Harald Granzow,2
Barbara G. Klupp,1
Jens P. Teifke,2 and
Thomas C. Mettenleiter1*
Institutes of Molecular Biology,1 Infectology, Friedrich-Loeffler-Institut, 17493 Greifswald-Insel Riems, Germany2
Received 7 February 2008/ Accepted 2 April 2008
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Previous studies revealed two conserved domains within the N termini of pUL36 homologs. One is required for interaction with pUL37, another conserved tegument protein (4, 22, 33, 44, 50), whereas the second specifies a ubiquitin-specific cysteine protease activity (20, 24, 27, 47, 48, 51). This activity is not required for herpesvirus replication, as has been shown for human cytomegalovirus (HCMV) (51) and Marek's disease virus (MDV) (24). Nevertheless, abrogation of deubiquitinating activity resulted in impairment of replication in vitro (51) and in vivo (24).
In pseudorabies virus (PrV), pUL36 is the only truly essential tegument protein (14), and its deletion completely blocks viral replication. Interestingly, recent data demonstrated that about one-third of PrV pUL36 located in the C-terminal half can be deleted without drastic impairment of viral replication. In contrast, the extreme C terminus of pUL36 is essential (6, 35), probably due to its association with the capsid-associated pUL25 (10). Moreover, deletion of an N-terminal domain of about 200 amino acids comprising the deubiquitinating module (7, 35) resulted in impairment, but not abrogation, of viral replication, indicating that the deubiquitinating activity is not essential for PrV replication. However, a more-detailed mutagenesis of specific amino acids involved in deubiquitination has not yet been performed.
The herpesvirus replication cycle is a well-organized procedure and relies on numerous enzyme activities as well as protein-protein interactions (reviewed in reference 43). In the last decade it has become clear that various cellular pathways, e.g., cell cycle control, signal transduction, protein trafficking, or immune response, are modulated by covalent attachment of ubiquitin or ubiquitin-like polypeptides, leading to proteasomal degradation, activation/inactivation of intrinsic enzyme activity, or translocation to specific cellular compartments depending on the nature of the modification (17, 23, 28). Furthermore, deubiquitinating enzymes have been identified by chemical or bioinformatical tools in nearly all kingdoms of life (39, 45, 46), corroborating a key role for the ubiquitin modification machinery. In consequence, many intracellular pathogens hijack the ubiquitin pathways, and several interactions of viral and bacterial proteins with the host cell ubiquitin machinery have been elucidated (reviewed in references 16, 36, and 38). For example, the HSV-1 immediate-early protein ICP0 has been shown to interact with the cellular ubiquitin-specific protease USP7/HAUSP, linking herpesvirus replication to the p53 pathway (12). It also contains two different regions possessing E3-ubiquitin ligase activity that mediate binding to cellular proteins (8, 49). Furthermore, in addition to the conserved cysteine protease module located in the N terminus of pUL36 (27, 39, 47) several other viral proteins with deubiquitinase activity have been identified: the adenovirus proteinase adenain (1) and the papain-like protease of severe acute respiratory syndrome-associated coronavirus, PLpro (37), indicating a widespread mechanism of linking viral replication to the host cell machinery.
The catalytic residues of the cysteine protease are highly conserved throughout all herpesvirus subfamilies (48), and deubiquitinating activity of pUL36 has been shown in vitro for HSV-1 (27), HCMV (51) and murine cytomegalovirus (47), Epstein-Barr virus (47), and MDV (24). Despite this conservation, the biological relevance of pUL36-dependent deubiquitination for herpesvirus biology remains unclear. An HCMV mutant carrying a single-amino-acid exchange in the active-site cysteine residue mutated to isoleucine showed slower production of infectious virus but no obvious differences in ultrastructural analysis compared to wild-type virus (51). Replication in vitro of MDV carrying a cysteine-alanine exchange was also only slightly reduced, and lytic replication in the natural host, chicken, was not affected. Interestingly, MDV oncogenicity was reduced significantly (24).
To analyze the role of pUL36-dependent deubiquitination in PrV infection in detail, we mutated the active-site cysteine at amino acid position 26 to serine with the aim of abolishing deubiquitinating activity but not interfering with the overall structure of the protein. The resulting mutant virus as well as a rescuant was tested for replication in cell culture and neuronal spread in our standard animal model.
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UL36F, which lacks almost the complete UL36 coding region, was propagated on RK13-UL36 cells (14). Plasmid constructs and isolation of virus recombinants. For site-directed mutagenesis of the active-site cysteine (C26), plasmid pUC-UL36, containing a 10.5-kb genomic NruI fragment comprising the complete ORF of UL36 (14) (Fig. 1C), was used for PCR. With primers sb_UL36CFOR (5'-CACACCCGGGTCGGGCGTCTCGAGCC-3'; nucleotides [nt] 42237 to 42257 [GenBank accession no. BK001744]; the mutated nucleotide is shown in bold, and the XmaI site is shown in italics) and sb_UL36CREV (5'-CACACGACGGCGAGGACGGGGATGGC-3'; nt 41551 to 41570 [GenBank accession no. BK001744]), an approximately 700-bp fragment was amplified. After digestion with XmaI (nt 41571 and 42252), the resulting 681-bp fragment was cloned into XmaI-cleaved pUC19 (NEB) resulting in pUC-XmaI(C26S). Correct amplification and mutagenesis were verified by sequencing. This modified XmaI fragment was used to substitute for the original fragment in the cloned 1.2-kb KpnI/SphI fragment (Fig. 1C). After insertion of a 4-kb SphI/SphI fragment (nt 41448 to 37368), the 4.9-kb KpnI/BamHI(C26S) fragment (nt 42680 to 37737) was cloned into appropriately cleaved pcDNA3. The full-length UL36 ORF was reconstituted after insertion of a 5.5-kb BamHI fragment comprising the C-terminal half of UL36 to yield pcDNA-UL36(C26S) (Fig. 1C). Correct reconstitution of the UL36 ORF was confirmed by restriction enzyme analyses.
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FIG. 1. Schematic overview of PrV pUL36 and construction of PrV-UL36(C26S). (A) Diagram of the PrV genome divided into unique long (UL) and unique short (US) regions by internal (IR) and terminal (TR) repeats. Locations of BamHI restriction sites are also shown. (B) Confirmed and putative functional domains in PrV pUL36. Cys26, active-site cysteine for deubiquitinating activity in PrV; pUL37 binding site; CBD, capsid binding domain (10, 35); NLS, nuclear localization signals; late domain motifs (PPKY and PSAP). Light gray boxes indicate nonessential regions. (C) UL36 gene region with relevant restriction enzyme cleavage sites and corresponding nucleotide numbers (GenBank accession no. BK001744) and adjacent restriction sites provided by the cloning vectors pUC19 and pcDNA3. Single-nucleotide mutation resulted in cysteine-serine exchange. Locations of the UL36 start and stop codons are indicated by asterisks.
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UL36F DNA (14) into RK13 cells. Viral DNA of several progeny plaque isolates was tested for correct UL36 insertion (data not shown). To confirm that the point mutation was present, the relevant part of UL36 was amplified by PCR using primers UL362FOR and UL36rev (7) and sequenced. Since the viral DNA of all plaque isolates showed the same correct sequence, one isolate was chosen, named PrV-UL36(C26S), and further characterized in this study. To verify that the defects in replication of PrV-UL36(C26S) were caused by the single-amino-acid exchange, DNA of PrV-UL36(C26S) was cotransfected with plasmid pUC-KpnI/SphI containing the corresponding wild-type UL36 sequence. DNA of progeny plaques was analyzed by sequencing of the PCR products as described above. One plaque isolate which specified the wild-type sequence was chosen randomly, named PrV-UL36(C26S)R, and included in the experiments.
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blotting. To verify incorporation of pUL36(C26S) into virus particles, virions of PrV-UL36(C26S) as well as of PrV-Ka and PrV-UL36(C26S)R were purified as described previously (7). After separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and electrotransfer, membranes were incubated with a monospecific rabbit antiserum directed against a glutathione S-transferase-pUL36 fusion protein containing amino acids 1371 to 2158 (dilution, 1:100,000), and bound antibody was detected as described previously (7). Parallel blots were probed with monospecific antisera against pUL37 (1:100,000) (32) and the major capsid protein, pUL19 (1:300,000) (31).
In vitro growth studies. For determination and analysis of one-step growth kinetics and plaque size, RK13 cells were infected with PrV-Ka, PrV-UL36(C26S), and PrV-UL36(C26S)R and processed as described previously (7). Supernatants and cell lysates were combined and titrated.
Electron microscopy. For analysis of ultrathin sections, RK13 cells were infected with PrV-Ka, PrV-UL36(C26S), and PrV-UL36(C26S)R at a multiplicity of infection of 1 and incubated for 14 h at 37°C. Fixation and embedding were done as described previously (18). Ultrathin sections were counterstained with uranyl acetate and lead salts and examined with a Tecnai 12 electron microscope (Philips, Eindhoven, The Netherlands).
In vivo studies. To investigate the influence of the point mutation on neuroinvasion of PrV, a previously described mouse infection model was used (30). Mean survival times and transneuronal spread were analyzed after intranasal infection of 10 6- to 8-week-old CD-1 mice with 104 PFU of PrV-UL36(C26S) and PrV-Ka in 10 µl (5 µl per nostril), respectively. Four animals were inoculated with PrV-UL36(C26S)R. Animals were observed three times a day for clinical signs, and one mouse of each group was euthanized and necropsied every 24 h after inoculation to follow the kinetics of viral spread by histopathology and immunohistochemistry as described previously (21, 30).
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A), to abolish thioether linkage to lysine residues of bound ubiquitin due to lack of sulfur in serine but to maintain an amino acid structure highly similar to that of cysteine in order not to alter the overall structure of the protein. In addition we restored the wild-type amino acid sequence after cotransfection of PrV-UL36(C26S) with the pUC-KpnI/SphI fragment to test for effects of possible second-site mutations. Correct mutagenesis and reversion of the mutation were verified by sequencing and restriction enzyme analyses of the constructed plasmids as well as of the generated virus recombinants PrV-UL36(C26S) and PrV-UL36(C26S)R (data not shown). Protein expression and incorporation of the mutated pUL36 were demonstrated by indirect immunofluorescence (data not shown) and Western blot analysis of purified virions showing that pUL36(C26S) is incorporated and correctly expressed in the full-length form (Fig. 2A). Since mutagenesis resulted only in the exchange of one amino acid, no differences in molecular masses between pUL36 and pUL36(C26S) were detected (Fig. 2A). The minor bands prominent in PrV-Ka and PrV-UL36(C26S)R, which varied between preparations, may be degradation products of pUL36 which, depending on the preparation, were sometimes also observed in PrV-UL36(C26S). Parallel blots probed with antisera against the major capsid protein pUL19 (Fig. 2B), as well as the inner tegument protein and interaction partner of pUL36, pUL37 (Fig. 2C), showed no drastic differences between the different viruses.
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FIG. 2. Western blot analysis of purified virions. Purified virions of PrV-Ka (lanes 2), PrV-UL36(C26S) (lanes 3), and PrV-UL36(C26S)R (lanes 4) as well as noninfected RK13 cells (lanes 1) were separated on a 6% polyacrylamide gel and probed with antisera against pUL36 (A), pUL19 (B), and pUL37 (C). Locations of molecular mass marker proteins (high-molecular-weight markers; Invitrogen) are indicated on the left (A and B) or right (C), respectively.
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FIG. 3. Replication properties. (A) One-step growth kinetics. Replication of PrV-Ka, PrV-UL36(C26S), and PrV-UL36(C26S)R was assessed after infection of RK13 cells. Average titers and standard deviations of three independent experiments are shown. (B) Determination of plaque sizes. Plaques of PrV-Ka, PrV-UL36(C26S), and PrV-UL36(C26S)R on RK13 cells were measured, and mean plaque diameters of 30 plaques, determined in at least three independent experiments, were calculated as percentages of plaque size by PrV-Ka. Standard deviations are indicated.
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FIG. 4. Ultrastructural analysis of PrV-UL36(C26S)- and PrV-UL36(C26S)R-infected cells. RK13 cells were infected at a multiplicity of infection of 1 and analyzed 14 h after infection. (A) Overview of a PrV-UL36(C26S)-infected cell and higher magnification of cytoplasmic accumulations (inset). (B) Overview of a PrV-UL36(C26S)R-infected cell and higher magnification of intracytoplasmic capsids and secondary envelopment (inset). Bars, 2.4 µm (A and B) and 250 nm (A and B, insets).
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TABLE 1. Kinetics of neuroinvasion in the murine trigeminal pathway
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FIG. 5. Immunohistochemistry. Detection of pUL19 (PrV major capsid protein) in the nasal mucosa and in the trigeminal ganglion of mice infected with PrV-UL36(C26S), PrV-UL36(C26S)R, and PrV-Ka. , all animals dead.
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To date, only a few studies of viruses carrying specific alterations in the cysteine protease module of the herpesvirus large tegument protein pUL36 have been published (24, 51). Although we have not tested for the deubiquitinating activity in PrV pUL36 in a biochemical assay, the high degree of conservation of the catalytic triad module as well as demonstration of protease activity and its distortion by single point mutations in pUL36 homologs of all three herpesvirus subfamilies implies functional conservation of the deubiquitination activity (20, 24, 27, 47, 48, 51).
A mutant of HCMV carrying an isoleucine residue instead of the catalytic cysteine (C24I) in the pUL36 homolog has been shown to be replication competent but developed cytopathic effects more slowly in human foreskin fibroblasts than did the wild type (51). Unlike our data showing large cytoplasmic accumulations of unenveloped nucleocapsids in PrV-UL36(C26S)-infected cells, the HCMV mutant displayed no obvious defects in ultrastructural analyses. Thus, our mutant is the only one described so far in which mutation of the conserved deubiquitination motif has a clear effect on virion morphogenesis.
Mutations in several proteins have been shown to result in accumulation of viral capsids in the cytosol. These include pUL37 (32), pUL47 (34), and pUL48 (15). pUL37 forms a complex with pUL36 (33), and it may be hypothesized that the pUL36 mutation impairs complex formation with pUL37. However, our data do not support this, since pUL37 appears present in purified virions in amounts similar to those found in wild-type or rescued virus. Moreover, the accumulation of capsids in the cytosol observed in PrV-UL36(C26S)-infected cells did not show the hexagonal symmetry observed in the absence of pUL37 (32). Thus, the defect in morphogenesis should not be due to indirect impairment of pUL37 binding.
In MDV replacement of the active-site cysteine by alanine (C98A) only slightly diminished viral replication in cell culture and affected plaque formation in a cell-type-dependent manner (24). Furthermore, lytic replication in vC98A-infected chickens was similar to that of wild-type virus infection but the formation of T-cell lymphomas was drastically impaired, indicating an important role for the deubiquitinating activity in in vivo T-cell transformation.
In our mouse infection model (30) we investigated the influence of the C26S mutation on PrV neuroinvasion and transneuronal spread. Mice infected with PrV-UL36(C26S) showed a mean survival time two times longer than that of mice infected with wild-type or rescued virus. However, typical clinical symptoms like pruritus and hyperesthesia occurred 24 h before death, demonstrating that this mutant is still neuropathogenic. Kinetic analysis showed that the delay in death was associated with a delay in neuroinvasion. Infection of neurons of the trigeminal circuit was first observed 72 h after infection, which is ca. 48 h later than in mice infected with wild-type or rescued virus. By 111 h p.i. the infection of the trigeminal ganglion, as judged from the number of immunostained neurons, was comparable to that in mice infected with wild-type or rescued virus at 48 h p.i. Interestingly, due to the longer survival times of the infected mice, PrV-UL36(C26S) was able to reach cortical neurons (third neuronal level), which were not infected by wild-type or rescued virus.
This impairment in neuroinvasion parallels the replication deficiency in cell culture, although it is not clear whether the latter is the sole reason for the delay in neuronal infection. However, the observed defect in morphogenesis can also explain the reduction in egressing axonal capsids at late times after infection with a PrV mutant lacking the whole deubiquitinating module (35).
Interestingly, in previous studies using a PrV mutant lacking the complete deubiquitinating module (PrV-UL36
22-248 [7]) we observed a reduction in viral titers which was similar to that of PrV-UL36(C26S), which parallels data from work by others (35). However, plaque sizes of PrV-UL36
22-248 were reduced only to 82% of original size and mean time to death in mice increased to ca. 73 h. In contrast, PrV-UL36(C26S) exhibited plaque sizes which were reduced to 62% of the original size and mean time to death increased to ca. 111 h. In line with these observations, ultrastructural analyses did not show a specific defect in PrV-UL36
22-248-infected cells compared to wild-type virus, whereas accumulations of cytoplasmic capsids were observed in cells infected by PrV-UL36(C26S). These differences could not be attributed to a differential effect of the mutation on pUL37 incorporation (Fig. 2). Thus, the more-specific mutation resulted in a stronger phenotype than did the ca.-200-amino-acid deletions encompassing the whole deubiquitinating module (7, 35).
The more drastic phenotype of PrV-UL36(C26S) could have been induced by fortuitous secondary mutations. However, rescue of the defect in PrV-UL36(C26S)R by the wild-type KpnI/SphI fragment demonstrated that mutations outside this fragment played no role. Moreover, we sequenced the whole 1.2-kbp KpnI/SphI fragment in PrV-UL36(C26S) and found only the engineered mutation. Thus, the observed phenotype is clearly due to the C26S exchange. One possible explanation is that the specific exchange of the catalytic cysteine blocks enzymatic activity but, presumably, not substrate binding, resulting in a blocked state in which substrate is bound to the catalytic center. This could either sterically hinder other important interactions of pUL36 (although interaction with pUL37 still occurs) or distort pUL36 structure to a larger extent than deletion of the whole module could.
Ubiquitination has been shown to be involved in targeting of proteins toward the ESCRT machinery, which is required for maturation of infectious virions in retro-, rhabdo-, and filoviruses (reviewed in reference 5). Recently published studies showed that dominant-negative variants of ESCRT proteins may also impair maturation of HSV-1 (9, 11). In contrast, depletion of ESCRT proteins increased HCMV assembly (13). The modules which interact with ESCRT proteins have been termed "late domains" since mutation of these conserved sequence motifs resulted in a block of retrovirus infection late in the replication cycle (reviewed in reference 5).
Based on sequence analysis, several putative late domain motifs have been found within the PrV pUL36 protein. Deletion of the PSAP motif in the carboxy-terminal half of PrV pUL36 affected virus replication in vitro only marginally, whereas mean time to death of infected mice was significantly increased (7). However, so far it is unclear whether PrV uses the ESCRT machinery for its replication.
Since pUL36 remains bound to the incoming capsid during its transit through the cytosol to the nuclear pore (18, 19, 40), it represents a prime candidate for a viral protein interacting with either the cellular motor system or the nuclear pore or both. Indeed, a temperature-sensitive mutant of HSV-1 pUL36 exhibits a defect in early stages of infection (2, 3). Recently, cleavage of pUL36 has been suggested to be required for the release of the viral genome into the nucleus (25). Furthermore, Wang et al. suggested a role for pUL36 deubiquitinating activity in directing capsids after cell entry to the nuclear pore complex (51), and several reports linked ubiquitin-related SUMO proteases to the nuclear pore complex (reviewed in reference 41). However, we did not observe a defect in early stages of infection of cells with PrV-UL36(C26S), indicating that deubiquitinating activity is not required for transport of incoming capsids, docking at the nuclear pore, and genome release.
Taken together, we report here that a PrV mutant carrying a specific alteration of the active-site cysteine residue within the deubiquitinating module in the essential PrV tegument protein pUL36 exhibits a defect in virion morphogenesis accompanied by an impairment of neuroinvasion in a mouse infection model. Further studies need to address the identity of cellular or viral substrates of the cysteine protease in pUL36 to further elucidate its biological role in herpesvirus replication.
We thank D. Werner and P. Meyer for expert technical assistance and M. Jörn for photographic help.
Published ahead of print on 9 April 2008. ![]()
Contributed equally to this work. ![]()
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