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Journal of Virology, March 2007, p. 2726-2735, Vol. 81, No. 6
0022-538X/07/$08.00+0 doi:10.1128/JVI.02571-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.
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Department of Microbiology and Immunology, Cornell University, Ithaca, New York 14853,1 Resource for Visualization of Biological Complexity, Wadsworth Center, Albany, New York 12201-05092
Received 21 November 2006/ Accepted 3 January 2007
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5 nm in width. The fibers contacted both fivefold symmetrical vertices (pentons) and sixfold symmetrical faces (hexons) of the nucleocapsid, although relative to the respective frequencies of these subunits in the capsid, fibers engaged pentons more frequently than hexons. (ii) Fibers of similar dimensions bridged the virion envelope and surface of the nucleocapsid in perinuclear virions. (iii) The tegument of perinuclear virions was considerably less dense than that of extracellular virions; connecting fibers were observed in the former case but not in the latter. (iv) The prominent external spikes emanating from the envelope of extracellular virions were absent from perinuclear virions. (v) The virion envelope of perinuclear virions appeared denser and thicker than that of extracellular virions. (vi) Vesicles near, but apparently distinct from, the nuclear membrane in single sections were derived from extensions of the perinuclear space as seen in the electron tomograms. These observations suggest very different mechanisms of tegumentation and envelopment in extracellular compared with perinuclear virions and are consistent with application of the final tegument to unenveloped nucleocapsids in a compartment(s) distinct from the perinuclear space. |
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In a process unique to herpesviruses, nucleocapsids bud through the inner nuclear membrane (INM) of infected cells into the perinuclear space, a compartment that is continuous with the lumen of the endoplasmic reticulum (ER), to become virions. The envelope of these nascent virions is therefore derived from the INM. In alphaherpesviruses, nucleocapsids are enveloped preferentially over A or B capsids (40). In one model of virion egress, the virion envelope derived from the INM fuses with the outer nuclear membrane (ONM), dumping the nucleocapsid into the cytoplasm, where it subsequently undergoes a second envelopment step(s) in the Golgi apparatus, in the trans-Golgi apparatus network, or in vesicles derived from these compartments (6, 31, 45). Others have proposed that some nucleocapsids pass through expanded nuclear pores, receiving tegument prior to or at the time of budding into other organelles such as the ER or Golgi apparatus (28, 48). (For purposes of discussion this will be termed the expanded nuclear pore model.) In both of these cases, the final virion envelope is (in the deenvelopment model) or can be (in the expanded nuclear pore model) derived from organelles other than the INM. Alternatively, it has been proposed that one or more enveloped virions bud from the ONM, forming transport vesicles. Fusion of the outer membrane of the transport vesicle with the Golgi apparatus or other membranes would deliver enveloped virions into the Golgi apparatus lumen for glycoprotein processing or, upon fusion with the plasma membrane, would deliver virions within the vesicle to the extracellular space (26). Thus, in this model, the original virion envelope derived from the INM is retained throughout virion egress.
The space between the nucleocapsid surface and the inner surface of the virion envelope is termed the tegument. The tegument of mature extracellular virions contains approximately 20 different proteins of varying stoichiometry, and electron tomography has shown that the tegument is arranged asymmetrically around the nucleocapsid as a series of concentric rings (22). Attachments of the innermost layer of mature tegument to capsid pentons have been observed, suggesting that they serve to anchor the tegument layer to the nucleocapsid (51). The means of attachment of the tegument to the virion envelope is uncertain, although interactions between some tegument proteins and some glycoproteins have been detected (8, 12, 17, 21).
The structure of the nucleocapsid has been determined to a resolution of 0.85 nm from electron cryomicroscopic studies, and this structure presumably reflects that of nucleocapsids within perinuclear virions (52). Other features of perinuclear virions, however, are poorly characterized. Transmission electron microscopic studies have indicated that perinuclear virions are morphologically distinct from extracellular particles. In particular, extracellular virions contain prominent spikes protruding from the virion envelope and a very densely stained tegument layer. Compared to their counterparts in extracellular virions, the external spikes of perinuclear virions are much less prominent, the tegument appears much less dense, and the virion envelope often appears denser (20). It is logical to propose that the tegument of perinuclear virions is relatively less dense because it contains less protein than its counterpart in extracellular virions, but this difference has not been well defined. In any event, these observations suggest that tegument proteins are applied to an unenveloped nucleocapsid, thus supporting either the expanded nuclear pore or deenvelopment model of virion egress.
Because perinuclear virions are difficult to separate from isolated cytoplasmic and extracellular virions, few studies have been undertaken to characterize the biochemical composition of perinuclear virions. By immunogold analyses, it has been determined that perinuclear virions and the INM of infected cells contain at least the integral membrane glycoproteins B, C, D, and M (gB, gC, gD, and gM, respectively), a myristylated and palmitoylated protein encoded by UL11, VP16 (at least when fused to green fluorescent protein), and a protein complex containing the integral membrane protein pUL34 and its interaction partner pUL31 (1, 2, 9, 24, 24, 32, 39, 47). Interestingly, the UL31 and UL34 proteins are largely absent from extracellular virions, suggesting that the initial virion envelope derived from the INM is replaced during virion egress (18, 39).
Under the hypothesis that such information would provide insight into the assembly pathway of herpesviruses and the envelopment reaction in particular, the major goal of this study was to generate a three-dimensional structure of nascent virions undergoing envelopment at the INM.
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Conventional fixation. Cells were fixed with 4% paraformaldehyde (Electron Microscopy Sciences) and 0.25% glutaraldehyde (Electron Microscopy Sciences) in 0.1 M NaP buffer, pH 7.4, for 30 minutes at room temperature and then 90 minutes at 4°C. Cells were washed three times for 5 min each with 0.1 M sodium phosphate buffer and then dehydrated with a graduated series of ethanol concentrations (10%, 30%, 50%, 70%, and 100%) at 4°C and then 20°C. This was followed by stepwise infiltration with Epon 812 resin (Electron Microscopy Sciences catalogue no. 14381) over the course of 48 h at 20°C. Samples were aliquoted into gel capsules, and the resin was polymerized by exposure to UV light.
High-pressure freezing/freeze substitution. A cell slurry was made by resuspending pelleted infected cells in a small amount of medium. Microdialysis tubing (200-µm diameter; Spectrum Labs) was filled with the cell slurry by capillary action and immediately submerged in 1-hexadecene. The tubing was cut with a scalpel to fit Staehelin freezing hats (Ted Pella). Each hat was filled with four to six pieces of tubing. The remaining empty space was filled with 1-hexadecene. Samples were frozen with liquid nitrogen under high pressure using a Bal-Tec HPM010 machine. Samples were then freeze substituted in 0.5% glutaraldehyde with 0.1% tannic acid in acetone at 90°C for 24 h. The acetone was replaced three times at 90°C for 30 min each time. Substitution was continued with 1% OsO4 made from crystal and 0.1% uranyl acetate in acetone at 90°C for 24 h. The temperature was allowed to rise to 20°C overnight. The acetone was replaced in three sequential steps with Epon 812/araldite, first at 20°C, then at 4°C, and finally at room temperature. Each replacement step took 1 h.
Samples were put into 50/50 uncatalyzed Epon-Araldite-acetone at room temperature overnight and were then changed to 100% uncatalyzed Epon-Araldite for 24 h. Samples were then placed into catalyzed Epon-Araldite for 8 h and then changed into fresh catalyzed Epon-Araldite and cured at 60°C for 48 h.
Electron tomography and three-dimensional reconstruction. Sections were cut at a 220-nm thickness and collected on Formvar-carbon-coated 200-mesh copper grids. Grids were poststained with 2% uranyl acetate for 20 min and Reynolds lead citrate for 5 min. Dual-axis tomographic tilt series were carried out with an angular range of 120° and a tilt interval of 2°. Tilt images were recorded with a JEOL JEM-4000FX operated at 400 kV in zero-loss mode using a Gatan GIF 2002 imaging energy filter. The image pixel size relative to the specimen was 1 nm. The total electron dose for a dual-axis tilt series was about 10,000 e/nm2.
Tilt images were aligned, and tomographic reconstructions were computed using SPIDER (16, 36). The limits to resolution in the reconstructions, set by data collection geometry and specimen size, were approximately 5 to 6 nm in the section plane and 7 to 8 nm normal to the section (15). Tomograms were examined slice by slice using WEB (34) and ImageJ (http://rsb.info.nih.gov/nih-image), and 1.0-nm-thick slices were selected for display. Surface-rendered models were made using Amira. The three-dimensional models shown came from a single representative tomogram.
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Although features in the tegument layer of high-pressure-frozen freeze-substituted samples were similar to those observed in samples processed conventionally, the appearance of DNA within the nucleocapsid varied considerably in samples prepared using the different techniques. High-pressure-frozen, freeze-substituted specimens contained densely stained cores that mostly filled the inner cavity of the nucleocapsid, whereas conventionally fixed material contained considerably more space between the inner surface of the nucleocapsid and the electron opaque core (compare virion in Fig. 6 that was fixed conventionally with virions in Fig. 1, 3, and 5, which were derived from high-pressure-frozen, freeze-substituted material). As a result of these observations and the implication that freeze substitution was less prone to fixation artifacts, features in tomographic reconstructions detailing virion morphology were always verified in freeze-substituted specimens.
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FIG. 6. Electron tomographic reconstruction of virion in the perinuclear space and putative transport vesicle. Cells were infected with HSV-1(F) and were embedded and stained conventionally. The number of the slice in the reconstruction (of 150 total) is indicated in each image. The membrane of the putative transport vesicle is indicated with a large arrow. The position of the ONM is indicated with a small arrow.
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FIG. 1. One-nanometer-thick slices from a tomographic reconstruction of a type B capsid attached to the INM. Cells infected with HSV-1 were high-pressure frozen and freeze substituted. The slice number of each image (out of a total of 180 slices) is indicated in the lower left of each panel. The cytoplasm is at the top of the image, and the nucleus is at the bottom. An arrow indicates a single bridging rod emanating obliquely from the capsid surface. Cyto, cytoplasm; Nuc, nucleus.
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FIG. 3. One-nanometer-thick slices from a tomographic reconstruction of a nucleocapsid completing envelopment at the INM. The sample was prepared as for Fig. 1. The slice number of each image (out of a total of 235 slices) is indicated in the lower left of each panel. The position of the INM is indicated with an arrow. Triangles in slice 120 indicate two adjacent angular vertices with bridging rods, whereas the relatively planar surface between them is largely devoid of bridging rods. Nuc, nucleus; Cyto, cytoplasm.
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FIG. 5. One-nanometer-thick slices from a tomographic reconstruction of an extracellular virion. The sample was prepared as described in the legend to Fig. 1. The number of the section (of a total of 180) is indicated at the bottom of each image.
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The patches of INM abutting B and C capsids were often markedly more densely stained than the rest of the INM (Fig. 1), although in some preparations this was less apparent, presumably because of variability in staining from section to section. The patches of INM abutting capsids were often indented. These indentations were generally C shaped in single slices taken through an equatorial plane of the capsid (Fig. 1), and in three-dimensional reconstructions, they were generally cup-like, with the densely stained membrane extending over the full area that was adjacent to the capsid. (Fig. 1, and models Fig. 2C and 2D; see also movie S1 of raw data in the supplemental material).
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FIG. 2. Models of the tomogram illustrated in Fig. 1. A. Model created by computationally fitting surfaces to densities in the tomogram, representing the capsid surface (purple) and the thickened region of the INM (green). Bridging rods (yellow) were segmented by manual tracing in sequential 1-nm sections. B. Similar to panel A, but the INM is made translucent to better illustrate the attachments of the bridging rods. C. Side view of a model created by manual tracing and surface rendering of the resulting contours. The inner and outer surfaces of the capsid (purple) and the INM (green) are shown, with the bridging rods (yellow) connecting the outer surface of the capsid with the inner surface of the thickened region of the INM. D. Same as panel A, but viewed from the cytoplasmic side to show the orientation of the bridging rods relative to the capsid surface. The inner protein sphere or scaffold does not appear in the model.
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In order to examine the bridging fibers relative to the virion surface in more detail, the fibers in individual slices of a given reconstruction (Fig. 2) and in some cases the capsid surface (Fig. 2A and B) were traced by hand. In both cases, a feature was traced in each slice only if it was apparent in three consecutive slices. The resultant modeled reconstructions revealed the presence of densely stained, rod-like structures bridging the capsid surface and INM. The rods generally projected radially away from the nucleocapsid surface, although many emanated obliquely from the capsid surface, rather than at right angles (an example is indicated by an arrow in Fig. 1). By using the known diameter of the capsid (125 nm), the bridging rods were calculated to be approximately 8 to 19 nm in length with a thickness at or below the resolution of the reconstruction, about 5 nm in the plane of the sections. In most instances, the rod cross sections were elongated by about a factor of 1.3 in the normal direction, a result of the limited range over which the sections were tilted in the electron microscope (±60°). The longest rods were generally located at points within the interface of capsid and INM that were farthest from the center of the capsid. The length of the rods corresponded roughly to the width of the tegumental space located between the nucleocapsid surface and the inner surface of the virion envelope as revealed in tomograms of perinuclear virions (see below). In general, the rods were located only at the interface between the INM and the nucleocapsid surface (i.e., they did not emanate from regions of the nucleocapsid not directly opposed to the INM).
The next set of reconstructions was generated to determine whether features of capsids engaging the INM were reflected in perinuclear virions. Type C capsids within the perinuclear space that were mostly or completely enveloped by the INM in single thick sections were studied by electron tomography. Angular vertices were only occasionally observed in tomographic slices. The spacing of vertices (approximately 60 nm apart) was consistent with that expected of capsid pentons. In single thick sections, the distance between the nucleocapsid surface and inner surface of the virion envelope varied from as little as approximately 4 to 5 nm near the angular portions of the capsid surface to approximately 13 nm opposite relatively flat faces (Fig. 3 and 4; see also movie S2 in the supplemental material).
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FIG. 4. Models of the tomogram shown in Fig. 3. A. Thick slice through the center of the virion. The nucleocapsid shell (purple) and virion envelope (green) are modeled by computationally fitting surfaces to densities in the tomogram, while the ONM (blue), INM (green), and bridging rods (yellow) are modeled by manual tracing. The DNA within the core is not shown. B. Side view of the nucleocapsid surface (purple) and the attached bridging rods (yellow). The horizontal elongation of the rods is an artifact due to the limited tilt range of the tomogram. C and D. Cutaway views of the enveloping nucleocapsid shown as a surface-rendered model after manual tracing. The nucleoplasm is on the bottom and cytoplasm on the top. The near portion of the model has been cut away for illustration. The nucleocapsid (purple), bridging rods (yellow), virion envelope (green), INM (green), and ONM (blue) are shown. As only the surfaces were rendered, the nucleocapsid and nascent virion envelope appear as hollow shells in this cutaway view. Note that the virion envelope is more than twice as thick as the neighboring INM.
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The rods were distributed asymmetrically on the surface of the otherwise roughly symmetrical nucleocapsid and projected at various angles from the nucleocapsid surface but generally radially away from the nucleocapsid. Some rods projected obliquely from the nucleocapsid surface within the tegumental space. The rods linked the virion envelope with both angular portions (Fig. 3, indicated by triangles) and reasonably flat faces of the nucleocapsid. Many regions of the capsid surface also lacked obvious bridging rods, and these surfaces were more likely flattened than angular (Fig. 3, region between triangles). Distances between sites of contact of the bridging rods varied between about 4 and 13 nm along the nucleocapsid surface. With the caveat that some bridging rods may lie obliquely in the tegument and therefore might contact sites other than their anchoring points in the nucleocapsid, the presence of bridging rod attachment points at distances closer than 64 nm (theoretical distance between pentons) argues that the bridging rods attach to faces of the capsid (hexons) as well as their vertices (pentons). On the other hand, the observation that some planar surfaces were largely spared of bridging rods argues that pentons are more frequently engaged than hexons.
Portions of the ONM bordering the nascent virion envelope protruded into the cytoplasm, with regions closest to the virion envelope protruding most dramatically (Fig. 3). Interestingly, at no point did the ONM contact the nascent virion envelope. Rather, the space between these membranes was maintained at a minimum distance of approximately 15 nm.
Comparison of perinuclear and extracellular virions. Three-dimensional reconstructions of extracellular (Fig. 5) and perinuclear (Fig. 3 and 4) virions were compared, and the following were noted. (i) The virion envelope in extracellular virions was studded with rod-like densities that projected radially outward from the virion envelope. These spikes or virion glycoproteins varied in shape and length but were up to about 20 nm long. They were generally narrower in regions closer to the virion envelope and wider at more peripheral regions. Perinuclear virions did not have comparable projections. (ii) The tegument of extracellular virions was much more densely stained than that of perinuclear virions. The bridging rods of perinuclear virions that connected the nucleocapsid surface to the virion envelope were not readily apparent in the tegument of extracellular virions. (iii) The distances and orientations of the nucleocapsid relative to the virion envelope were asymmetric in both perinuclear and extracellular virions. In the electron tomogram of the extracellular virion shown in Fig. 5, for example, some sections in the reconstructions revealed a spherical virion envelope whereas in others the virion envelope was more pear shaped. In others (not shown) the virion envelope contained a bulge of tegument at one pole, much as previously described (22).
Transport vesicles. Occasionally, single or multiple virions, surrounded by membrane, were noted in the cytoplasm near the nuclear membrane. Such structures have been proposed to represent transport vesicles that are separate from membranous organelles. These vesicles are potentially significant because fusion of the vesicle with the inner surface of the plasma membrane would be expected to deliver virions to the extracellular space, thus providing a simple model of virion egress. We therefore examined whether structures were discontinuous as seen in single sections or were continuous with other organelles such as the ER or nuclear membrane.
Three-dimensional reconstructions of thick sections revealed that, of the putative transport vesicles located near the nuclear membrane that were examined, all were in fact located within extensions of the perinuclear space (Fig. 6). We were unable to substantiate the existence of distinct transport vesicles near the nuclear membrane in these studies and speculate that many of the structures noted previously represent cross sections of nuclear membrane with virions contained within the perinuclear space.
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The identity of the protein(s) comprising the bridging rods is not known, and it is not known if it corresponds to similar-appearing fibers noted in extracellular virions, speculated to be composed of filamentous actin (22). The viral proteins that are most likely to form the bridging rods would be components of perinuclear virions that have a size sufficient to account for the observed 8- to 19-nm length. The list of virally encoded proteins potentially fulfilling these criteria includes the pUL31/pUL34 protein complex. These proteins are particularly strong candidates because the UL31 and UL34 proteins are essential for envelopment at the inner nuclear membrane in a number of different cell lines and are known to become incorporated into perinuclear virions (7, 29, 38, 41). UL34 encodes a type II integral membrane protein embedded in the INM with a predicted 27,265-Da portion of the 29,789-Da protein located in the nucleoplasm, whereas the UL31 protein with an Mr of 33,951 directly interacts with UL34 and anchors it to the nuclear lamina, possibly by also interacting with lamin A/C (30, 37-39, 43, 44). Another possible candidate is the UL25 protein that has been shown to associate with the external surfaces of purified capsids (27, 34, 46). Although ample B capsids abut the INM in HSV-infected cells, C capsids are preferentially enveloped (40). The presence of many capsids abutting the INM of cells infected with a pseudorabies virus mutant lacking UL25 argues against the possibility that UL25 is required to tether nucleocapsids to the INM (27). On the other hand, the observation that C capsids contain more UL25 than B capsids is consistent with the notion that UL25 protein might be involved in selective envelopment of C capsids (42).
It is also possible that the bridging rods comprise one or more proteins derived from the host cell rather than from the virus. A large number of cellular proteins potentially match the size and INM location of the rods observed in these studies including actin, lamins, and lamin receptors. Actin is a strong candidate given the presence of actin in herpesvirions, the association of F actin with capsids in infected-cell nuclei, and the dependence of active intranuclear movement of capsids on actin (3, 10, 11, 13, 14, 25, 50). Lamins are less likely because they are locally depolymerized to allow access of nucleocapsids to the INM; thus, lamin filaments would not be expected to become incorporated into nascent virions (4, 35, 37, 44). Efforts to identify the components of the bridging rods are under way.
Previously noted differences between perinuclear and extracellular virions fixed in glutaraldehyde and embedded in glycid ether 100 (17) were confirmed in this work using high-pressure freeze-substitution techniques. Specifically, the tegument of perinuclear virions is much less dense overall and the virion envelope is considerably denser. Moreover, projections emanating from the external surface of the extracellular virion envelope are much more prominent, wider in diameter, and longer. Although the precise reasons for these differences are not known, it is logical to presume that the extensive changes in the external spikes are a consequence of more extensive glycosylation in the mature glycoproteins of extracellular virions. The increased stain density of the tegument of extracellular virions also suggests that additional tegument proteins are applied after the initial envelopment step at the INM. These data are therefore most consistent with a model in which the virion envelope initially obtained from the INM is lost in a subsequent fusion event (deenvelopment) and then replaced by budding into a cytoplasmic membrane compartment (reenvelopment), as originally proposed by others (45). These data are also theoretically consistent with the possibility that the tegument is applied to nucleocapsids that pass through expanded nuclear pore complexes into the cytoplasm (28). On the other hand, we were unable to substantiate the expansion of nuclear pores as reported in previous studies, although our search was not exhaustive (28, 48).
One argument supporting the possibility that the original virion envelope is maintained throughout virion egress has been the longstanding observation that perinuclear virions can be observed within cytoplasmic vesicles. A simple model of virion egress suggests that fusion of this transport vesicle with the plasma membrane should deliver the enclosed virion to the extracellular space. In this report, however, we noted that a number of apparent vesicles containing virions were, when followed through a three-dimensional reconstruction, actually irregular extensions of the nuclear membrane, with lumens continuous with the perinuclear space or endoplasmic reticulum. These observations are also consistent with the deenvelopment model of virion egress. On the other hand, we cannot exclude the possibility that distinct vesicles containing nascent virions exist; instead, we would argue that if such transport vesicles do exist, they are more rare than previously supposed. Electron tomograms of the entire nuclear membrane and contiguous ER of infected cells would be useful to confirm the existence of such vesicles.
The studies at Cornell University were supported by NIH grant AI 52341 to J.D.B. The microscopy and image processing work was supported by NIH grant RR01219 (J. Frank, Principal Investigator) through the NCRR Biomedical Research Technology Program.
Published ahead of print on 10 January 2007. ![]()
Supplemental material for this article may be found at http://jvi.asm.org/. ![]()
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