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Journal of Virology, April 2007, p. 3685-3692, Vol. 81, No. 8
0022-538X/07/$08.00+0 doi:10.1128/JVI.01538-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Molecular Biology and Biochemistry and Cancer Research Institute, University of California, Irvine, California 92697-3905
Received 18 July 2006/ Accepted 23 January 2007
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Despite its conservation in all gammaretroviruses, the function of glyco-Gag has been unclear. M-MuLV mutants defective in expression of gPr80gag are replication competent in vitro (3, 8, 12, 26), although there was some suggestion of physical differences in gPr80gag-negative virions (8). In vivo, infection of gPr80gag-negative M-MuLV results in the appearance of wild-type revertants in tumors (3, 4) or at preleukemic times (4). For the neuropathic MuLV recombinant FrCasE, glyco-Gag has been shown to be a major pathogenic determinant associated with early efficient infection (10, 21, 22). Rapid in vivo reversion of glyco-Gag-negative FrCasE was also observed (4). Thus, glyco-Gag is important for MuLV replication in vivo, although it may not be absolutely required.
In these experiments, we have continued our in vivo and in vitro investigations on the role of gPr80gag in M-MuLV replication. The results confirm the importance of gPr80gag for efficient replication in vivo, and they indicate that this protein is involved in a late step in viral budding or assembly.
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UAG at nucleotide [nt] 608) between the start codons for gPr80gag and Pr65gag (8). 43D and 17-5 cells are NIH 3T3 fibroblasts stably infected with wild-type M-MuLV and Ab-X-M-MuLV, respectively. They were maintained in Dulbecco modified Eagle's medium (DMEM) supplemented with 10% calf serum and antibiotics. PA317/BAG cells are PA317 amphotropic MuLV-based packaging cells (18) stably transfected with an M-MuLV-based vector expressing bacterial beta-galactosidase and the bacterial neomycin resistance gene (BAG vector) (24). They were maintained in DMEM containing 10% fetal bovine serum (FBS), antibiotics, and 400 µg/ml G418. PA317/BAG 8065-2 and PA317/BAG
MCS cells are PA317/BAG cells stably transfected with the p8065-2 and pZeoSV
MCS plasmids, respectively. These cells were maintained in the same medium as that for PA317/BAG, but with the addition of 25 µg/ml Zeocin to select for stable expression of the pZeoSV-based plasmids. To prepare virus or vector stocks, 5 x 105 17-5 or 43D cells or 1 x 106 PA317/BAG-based cells were seeded on 10-cm plates in growth medium. Twenty-four hours later, the medium was changed. Twenty-four hours after the medium change, supernatants were collected and passed through a 0.45-µm filter. They were then divided into aliquots, frozen, and stored at 80°C.
Plasmids.
The gPr80gag expression plasmid p8065-2 was generated by first cloning M-MuLV gag sequences from nt 357 to 2235 (between restriction sites for Asp718 and EcoRI) into the pZeoSV expression plasmid (Invitrogen, Carlsbad, CA). The CUG start codon for gPr80gag was replaced by an AUG start codon by site-directed mutagenesis, resulting in the p8065-2 plasmid. pZeoSV
MCS is the pZeoSV plasmid from which the multiple cloning site has been removed.
Titrations. Titrations of wild-type M-MuLV and Ab-X-M-MuLV stocks were performed as described previously (27), using a focal immunofluorescence assay. Briefly, 7 x 104 NIH 3T3 cells were seeded per 6-cm plate 24 h prior to infection. Dilutions of the viral stocks were then adsorbed to the cells in the presence of 2 µg/ml Polybrene, followed by the addition of growth medium. At 4 days postinfection, plates were incubated for 1 h at 4°C with the 548 Gag monoclonal antibody, washed with phosphate-buffered saline (PBS) supplemented with 2% FBS, and then stained for 30 min at 4°C with a secondary fluorescein-conjugated goat anti-mouse immunoglobulin G (IgG) antibody (1:200 dilution in 2% FBS-PBS; ICN). Plates were washed three times, and foci of immunofluorescence were counted with a UV microscope.
For titration of BAG vector stocks, NIH 3T3 cells were plated 24 h prior to infection at 2 x 105 cells/6-cm plate. Dilutions of the stocks were adsorbed to the cells as described above, and the plates were stained with X-Gal (5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside) at 2 days postinfection. For X-Gal staining, cultures were fixed with 0.05% glutaraldehyde in PBS for 5 min and incubated overnight at 25°C in PBS containing 400 µg/ml X-Gal, and colonies of blue cells were counted under the microscope.
Inoculation of animals. Neonatal NIH Swiss mice were inoculated intraperitoneally with 0.2 ml of virus (ca. 105 IU) as described previously (15). Animals were sacrificed at different days postinfection, and cells from the bone marrow, spleen, and thymus were harvested. Single-cell suspensions in PBS were obtained and used in infectious center assays. Briefly, different dilutions of the cell suspensions were cocultured with NIH 3T3 cell cultures for 24 h, after which the hematopoietic cells were removed. Focal areas of infection were identified by immunofluorescence 4 days later, as described above.
DNA sequencing. To test for reversion of gPr80gag-negative virus in vivo, PCR amplification was carried out on DNAs from cells obtained from animals at different times postinfection. The PCR primers flanked the region of the nonsense mutation in Ab-X-M-MuLV. The forward primer corresponded to nt 100 to 121 (GGTCTCCTCTGAGTGATTGACT), and the reverse primer corresponded to nt 656 to 635 (GGTCAAACTTAAGGGAGTGGTA). The sequencing reaction was done on 500 ng of DNA, using an ABI BigDye Terminator kit.
Western blots. To quantify virus release, whole-cell lysates of PA317/BAG or PA317/BAG 8065-2 cells grown on 6-cm dishes for 24 h were harvested in RIPA buffer (150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulfate [SDS], and 50 mM Tris, pH 8.0). Prior to cell harvesting, 5 ml of tissue culture supernatant from these cells was subjected to ultracentrifugation at 45,000 rpm for 1 h in an SW41 rotor, and the pellets were resuspended in RIPA buffer. Samples representing equal amounts of starting cells were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and electrophoretically transferred to a nitrocellulose membrane. The membrane was incubated with a primary rabbit polyclonal antibody for M-MuLV p30 (CA) protein (1:3,333 dilution) (19), followed by washing and incubation with a horseradish peroxidase-conjugated secondary antibody (donkey anti-rabbit IgG; Amersham). Bands were detected with a Pico detection kit (Pierce) and X-ray film.
Metabolic labeling. Cells were seeded at 50% confluence in 10-cm dishes the night before metabolic labeling. On the day of labeling, the growth medium was aspirated and replaced with DMEM lacking methionine and cysteine (Sigma), followed by incubation for 10 min at 37°C. The cultures were then aspirated, and 2 ml of methionine- and cysteine-free DMEM containing 300 µCi of [35S]methionine-[35S]cysteine protein labeling mix (NEN) was added, followed by incubation at 37°C for 15 or 60 min. At the end of the pulse period, the radioactive medium was removed, the cells were washed with 5 ml Tris-buffered saline, regular growth medium was then added, and incubation was continued at 37°C. At 0, 1, 2, and 4 h of chase, the released virus was harvested from one dish per time point, and cell lysates were also prepared. For released virus, growth medium (cell supernatants) was collected, passed through a 0.45-µm filter, and concentrated by ultracentrifugation in a Beckman SW41 rotor at 25,000 rpm for 1 h at 4°C. Pelleted virus was resuspended in 200 µl lysis buffer (1% Triton X-100, 1% sodium deoxycholate, 30 mM NaCl, 25 mM Tris-HCl, pH 8.0). For cell lysates, cells were washed with 5 ml cold Tris-buffered saline, followed by the addition of 1 ml lysis buffer. After incubation for 5 min at room temperature, the lysate was harvested and nuclei were removed by centrifugation (10 min in a microcentrifuge).
Continuous labeling was performed similarly to pulse-chase labeling, except that the labeling medium consisted of methionine- and cysteine-free DMEM containing 10% complete DMEM. Harvest of released virus and cell lysates was done as for the pulse-chase experiments.
The amount of radioactivity in released virus or intracellular Gag protein was determined by immunoprecipitation with a rabbit polyclonal antiserum raised against M-MuLV CA (5), as described previously. Half of the cell lysates or virus supernatants from each time point were incubated with diluted antiserum for 2 h at 4°C in a total volume of 500 µl, with rocking. Protein A and G agarose beads (Roche Diagnostics) were diluted 1:20 in lysis buffer, and 100 µl of the diluted beads was added to each sample, followed by incubation at 4°C for 2 h on a rocker. The beads were then washed three times with lysis buffer, dried, and resuspended in SDS sample buffer. The samples were boiled for 10 min, the beads were removed, and the samples were then loaded onto 10% polyacrylamide gels in SDS. SDS-PAGE was carried out, followed by drying and autoradiography of the gels.
AFM. Atomic force microscopy (AFM) of virus-infected or vector-producing cells was performed as described previously (13). Cells were grown on glass coverslips. They were then fixed with 0.05% glutaraldehyde in PBS and postfixed with a 1% solution of osmium tetroxide in double-distilled H2O. The samples were dehydrated and imaged as previously described (13).
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FIG. 1. gPr80gag and Ab-X-M-MuLV. The relationship of the coding sequences for Pr65gag and gPr80gag is shown. gPr80gag is translated from the same reading frame as Pr65gag, but from an upstream CUG initiation codon. The location of the stop codon present in the genome of Ab-X-M-MuLV is shown (X); it is upstream from the Pr65gag AUG codon.
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FIG. 2. Establishment of in vivo infection by Ab-X-M-MuLV. Neonatal NIH Swiss mice were inoculated intraperitoneally with wild-type M-MuLV or Ab-X-M-MuLV. At different days postinoculation, the animals were sacrificed, and single-cell suspensions were prepared from bone marrow, thymus, and spleen. The levels of infection (number of infectious centers [ICs]/106 cells plated) are shown. Each point represents the result for one animal. Shaded boxes, wild-type M-MuLV (43D cells); solid diamonds, Ab-X-M-MuLV (17-5 cells). (A) Bone marrow; (B) thymus; (C) spleen.
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TABLE 1. Appearance of revertant gPr80gag-positive viruses in Ab-X-M-MuLV-infected micea
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FIG. 3. AFM of infected cells. AFM was performed on NIH 3T3 cells infected with wild-type M-MuLV (43D) or Ab-X-M-MuLV (17-5). (A) Uninfected NIH 3T3 cell; (B to D) wild-type M-MuLV-infected 43D cell at three magnifications; (E to G) Ab-X-M-MuLV-infected 17-5 cell at three magnifications. The widths of the fields shown are indicated in micrometers. The white bars indicate the widths of the particles. The surface viral structures are typical of infected cells and absent from uninfected NIH 3T3 cells, as described previously (13).
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) sequences (17). If these packaging cells express a transfected MuLV-based vector that does not itself encode gPr80gag, then the packaging cells will produce the vector particles in the absence of gPr80gag. We found that the amphotropic MuLV vector packaging line PA317 (18) consistently showed the tube phenotype. Figure 4A to C show AFM of PA317 cells stably expressing an M-MuLV-based vector expressing the bacterial ß-galactosidase gene (BAG vector) (24), PA317/BAG. The surfaces of these cells were uniformly covered with viral "tubes," and few spherical particles were evident. To test if the tube phenotype was related to the lack of gPr80gag expression in the PA317 cells, the PA317/BAG cells were stably transfected with an expression plasmid for gPr80gag, p8065-2 (Fig. 5A). In p8065-2, the CUG initiation codon for gPr80gag was converted to a more efficient AUG codon, and expression was driven from a simian virus 40 early viral promoter from the backbone expression plasmid pZeoSV. This leads to high-level expression of gPr80gag in transfected cells (Fig. 5B). When PA317/BAG cells were transfected with p8065-2 and selected for stable transfection by growth in Zeocin, the resulting PA317/BAG-8065-2 cells consistently showed typical 145-nm spherical virus particles on the surface instead of the tubes (Fig. 4D to F). These experiments strongly suggest that expression of gPr80gag in PA317/BAG cells converted the viral tube-like structures to spherical particles, consistent with a role for gPr80gag in a late step in viral budding or release.
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FIG. 4. AFM of PA317/BAG cells. AFM of the Am-MuLV-based retroviral vector packaging cell line PA317 is shown. These cells were stably transfected with the BAG vector plasmid and produced infectious BAG vector. (A to C) Surface of a PA317/BAG cell at three magnifications. (D to F) Surface of a PA317/BAG cell expressing gPr80gag (PA317/BAG 8065-2) at three magnifications. Note the presence of spherical particles instead of tubes.
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FIG. 5. gPr80gag expression plasmid. (A) Organization of the gPr80gag expression plasmid p8065-2. The CUG initiation codon has been converted to an AUG codon; the backbone expression plasmid is pZeoSV. (B) Western blotting of PA317/BAG versus PA317/BAG 8065-2, using two antibodies raised against the N terminus of gPr80gag (a gift of John Portis) (9). The location of gPr80gag is indicated.
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MCS, and stably transfected cells were selected by growth in medium containing Zeocin. At the end of selection (2 weeks), supernatants from equal numbers of transfected cells were harvested, and the amounts of infectious BAG vector released were measured by titration of the supernatants on NIH 3T3 cells, followed by X-Gal staining for ß-galactosidase (Fig. 6A). The p8065-2-transfected packaging cells produced about five times as much infectious BAG vector as those transfected with the backbone vector. The transfected cultures were passaged for an additional 4 weeks, at which time the amounts of vector released were again titrated. In the passaged cultures, the difference in infectious vector production between gPr80gag-positive packaging cells was 10-fold. The number of virions released from the PA317/BAG cells at 6 weeks was also assessed by SDS-PAGE and Western blotting (Fig. 6B). Consistent with the infectivity measurements, the gPr80gag-expressing PA317/BAG cells released more virus particles than did the nonexpressing cells. While more viral protein was produced from the PA317/BAG-8065-2 cells, the difference did not appear to be quite as much as the 10-fold difference evident in the infectivity assay. This might have been influenced by the fact that packaging cells such as PA317 cells are continually releasing viral particles regardless of whether they are packaging a vector RNA or not. In sum, these results supported the conclusions from the AFM experiments that gPr80gag facilitates a late stage in MuLV budding or release.
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FIG. 6. Vector release from PA317/BAG cells. (A) PA317/BAG cells were transfected with the gPr80gag expression plasmid p8065-2 or the backbone plasmid pZeoSV MCS, and the cells were grown in medium containing Zeocin to select for stable transfectants. After 2 weeks (when selection was complete), supernatants were collected from the cultures and assayed for production of infectious BAG vector as described in Materials and Methods. The cultures were passaged for an additional 4 weeks in the presence of Zeocin, and the amounts of infectious BAG vector released were again assayed. The titrations were performed with four replicates for each time point. (B) The amount of vector particles released from transfected cultures at the 6-week time point was determined by SDS-PAGE and Western blotting for viral CA (p30) protein. The amount of Gag protein in the cell extracts is also shown; samples representing equal amounts of cells were loaded in all lanes.
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To more directly test if virus release from PA317/BAG cells was enhanced in the presence of glyco-Gag, PA317/BAG cells transfected with either p8065-2 or the backbone vector (Fig. 6) were pulse labeled with [35S]methionine and cysteine for 15 min, followed by a chase with unlabeled methionine and cysteine for periods of up to 4 h, and the amounts of labeled virus released were quantified by immunoprecipitation of viral pellets with anti-CA antibody, followed by SDS-PAGE and autoradiography. As shown in the top panels of Fig. 7, virus release (sup) from cells expressing glyco-Gag was detected (Fig. 7C), while the amount released from PA317 or PA317/BAG cells was not detectable. Even when the pulse period was increased to 1 hour (Fig. 7, D to F), the amount of virus released in the absence of glyco-Gag was below detection. Finally, cells were continuously radiolabeled (Fig. 7, G to H), and virus release from PA317/BAG cells could be detected (Fig. 7G), although it was much less (<10-fold) than that from cells expressing glyco-Gag (Fig. 7H). In addition, the relative labeling of Gag protein in the cells was similar in cells expressing or not expressing glyco-Gag, as evidenced from labeling of Pr65gag (left four lanes in each panel). These results confirmed that glyco-Gag increased the rate of virus release from PA317/BAG cells without altering the overall rate of Gag protein synthesis.
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FIG. 7. Virus release by metabolic labeling. PA317, PA317/BAG + MCS, and PA317/BAG + 8065-2 cells, as described in the legend to Fig. 6, were labeled with [35S]methionine-cysteine by a 15-min pulse-chase (A to C), 60-min pulse-chase (D to F), or continuous labeling (G and H). One-half of the released virus or cell lysate for each sample was analyzed by SDS-PAGE. The lengths of the chases or continuous labels are indicated in hours at the top of each panel (0 to 4 h); cell lysates (cell) are shown in the left four lanes, and released viruses (sup) are shown in the right four lanes. The locations of Pr65gag and cleaved CA protein in released virus are indicated. The more slowly migrating radioactivity in the cell lysates is nonspecific binding; a partial proteolytic cleavage product of Pr65gag is evident in the cell lysates as well (6). gPr80gag is evident in the cell lysate from the 15-min pulse (*); during the chase, this protein was glycosylated to form higher-molecular-weight products (6). Autoradiographic exposures were done for 2 weeks at 80°C.
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AFM of cells producing MuLV particles in the absence of gPr80gag (Ab-X-M-MuLV-infected NIH 3T3 cells [17-5 cells] and the Am-MuLV retroviral packaging line PA317) showed the presence of viral tube-like structures at the cell surface instead of spherical particles. The tube phenotype was due to the lack of gPr80gag as established by vectored expression of gPr80gag in PA317 cells, which resulted in the appearance of spherical particles at the surface instead of the tubes. This indicated that gPr80gag may be involved in a late step in viral budding or releaseperhaps in "pinching off" of spherical virions during budding at the cell surface. A role for gPr80gag in virus budding or release was also supported by the finding that PA317 cells expressing gPr80gag produce 5 to 10 times more viral vector particles than do parental PA317 cells (measured either by infectivity or by viral protein release).
The relative defect in virion release from M-MuLV-infected cells lacking gPr80gag appears to be more a kinetic effect or delay in release than an absolute block. We previously noted a somewhat different buoyant density of Ab-X-M-MuLV virions compared to wild-type particles (8), but on the other hand, the relative infectivities of the two viruses in in vitro plaque assays were similar. The fact that Ab-X-M-MuLV virions are infectious strongly implies that maturation and cleavage of the viral polyproteins (Pr65gag, Pr180gag-pol, and Pr80env) occur at some level, since cleavage is necessary for the generation of infectious virus. Indeed, cleaved CA protein is found in particles from gPr80gag-negative cells (e.g., see Fig. 6). AFM of Ab-X-M-MuLV virions released from 17-5 cells revealed standard 145-nm spherical particles, not tubes or multiple virions (Y. Kuznetsov and A. Low, unpublished data). Thus, virions released from gPr80gag-negative cells appear to be normal, although they are released less efficiently in the absence of the protein.
The viral release or budding defect in gPr80gag-negative MuLV mutants appears to be distinct from that of well-characterized late domain mutants (30). For M-MuLV, the L domain maps to the p12 domain of Pr65gag, not gPr80gag (31). The L domain (containing PPPY motifs for M-MuLV) (31) is responsible for binding of the Pr65gag polyprotein to components of the cellular vesicular export machinery, which is important for its delivery to the plasma membrane for assembly into virions. L domain mutants of M-MuLV also show a defect in virion release, but in this case the cell surfaces are covered with spherical particles that appear tethered to each other and to the cell (29) rather than the tubes observed in gPr80gag-negative infected cells. Moreover, M-MuLVs with L domain mutations are noninfectious, and they have immature cores indicative of uncleaved Gag and Gag-Pol polyproteins (31). An M-MuLV deleted of the entire p12 domain of Gag does show tube-like viral structures on the cell surface (29), but they differ from the tubes described here in their lack of infectivity.
The mechanism by which gPr80gag facilitates virion budding or release is currently unclear. gPr80gag is a type II integral membrane protein, with the amino-terminal gPr80gag unique domain exposed in the cytosol (11). Large amounts of gPr80gag (or its cleavage products) are not present in virions (5), although small amounts have been detected (9). One possible model could be that gPr80gag interacts with a cellular protein(s), localizing that protein to the plasma membrane, where it may facilitate pinching off or budding of nascent virions. It seems possible that gPr80gag could facilitate such a process but that in the absence of gPr80gag, the cellular protein could still function at some level. Depending on the relative abundance (or intracellular distribution) of such a cellular protein and the relative rate of viral production, the absence of gPr80gag might or might not have a visible effect on virus budding or release. Such a model could explain the variability of the "tube" phenotype in the AFM of Ab-X-M-MuLV-infected NIH 3T3 cells (17-5 cells). Indeed, in 17-5 cell cultures, if cells showed the tube phenotype, they had large numbers of tubes present (Y. Kuznetsov and S. Datta, unpublished data). In the future, it will be important to identify cellular proteins that interact with gPr80gag.
In these experiments, restoration of gPr80gag in PA317 cells with the p8065-2 expression vector was important in establishing the role of gPr80gag in viral budding or release. While it was possible to prepare stable p8065-2 transfectants of PA317 cells (or PA317 derivatives expressing retroviral vectors, such as the BAG vector), we could not generate stable p8065-2 transfectants of standard NIH 3T3 cells or the NIH 3T3-based M-MuLV vector packaging line
2 (17). One possible explanation could be that high-level expression of gPr80gag from p8065-2 could be toxic in those cells due to sequestration of the putative cellular interacting protein, if that protein is essential for cell survival. The more moderate levels of gPr80gag expressed from the CUG initiation codon of genuine M-MuLV mRNA might not lead to this toxicity. The reasons why PA317 cells are not affected by p8065-2 are unclear, since PA317 cells are NIH 3T3-based cells (18).
Finally, it should be noted that essentially all MuLV-based vector packaging lines do not express glyco-Gag, for the reasons described in Results. It seems possible that the expression of gPr80gag in packaging lines could increase the yield of infectious vectors from these cells, as shown in these experiments for the BAG vector. This could be useful for future gene therapy experiments employing gammaretrovirus-based vectors.
We thank John Portis for the gift of antibodies. The support of the DNA sequencing shared resource of the Chao Family Comprehensive Cancer Center is acknowledged.
Published ahead of print on 31 January 2007. ![]()
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