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Journal of Virology, March 2007, p. 2646-2655, Vol. 81, No. 6
0022-538X/07/$08.00+0 doi:10.1128/JVI.02631-06

Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892
Received 28 November 2006/ Accepted 11 December 2006
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The inability to discern clear continuity of the viral crescent membrane with a cellular organelle (4, 7, 8, 10) led to speculation that the viral membrane is formed by a novel mechanism. Skepticism regarding de novo membrane formation, however, inspired efforts to obtain evidence for the origin of the IV membrane from a component of the cellular secretory pathway. MV transmembrane proteins in the endoplasmic reticulum-Golgi intermediate compartment (ERGIC) and ERGIC proteins in tubules or vesicles near crescent membranes were detected by immunogold labeling (5, 6, 13, 20, 22, 28-30), although trafficking of proteins between cellular and viral membranes was not demonstrated. The finding that expression of a dominant-negative form of Sar1 GTPase, which arrests COPII transport, had no effect on IV and MV production suggested that the viral membranes could arise directly from the ER (11). However, the absence of signal peptide cleavage or glycosylation made it difficult to confirm either ER or ERGIC trafficking by biochemical methods. To address this problem, we constructed a chimeric protein in which the N terminus of the A9 MV protein was replaced with a heterologous signal peptide; the latter was cleaved, and the truncated protein was incorporated into IVs and MVs (12). Since signal peptidase is located within the lumen of the ER, these data provided evidence for an operative pathway between the ER and the viral membrane. Furthermore, we showed that replacing the cytoplasmic tail (CT) of A9 with one containing COPII-binding sites diverted it to the Golgi apparatus, consistent with initial ER insertion (12). The purpose of the present study was to determine the putative signals that direct viral transmembrane proteins to the nascent IV membrane.
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NT, pGA9
TM, pGA9
tTM,
pGA9
CT, pGNT-A9, pGTM-A9, pGtTM-A9, pGCT-A9,
pGA9(TM-B5), pGA9(TM-VG), pGTM-B5, and pGTM-VG, were regulated by the
VACV A9L promoter. Antibodies. Anti-HA.11 mouse monoclonal antibody (MAb) and rabbit polyclonal antibody, which recognize the influenza hemagglutinin (HA) epitope, were purchased from Covance (Princeton, NJ). Rabbit anti-A17LC polyclonal antibody, which recognizes the C-terminal peptide of the A17 protein, was described elsewhere (37). Anti-B5 rat MAb 192C (24) was prepared from a hybridoma provided by J. Locker (European Molecular Biology Laboratories, Heidelberg, Germany). Rabbit anti-ß-COP polyclonal antibody and a mouse protein disulfide isomerase (PDI) MAb were purchased from BD Biosciences (San Jose, CA) and Stressgen Bioreagents (Ann Arbor, MI), respectively. Alexa 488-conjugated anti-mouse immunoglobulin G (IgG) and anti-rabbit IgG, Alexa 594-conjugated anti-mouse IgG, Alexa 568-conjugated anti-rat IgG, and 4',6'-diamidino-2-phenylindole (DAPI) were purchased from Invitrogen (Carlsbad, CA). Rhodamine red-conjugated anti-rabbit IgG antibody was purchased from Jackson Immunoresearch Laboratories (West Grove, PA).
Transfection and infection. Lipofectamine 2000 (Invitrogen) and DNA were diluted separately in Opti-MEM I medium (Invitrogen), mixed, incubated at room temperature for 20 min, and added to HeLa cells for 4 to 5 h at 37°C. The Lipofectamine-DNA medium was replaced with fresh Dulbecco's modified Eagle's medium from Quality Biologicals (Gaithersburg, MD), supplemented with 10% fetal bovine serum (FBS). For infection, virus stocks diluted in Dulbecco's modified Eagle's medium supplemented with 2.5% FBS were added to cell monolayers. After 1 h at 37°C, the virus inoculum was replaced with fresh medium containing 2.5% FBS.
Metabolic labeling and immunoprecipitation. HeLa cells were starved for 30 min at 37°C in methionine- and cysteine-free minimum essential medium without serum and then labeled with 100 to 200 µCi per ml of an [35S]methionine and [35S]cysteine mixture in the above medium for 30 to 120 min. Cells were harvested in cold phosphate-buffered saline (PBS) and lysed immediately in ice-cold radioimmunoprecipitation assay (RIPA) buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1% Triton X-100, 0.1% sodium dodecyl sulfate [SDS], 0.5% sodium deoxycholate). Lysates were incubated on ice for 10 min and centrifuged at 20,000 x g for 10 min at 4°C. Antibody was added to the supernatant and incubated overnight at 4°C. On the next day, protein G-agarose (Roche Applied Sciences, Indianapolis, IN) was added to each lysate and incubated as described above for 2 h. Agarose beads were pelleted at 20,000 x g for 30 s at 4°C and then washed four times with RIPA buffer and once with PBS. Lithium dodecyl sulfate sample buffer (Invitrogen) was added to agarose beads, and proteins were resolved in 12% bis-Tris polyacrylamide gels with 2-morpholinoethanesulfonic acid buffer (Invitrogen) and visualized by autoradiography. Films were scanned and images were compiled with Adobe (San Jose, CA) Photoshop, version 7.0.1, software.
Confocal microscopy. Cells were washed with PBS and fixed with cold 4% paraformaldehyde in PBS at room temperature for 20 min. Fixed cells were treated for 5 min with 0.2% Triton X-100 in PBS at room temperature or with 20 µg/ml of digitonin in PBS at 0°C. Permeabilized cells were incubated with primary antibodies diluted in 10% FBS for 1 h, followed by secondary antibody diluted in 10% FBS for 30 min, at room temperature. For double staining, cells were incubated sequentially with each primary and secondary antibody and washed at least three times with PBS after incubation with each antibody. Finally, cells were stained with DAPI diluted in PBS (5 to 10 µg/ml) for 10 min at room temperature. Stained cells were washed extensively with PBS, and coverslips were mounted in 20% glycerol. Fluorescence was examined with a 63x/1.4 oil immersion objective attached to a Leica inverted confocal microscope, and images were collected using Leica confocal SP2 software (Leica Microsystems, Heidelberg, Germany). Photos were processed using Adobe Photoshop, version 7.0.1, software.
Transmission electron microscopy of immunogold-labeled thawed cryosections. Infected cells were washed, fixed with 4% paraformaldehyde-0.05% glutaraldehyde, impregnated with 2.3 M sucrose, quick-frozen, and cut into 70-nm-thick sections. Cryosections were picked up on grids, thawed, washed free of sucrose, and stained with a mouse MAb to the HA epitope tag, followed by rabbit anti-mouse IgG from Cappel-ICN Pharmaceuticals (Aurora, OH) and then protein A conjugated to 10-nm gold spheres (University Medical Center Utrecht, Utrecht, The Netherlands). The sections were analyzed on a CM100 transmission electron microscope (FEI, Hillsboro, OR).
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NT), 44 to 68, comprising the entire
putative TM (A9
TM), 52 to 68, comprising part of the TM
(A9
tTM), and 69 to 108, comprising the CT (A9
CT)
(Fig. 1B). In addition,
the NT (NT-A9), TM (TM-A9), partial TM (tTM-A9), and CT (CT-A9) were
cloned into plasmids (Fig.
1B). Each modified gene
retained the natural A9 promoter so that mRNA synthesis would occur in
the virus factory by the VACV transcription system. In addition, the
encoded proteins had a C-terminal HA tag allowing detection by a MAb.
Cells were infected with a conditionally lethal mutant, vA9i
(38), in the absence of
inducer in order to prevent expression of the untagged A9 protein from
the viral genome, which could potentially compete with A9 expressed
from a transfected plasmid. Following infection and transfection, the
cells were labeled with [35S]methionine, and HA-tagged
proteins were captured with a MAb and analyzed by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis. The left panel of Fig.
1C shows negative controls
from uninfected cells and cells infected with wild-type VACV strain WR
without an HA epitope tag and a positive control from cells infected
with a recombinant VACV that expresses A9-HA. The middle and right
panels of Fig. 1C show
labeled proteins from cells infected with vA9i in the absence of
inducer and transfected with plasmids containing the constructs shown
in Fig. 1B. The proteins
all appeared to be stably synthesized, except for tTMA9, which was not
detected here (Fig. 1C)
and was demonstrated to be unstable in pulse-chase experiments (not
shown). The level of CT-A9 appeared to be reduced, presumably because
of the presence of only one methionine that could be 35S
labeled.
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FIG. 1. Construction
and expression of A9 with single or multiple deletions. (A)
Kyte-Doolittle hydrophilicity plot of A9. (B) Diagrams of A9
segments used to construct plasmids are shown, with plasmid names at
the left. Dashed lines represent deleted DNA. (C) Synthesis
of full-length and truncated A9 proteins. (Left panel) HeLa cells were
uninfected or infected with VACV (strain WR) or vA9-HA expressing
HA-tagged A9. (Middle and right panels) Cells were uninfected or
infected with vA9i and transfected with the indicated plasmids. Sixteen
hours after infection, the cells were labeled with
[35S]methionine-cysteine. Cleared lysates were
immunoprecipitated with anti-HA MAb, and the bound proteins were
resolved by SDS-polyacrylamide gel electrophoresis and visualized by
autoradiography. Some samples were run in separate gels and combined
for
presentation.
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FIG. 2. Effects
of deletions on intracellular location of A9. HeLa cells infected with
vA9i and transfected with a plasmid expressing full-length A9 or A9
with an N-terminal (A9 NT), TM (A9 TM), or C-terminal
(A9 CT) deletion were fixed and permeabilized 16 h
after infection. Cells were stained with mouse anti-HA MAb followed by
Alexa 488-conjugated anti-mouse IgG and then with rabbit anti-A17
polyclonal antibody followed by rhodamine red-conjugated anti-rabbit
IgG. Finally, cells were stained with DAPI and visualized by confocal
microscopy. Green, Alexa 488; red, rhodamine red; blue, DAPI. Bars, 10
µm.
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FIG. 3. Intracellular
locations of polypeptides containing the NT, TM, or CT of A9. HeLa
cells were infected with vA9i and transfected with a plasmid expressing
the HA epitope-tagged A9 NT (NT-A9; row 1), TM (TM-A9; rows 2 and 3),
or CT (CT-A9; row 4) from the natural A9 promoter or with a plasmid
expressing TM-A9 (row 5) or TM-A9 with the VSV G CT [TM-A9(CT-VG); row
6] from a cytomegalovirus promoter. After 16 h (rows 1 to 4)
or 24 h (rows 5 and 6), cells were fixed and permeabilized
with Triton X-100 (rows 1, 2, 4, 5, and 6) or digitonin (row 3). Cells
were stained with mouse anti-HA MAb followed by Alexa 488-conjugated
anti-mouse IgG (rows 1, 2, 3, 4, and 6) or with rabbit anti-HA
polyclonal antibody followed by Alexa 488-conjugated anti-rabbit IgG
(row 5). Cells were then stained with rabbit anti-A17 polyclonal
antibody followed by rhodamine red-conjugated anti-rabbit IgG (rows 1,
2, and 4), rat anti-B5 MAb followed by Alexa 568-conjugated anti-rat
IgG (row 3), mouse anti-PDI MAb followed by Alexa 594-conjugated
anti-mouse IgG (row 5), or rabbit anti-ß-COPI polyclonal
antibody followed by rhodamine red-conjugated anti-rabbit IgG (row 6).
Finally, nuclei and viral factories were stained with DAPI and
visualized by confocal microscopy. Green, Alexa 488; red, rhodamine
red, Alexa 568, and Alexa 594; blue, DAPI. Bars, 10
µm.
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Incorporation of truncated A9 polypeptides in IV and MV membranes.
Further experiments demonstrated that
truncated forms of A9 that retained the TM were incorporated into IV
and MV membranes within cytoplasmic factories. IVs are spherical
particles that appear on cross section as circular structures bounded
by a membrane and an external lattice, whose apparent thickness depends
on the level of the cross section relative to the equator
(33). We followed the
basic protocol used in the preceding sections for confocal microscopy
by infecting cells with vA9i in the absence of inducer and transfecting
them with a plasmid expressing A9, A9
NT, A9
TM,
A9
CT, or TM-A9. The cells were then cryosectioned, and the HA
epitope was detected by immunogold staining. In each case, except for
A9
TM, gold particles were found at the membrane near the
circumference of the IV (Fig.
4, rows 1 and 2). In the cells expressing A9
TM,
the gold grains were scattered and not associated with distinct
structures (not shown), as anticipated from confocal microscopy (Fig.
2, row 3). Despite the
association of the A9 protein lacking both the NT and CT with IV
membranes, the protein did not complement the production of infectious
virus particles, whereas A9 missing only the CT was able to do so
(12; M. Husain,
unpublished data). These data suggest that the N-terminal domain is
required for virus morphogenesis rather than membrane insertion and
that the CT is dispensable.
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FIG. 4. Immunogold
electron microscopy showing A9 or mutated A9 proteins incorporated into
IV and MV membranes. HeLa cells were infected with vA9i and transfected
with a plasmid encoding A9 or A9 missing the NT (A9 NT), the CT
(A9 CT), or both the NT
and CT (TM-A9) (rows 1 and 2) or infected with wild-type VACV strain
Western Reserve (WR) and transfected with A9 or TM-A9 (row 3). After
16 h (rows 1 and 2) or 24 h (row 3), cells were
fixed, cryosectioned, and stained with anti-HA MAb followed by rabbit
anti-mouse IgG and protein A conjugated to 10-nm gold spheres. IVs and
a crescent (CR) are shown in rows 1 and 2, and MVs are shown in row 3.
In the right panel of row 3, there is a crescent and an IV in the lower
left
section.
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Protein targeting to viral membranes does not depend on specific amino acid sequences. Since neither the NT nor CT of A9 is required for incorporation of the latter into the viral membrane, we considered that the TM might have a specific targeting sequence. Upon inspection of the corresponding regions of A9 orthologs in other poxviruses, however, we found that only Gly at position 62 of A9 was conserved. However, when this Gly residue was changed to Arg, the viral factory distribution of the mutated A9 protein was no different from that of wild-type A9 (data not shown), suggesting no absolute sequence requirement for targeting. The above result raised the possibility that any TM could enable viral membrane localization. To evaluate this hypothesis, the putative TM of A9 was replaced with the unrelated TM of the VACV B5 protein (Fig. 5A), which traffics to the trans-Golgi and EV membranes in infected cells, or with the TM domain of the VSV G protein (Fig. 5A), which traffics to Golgi and plasma membranes. In addition, we expressed these heterologous TMs with a C-terminal HA tag without any A9 coding sequence. Synthesis of each protein was detected by immunoprecipitation and SDS-polyacrylamide gel electrophoresis for cells infected with vA9i and transfected with the appropriate plasmid (Fig. 5B). We found by confocal microscopy that the A9 proteins containing the VACV B5 or VSV G TM instead of the A9 TM still colocalized with the VACV A17 protein in viral factories (Fig. 6, rows 1 and 2). Furthermore, the TMs of VACV B5 and VSV G lacking A9 sequences also colocalized with the A17 protein (Fig. 6, rows 3 and 4). Although a chimera consisting of the B5 TM appended to the VSV G luminal domain was previously reported to localize in Golgi membranes of uninfected cells (36), we did not observe any tendency of the B5 TM, alone or with A9 sequences, to proceed to the Golgi apparatus in the present constructs. The association of these TM proteins with IV and MV membranes was demonstrated by immunoelectron microscopy (Fig. 7). These data suggest that the apolar nature of the TM, rather than a specific amino acid sequence, suffices for targeting of a protein to viral membranes in factories.
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FIG. 5. Heterologous
TM constructs. (A) Partial amino acid sequences of VACV A9
and B5 and of VSV G, with their TMs shown in bold. (B)
Synthesis of B5 and VSV G TM polypeptides or of A9 with the B5 or VSV G
TM. HeLa cells were infected with vA9i and transfected with the
indicated plasmids. Sixteen hours after infection, cells were labeled
with [35S]methionine-cysteine. Cleared lysates were
immunoprecipitated with anti-HA MAb, and bound proteins were analyzed
by SDS-polyacrylamide gel electrophoresis and
autoradiography.
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FIG. 6. Localization
of polypeptides with heterologous TMs. HeLa cells were infected with
vA9i and transfected with plasmid A9(TM-B5) or A9(TM-VG), encoding A9
with the TM of B5 or VSV G, respectively, or with TM-B5 or TM-VG,
encoding the TM alone of B5 or VSV G, respectively. In each case, the
gene had an A9 promoter and the protein had a C-terminal HA epitope
tag. Cells were stained with mouse anti-HA MAb followed by Alexa
488-conjugated anti-mouse IgG. Cells were then stained with rabbit
anti-A17 polyclonal antibody followed by rhodamine red-conjugated
anti-rabbit IgG. Finally, nuclei and viral factories were stained with
DAPI and visualized with a confocal microscope. Green, Alexa 488; red,
rhodamine red; blue, DAPI. Bars, 10
µm.
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FIG. 7. Immunogold
electron microscopy of polypeptides with heterologous TMs. Infections
with vA9i and transfections were carried out as described in the legend
to Fig. 6, except for the
rightmost panel of row 2, in which cells were infected with VACV WR.
Immunoelectron microscopy was done as described in the legend to Fig.
4. The rightmost panel in
row 2 contains MVs; all other panels contain
IVs.
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The purpose
of the present study was to determine protein sequences required for
the localization of proteins in the nascent viral membrane. To our
surprise, neither the N- nor C-terminal domain of A9 was needed.
Furthermore, a heterologous TM from the VSV G protein or the VACV B5 EV
protein could replace the A9 TM, indicating either a complete lack of
sequence specificity or redundant signals in the N- and C-terminal
domains such that deletion of either one had no effect. The latter
possibility was ruled out by showing that the A9 TM or a heterologous
EV or nonpoxvirus TM was sufficient for viral membrane targeting. These
data imply a default pathway for the localization of TM proteins in the
viral membrane. However, such a model seemed at odds with the knowledge
that only specific viral proteins are directed to the IV membrane,
while others continue on the secretory pathway to the Golgi apparatus.
How can these seemingly disparate data be reconciled? One clue came
from our observation that replacing the CT of A9 with the corresponding
region of the VSV G protein, which contains COPII ER exit site binding
motifs (17,
18,
26), diverts ER-viral
membrane trafficking to the Golgi apparatus
(12). The addition of a
long luminal domain, which could lead to interactions with ER-resident
proteins, also interfered with IV membrane localization (Husain,
unpublished data), perhaps explaining the absence of glycosylated viral
proteins in virions. Indeed, most of the
20 MV membrane
proteins have a very short or even no luminal domain
(2). The A14 protein is
exceptional in that it has two membrane-spanning domains with N and C
termini in the lumen
(15). Although
glycosylated A14 can be detected in infected cells, it is not packaged
in virions, and the amount of the glycosylated protein is increased
under conditions that interfere with virus membrane formation
(15,
19). Glycosylation and
small amounts of an MV protein in the ERGIC may represent escape from
the biologically relevant ER-IV trafficking pathway. A model depicting
the synthesis of proteins without and with COPII-binding motifs and
destined for the IV and EV membranes, respectively, is shown in Fig.
8.
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FIG. 8. Sorting
of proteins to MV and EV membranes. Membrane proteins synthesized in
viral factory areas are translocated into the ER and sorted based on
the presence (blue dots) or absence (red dots) of COPII ER exit signals
in their CTs. ER patches containing unglycosylated proteins lacking ER
exit signals or other sequences that interact with ER-resident proteins
form vesicles or tubules that fuse with viral crescent membranes
containing an external protein scaffold (thick black line) to form IVs.
IVs lose the scaffold and undergo further morphogenesis to form MVs.
Proteins with ER exit signals traverse the exocytic pathway to the
trans-Golgi, where cisternal elements wrap the MVs in a double
membrane. The wrapped virions (WVs) move along microtubules and fuse
with the plasma membrane to release EVs with one additional membrane
relative to
MVs.
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There are intriguing similarities between the formation of peroxisome and poxvirus membranes. Peroxisomes are discrete organelles in the cytoplasm of eukaryotic cells. Their ability to regenerate in cells apparently lacking them led to the now disfavored hypothesis that peroxisomal membranes form de novo (32). The finding that peroxisome formation occurs in the presence of a constitutively inactive Sar1 inhibitor indicated that COPII trafficking was not involved (31), similar to the result obtained for VACV IV formation (11). Moreover, vesicles or tubules from the ER contribute to peroxisome formation even though ER proteins are excluded from these organelles (9, 34), as is the case with VACV. Microscopic studies indicated that a peroxisomal TM protein called Pex3 concentrates in foci in the ER and is joined by a farnesylated cytosolic protein called Pex19, both of which are necessary for peroxisome formation. Subsequently, many other proteins are recruited to the peroxisome via a conserved sequence (23), which has no parallel in VACV proteins. Nevertheless, whether related mechanisms underlie peroxisome and poxvirus membrane formation remains to be determined.
The intramural program of NIAID, NIH, supported this study.
Published
ahead of print on 27 December 2006. ![]()
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