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Journal of Virology, May 2007, p. 4828-4836, Vol. 81, No. 9
0022-538X/07/$08.00+0 doi:10.1128/JVI.02188-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Pathology, The Hebrew UniversityHadassah Medical School, Jerusalem, Israel
Received 5 October 2006/ Accepted 8 February 2007
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CyHV-3 DNA was identified in infected fish maintained for 64 days postinfection (dpi) at the nonpermissive temperature range, but infectious virus was not found in these fish (4, 5). Recently, it was reported that infected fish maintained for
200 days at 12°C released infectious virus upon shift of the water temperature to a permissive temperature, i.e., 22°C (28). These reports strongly suggest that CyHV-3 persists in fish maintained at low temperatures for an extended period. In contrast, neither viral DNA nor infectious virus was found in "naturally immunized fish" (25). These fish were exposed to CyHV-3 at the permissive temperature for 2 to 3 days and then transferred to the nonpermissive temperature of 30°C for at least 3 days before being transferred to open-air ponds. These fish have been kept in open-air ponds in Israel for over 12 months and, to date, show no signs of viral infection.
In order to determine whether CyHV-3 persists in host cells maintained at a high nonpermissive temperature, we developed a tissue culture model to "follow" CyHV-3 at permissive (22°C) and nonpermissive (30°C) temperatures. We determined the length of time that CyHV-3 persists in cultured cells, as well as the sequence of events leading to suppression and reappearance of viral replication and transcription in infected cells following alteration of the temperature from permissive to nonpermissive and back. Here we demonstrate that morphologically deformed cells induced by infection of cultured common carp brain (CCB) cells at the permissive temperature (22°C) turned normal following transfer of the cell cultures to 30°C. Early transcription of viral genes is intensively inhibited at the nonpermissive temperature, and no replication of viral DNA is apparent. After establishing an infection, we tracked the down regulation of viral transcription following transfer of the cells to 30°C and the reappearance of viral mRNA after a shift to the permissive temperature. Our results show that elimination of viral mRNAs proceeds in a specific hierarchy not correlated with the reappearance of the mRNA molecules following infection. Furthermore, the establishment of the mRNA population following a temperature downshift is distinguished from that which occurred after infection of naïve cells.
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Viruses. CyHV-3 isolated from the kidneys of sick fish was propagated in koi fin cell cultures, as previously described (21, 25). At 4 to 7 dpi, following the appearance of plaques, the culture medium was collected and cleared of cells and cell debris by centrifugation for 10 min at 10,000 x g. The viral titer was determined by a plaque assay carried out with CCB cell cultures. The virus suspension was divided into aliquots and stored at 70°C for future use. Cells were routinely propagated and infected in 50-ml flasks (Nunc) at 22°C, and the temperature shift was carried out by transferring the flasks into a 30°C incubator.
Nucleic acid extraction from cultured cells. The extraction procedure for total DNA varied according to our requirements. For PCR analyses, cultured cells were pelleted and washed twice in phosphate-buffered saline. Pellets were then resuspended in Tris-EDTA (pH 7.6) supplemented with 0.5% sodium dodecyl sulfate and incubated for 10 min at 37°C, and subsequently, DNA was purified by phenol-chloroform and ethanol precipitation. For pulsed-field gel electrophoresis (PFGE), cells were embedded in agarose plugs by using standard methods (27). In brief, washed cell pellets were resuspended in buffer L (0.01 M Tris-Cl, pH 7.6, 0.1 M EDTA, 0.02 M NaCl) at a concentration of 1 x 107 cells/ml, and an equal amount of molten 1% low-melting-temperature SeaPlaque agarose (BMA) was added to the cell mixture and allowed to set in a 1-ml syringe barrel. Plugs were then transferred to 5 volumes of buffer L supplemented with 0.1 mg/ml proteinase K (Sigma-Aldrich) and 1% (wt/vol) Sarkosyl (Sigma-Aldrich) and incubated for 16 h at 50°C. Following incubation, plugs were repeatedly washed in Tris-EDTA containing 40 µg/ml phenylmethylsulfonyl fluoride (Sigma-Aldrich) and then stored at 4°C. Total cellular RNA was extracted from CCB cells by using an EZ-RNA kit (Biological Industries, Kibbutz Beit Haemek, Israel) according to the manufacturer's instructions.
Quantitative PCR (qPCR) analysis. Primers NHRT-F (5'-CCAGATCCACCAGCTGCTGT-3') and NHRT-R (5'-AAGATGGGATCTCTCGGAGG-3') were designed to amplify a 200-bp amplicon of the CyHV-3 B22R homologue (GenBank accession no. AY661550) by PrimerExpress (Applied Biosystems), using default settings. Reaction mixtures containing 250 nM of each primer, 12.5 µl of 2x SYBR green master mix (Applied Biosystems), and 2.5 µl of sample in a final volume of 25 µl were run on an ABI PRISM 7700 instrument (Applied Biosystems). CyHV-3 DNA from sucrose gradient-purified virions (10) was used to generate a standard linear curve at a range of 5 ng to 0.25 fg (R = 0.99). DNA samples were assayed in quadruplicate.
RT-PCR. For the reverse transcriptase (RT) reaction, total RNA preparations extracted from infected and noninfected cells were treated with DNA-free (Ambion) according to the manufacturer's protocol. cDNAs were generated from 1 µg of total RNA by using SuperScript RNase H RT according to the manufacturer's protocol (Invitrogen), using a final volume of 20 µl. Following reverse transcription, 2 µl of the cDNA was amplified using HotStart Taq DNA polymerase (Roche) with a specific primer set for each gene (Table 1). The amplification protocol included 1 cycle of initial activation at 95°C for 10 min; 30 cycles of denaturation at 94°C for 1 min, annealing at 55°C for 1 min, and extension at 72°C for 2 min; and 1 cycle of terminal extension at 72°C for 10 min. Ten microliters of the PCR product was run in a 1% agarose gel and stained with ethidium bromide. The primers listed in Table 1 represent the 20 viral open reading frames (ORFs) published thus far in GenBank and comprise approximately 14% of the viral transcriptome. Amplification of carp ß-actin with primers 5'-GCCAACACAGTGCTGTCTGG-3' (forward) and 5'-GCTGATCCACATCTGCTGG-3' (reverse) was used as a control.
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TABLE 1. Oligonucleotides used as primers to identified CyHV-3 mRNAs
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FIG. 1. Residual viral infectivity following incubation at permissive and nonpermissive temperatures. Medium containing virus was thawed on ice, dispensed into aliquots, and (A) incubated at temperatures ranging from 0 to 50°C for 30 min or (B) incubated at 22°C and 30°C for the designated times. Following incubation, residual infectivity was measured by plaque assay on CCB cells. Results shown are mean values for three independent assays.
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FIG. 2. Temperature shift assay. CCB cells were infected with wt CyHV-3. Following infection, the cells were either kept at 22°C (B) or shifted up to 30°C. At 24 hpi (C) or 48 hpi (D), the cells were returned to 22°C. At 9 dpi, the cells were fixed, stained, and photographed. (A) Noninfected control. (E) Infected cells kept at 30°C after infection. Magnification, x20.
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FIG. 3. Deactivation and reactivation of CyHV-3 by temperature shifts. CCB cells grown at 22°C were infected with wt CyHV-3. At 3 dpi, plaques began forming (A), and the cells were transferred to 30°C. Three days after the upshift, cells returned to their normal morphological state (B) and were shifted down to 22°C. Seven days after the downshift, the onset of CPE was evident (C). Thirteen days after the downshift, cells detached from the flask and the culture died (D). Arrowheads point to the reference marker on the flask. Magnification, x20.
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FIG. 4. Replication of viral DNA at permissive and nonpermissive temperatures, measured by qPCR. CCB cells were infected (MOI, 3) at 22°C for 1 h. Cells were washed and incubated at either 22°C or 30°C. (A) At 0, 2, 8, 16, 24, 48, and 96 hpi, total DNA was extracted from a cell culture maintained at each temperature, and viral DNA was measured by using qPCR. (B) At 96 hpi, cells grown at 22°C were transferred to 30°C (SU) and those at 30°C were shifted to 22°C (SD). Viral DNA was quantified at 0, 48, 72, 96, 120, and 144 h postshift. NI, total DNA assayed from noninfected CCB cells.
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We were interested to determine, firstly, how soon after the downshift of temperature the infected cells recommenced virus production, and secondly, whether the delay in virus production was dependent on the duration that the infected cells were maintained at the permissive temperature. To this end, we infected CCB cells with CyHV-3 at an MOI of 0.1 and transferred cultures at 1-day intervals to 30°C (Fig. 5). At 6 dpi, all cultures were transferred to 22°C, and the newly synthesized virus released into the medium was identified by PCR amplification. No viral particles were released into the medium on the third day after the shift (9 dpi) (Fig. 5A). However, at 13 dpi (a week following temperature downshift), cells which were moved to 30°C at 3 and 4 dpi released virus into the medium (Fig. 5B, lanes 3 and 4), while cells which remained at 22°C for only 24 and 48 hpi produced viruses as late as 19 dpi, after 2 weeks at the permissive temperature (Fig. 5C). These results indicate that a lag of at least 3 to 7 days at the permissive temperature is required for CyHV-3-infected CCB cells to release virus progenies into the culture medium.
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FIG. 5. Identification of viral progeny of temperature-deactivated/reactivated virus by PCR analysis. The scheme on the right describes the assay protocol. CCB cells were infected at 22°C and either kept at the permissive temperature (arrows 2, 3, and 4) or shifted up to 30°C (arrow 1). At time intervals of 24 h, flasks 2, 3, and 4 were shifted to 30°C. At 6 dpi, cells were downshifted to 22°C. At 9 (A), 13 (B), and 19 (C) dpi, medium was collected from each cell culture and assayed for the presence of viral DNA by PCR. Lane a, purified CyHV-3 DNA used as a template; lane b, medium collected from infected cells at 22°C at 3 dpi; lane c, medium collected from noninfected control cells. Arrows to the left of the gels represent a 700-bp DNA marker.
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FIG. 6. Southern blot analysis of CyHV-3 DNA at permissive versus nonpermissive temperatures. CCB cells were infected (MOI, 10) at 22°C and either kept at the permissive temperature or shifted to 30°C. DNA samples were separated by PFGE (100-µl plug/slot), and viral DNA was detected by Southern hybridization using a digoxigenin-labeled clone A probe. Lanes: V, purified viral DNA; 1, cells immediately postinfection; 2, cells at 8 hpi at 22°C; 3, cells at 12 hpi at 22°C; 4, cells at 24 hpi at 22°C; 5, cells at 8 hpi at 30°C; 6, cells at 12 hpi at 30°C; 7, cells at 24 hpi at 30°C; 8, cells at 48 hpi at 22°C; 9, cells at 48 hpi at 30°C; 10, cells infected for 24 h at 22°C and maintained at 30°C for 48 h; 11, cells at 72 hpi at 30°C; 12, cells infected for 24 h at 22°C and maintained at 30°C for 72 h.
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FIG. 7. Inactivation and reactivation of viral transcription following temperature shift. (A) Infected CCB cells (5 dpi) were shifted to 30°C, and total RNA was extracted daily for 17 days. (B) On day 20, cells were shifted back to 22°C, and RNAs were extracted for 10 days. RT-PCR using the primers listed in Table 1 was used to monitor viral transcription. Endogenous carp ß-actin was used as a positive control for the RT reaction (not shown). ND, not detected.
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Prolonged incubation of cells under nonpermissive conditions revealed that CyHV-3 persistence in cultured cells is limited. Infected cells kept at 30°C for 30 days were positive for viral DNA by PCR, and 14 days following transfer of these cells to 22°C, plaques began forming. Infected cells incubated for 70 days at 30°C were negative for the presence of viral DNA by PCR and showed no sign of viral reactivation after being shifted back to the permissive temperature (not shown).
Early inhibition of gene transcription following temperature upshift. We tested whether a temperature shift immediately following infection inhibits the transcription of viral genes, which may account for the inhibition of viral DNA replication (Fig. 4B). Cells were exposed to the virus at 22°C for an hour of absorption and then immediately shifted to 30°C. At short intervals of 2 h, total RNA was extracted and RT-PCR analysis was performed on CyHV-3 gene transcripts. Figure 8A shows that while Orf4 and B22Rh were both transcribed at 22°C, only the latter appeared at 30°C. Further analysis showed that at 24 hpi, all of the known viral transcripts appeared at the permissive temperature (not shown), yet only the clone Y, TK, intercapsomeric triplex protein (ITP), and B22Rh genes (Fig. 8A and B) were transcribed at 30°C.
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FIG. 8. Early gene transcription following temperature shift. CCB cells were infected (MOI, 3) at 22°C and either kept at 22°C or shifted to 30°C immediately p.i. (A) Transcription kinetics of B22Rh and Orf4 at 22°C versus 30°C. At the times indicated, RT-PCR analysis was performed using primers for the designated viral replicons. (B) RT-PCR at 24 hpi at 22°C versus 30°C, using primers for the genes designated in the header. M, 100-bp DNA ladder (PeqLab); PC, CyHV-3 DNA; ß-Act, endogenous carp ß-actin control; NC, no-RT template control using ß-actin primers.
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In order to resolve the question of whether CyHV-3 persists in host cells, we used the following two different approaches: cultured cells were used rather than live fish, and infected carp cells were maintained at a nonpermissive 30°C rather than at low temperatures. Studying persistence in cultured cells is advantageous, as the system is not affected by host immune responses, and because most of the cells bear the virus, it facilitates molecular studies. The results of this study clearly show that CyHV-3 persists in cultured cells kept at 30°C for at least 30 dpi, as transferring the cells to permissive conditions at 30 but not at 70 dpi reactivates the virus. Since the cells were continually passaged over the incubation period at the nonpermissive temperature, the virus's inability to reactivate at 70 dpi may be due to its dilution in the culture. Whether these results indicate that the virus persists in the fish body for such a long period at high temperatures is not yet known, and resolving this question will require additional intensive investigations.
Here we report that CyHV-3 is stable in culture medium and that virus incubated at 22°C or 30°C for 2 h remains active. This observation correlates with our previous results showing that the virus remains active for 4 h in a water tank (19). The foamy vacuolated cytoplasm and the morphology deformation induced by the virus (21) are completely dependent on viral gene expression, as holding back the viral mRNA and/or viral DNA synthesis by elevating the temperature is concomitant with converting the cell morphology to normal.
Early viral gene transcription, with the exception of that of the TK, B22Rh, ITP, and clone Y genes, was completely abolished when cells were transferred to 30°C immediately following infection (Fig. 8). Interestingly, the four genes transcribed at the nonpermissive temperature were the last genes to be shut off when cells were shifted to the nonpermissive temperature (Fig. 7A), suggesting that unlike the case for other viral genes, their transcription is not temperature dependent. Whether these genes share common regulatory motifs or play a role in persistence of CyHV-3 is a matter of further study.
Viral DNA synthesis is completely restrained at nonpermissive temperatures, and viral DNA replication resumes within 48 h following cell transfer to permissive temperatures (Fig. 4). However, maturation and release of infectious virus into the culture medium are time-consuming and occur 7 to 19 days after transfer of the cells to 22°C (Fig. 5), suggesting that DNA synthesis precedes the expression of many other viral genes required for virus maturation. The finding that 5 of 20 genes tested in our study reappeared as late as a week after moving the infected cells to the permissive temperature supports this assumption.
A correlation exists between the qPCR and Southern blot experiments showing that no viral replication occurs, implying that CyHV-3 is inhibited at early stages of infection when shifted to 30°C. When cells were infected at the permissive temperature, the viral DNA assumed a high-molecular-weight state, as observed in herpes simplex virus type 1 (HSV-1) (13, 22, 29), the prototype virus of the family Herpesviridae, prior to active lytic replication. Although the cells were infected at a high MOI, we were unable to detect the state of the viral DNA when they were shifted to 30°C immediately following infection. Once viral replication initiated at the permissive temperature, both the high-molecular-weight ("endless") and linear forms were maintained when cells were shifted to 30°C for up to 72 h. Whether the high-molecular-weight latency-associated form of the viral DNA persists for longer periods under nonpermissive conditions is a matter for further study.
While viral DNA replication is suppressed upon shifting to 30°C, viral mRNA transcripts are present in cells for up to 17 days under nonpermissive conditions. This may explain the "naturally immunized carp" phenomenon (25). In carps, low environmental temperature enhances nonspecific cytotoxic cell activity and decreases antibody production. In contrast, a high environmental temperature has no effect on these parameters compared to the standard temperature (15). Elevating the temperature gives the fish immune system an advantage over the virus. While the pathogenic virus does not replicate in these fish, it continues to produce viral antigens, triggering a specific immune response which is fully active under these conditions.
Moving the infected cells from the permissive temperature to 30°C immediately halted viral DNA synthesis, while the DNA polymerase gene mRNA was eliminated 4 days later. In case the cellular translation machinery is not affected by the temperature upshift, it is conceivable that the viral DNA polymerase is a temperature-sensitive enzyme. This mechanism limits the synthesis of viral DNA to the environmental conditions appropriate for virus propagation.
The question of whether CyHV-3 undergoes latent infection is economically and epidemiologically important. The experiments described here and those previously reported by St.-Hilaire et al. and Gilad et al. (4, 5, 28) showing that infectious virus and/or viral information persists in fish maintained at a low temperature support the assumption that CyHV-3 undergoes latent infection. These experiments inform us that CyHV-3 replication and disease induction are restrained under nonpermissive conditions. Converting the environmental conditions to permissive is sufficient to reactivate the virus.
Unique viral genes control latent infection of HSV-1, for example, which takes place under normal permissive conditions, and alteration of the physiological status of the host cells causes the reactivation of the virus (24). Several tissue culture models were developed to study the infection, repression, and reactivation of HSV-1. These systems usually employ viral replication inhibitors and/or mutant viruses (7, 14, 32, 33) or infecting wild-type (wt) virus outside its natural host (1). A recent publication by Bringhurst and Schaffer shows a correlation of stress induced by temperature with the ability of a mutant HSV-1 to propagate in a tissue culture model (2).
Whether the molecular mechanisms regulating CyHV-3 and other herpesviruses, such as HSV-1, are parallel remains to be determined. Our model, which studies a wt virus in its natural host, may facilitate this endeavor.
The conditional quiescence in which CyHV-3 persists in poikilothermic vertebrate host cells maintained under nonpermissive conditions enables it to survive under nonpermissive conditions and provides an evolutionary selective advantage. It is plausible that this genetic characteristic of the poikilothermic vertebrate viruses could be developed into genes responsible for latency in large DNA viruses of homoeothermic vertebrate organisms.
Published ahead of print on 14 February 2007. ![]()
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