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Journal of Virology, December 2007, p. 13385-13391, Vol. 81, No. 24
0022-538X/07/$08.00+0 doi:10.1128/JVI.01785-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Montana Biotechnology Center, The University of Montana, Missoula, Montana 59812
Received 14 August 2007/ Accepted 25 September 2007
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The arenaviruses are enveloped RNA viruses that encode ambisense expression of four viral proteins (8). The nucleoprotein (N) and RNA-dependent RNA polymerase (L) associate with the two single-strand genomic RNA segments to form the ribonucleoprotein core. Virion assembly occurs at the plasma membrane (45) and is promoted by the matrix protein (Z) (48, 59). Virus entry into the target cell is initiated by binding of the envelope glycoprotein (GP-C) to a cell surface receptor:
-dystroglycan in the Old World viruses (9, 34, 58) and transferrin receptor 1 in the New World hemorrhagic fever viruses (50). Upon binding, the virion particle is endocytosed (7), and fusion with cellular membrane is subsequently activated by acidic pH in the maturing endosome (11). As with other class I viral fusion proteins (12, 13, 28, 29, 56), this membrane fusion reaction is mediated by a series of conformational changes in GP-C that ultimately lead to formation of a stable six-helix bundle structure (18, 21, 63). Intervention strategies that target the steps in virus entry offer promise for effective antiviral therapeutics. Indeed, small-molecule arenavirus-specific entry inhibitors have recently been discovered (5).
GP-C is unique among class I envelope glycoproteins in that the mature complex retains its cleaved signal peptide as an essential element, together with the receptor-binding (G1) and transmembrane fusion (G2) subunits. The stable, 58-residue signal peptide (SSP) was initially identified as a component of the Old World arenavirus GP-C complex (16, 19, 35) and found to be essential for proteolytic maturation of the glycoprotein precursor in the Golgi body (1, 15, 35). Without SSP, the G1-G2 precursor is specifically retained in the endoplasmic reticulum (ER), in part through dibasic ER retrieval signals in the cytoplasmic domain (CTD) of G2 (1). This acts as a quality control mechanism to ensure that only the mature tripartite GP-C complex is transported to the cell surface for virion assembly. Unexpectedly, SSP incorporation in the GP-C complex also plays a crucial role in the activation of pH-dependent membrane fusion activity (65). Furthermore, the unusual interplay between the ectodomains of SSP and G2 in membrane fusion appears vulnerable to interference by the newly discovered small-molecule entry inhibitors (reference 5 and unpublished results). In this report, we provide biochemical and genetic evidence for a high-affinity zinc-binding domain (ZBD) in the CTD of G2 and discuss the implications of this novel structure for SSP association in GP-C and its membrane fusion activity.
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GP-C expression was detected by immunoprecipitation of metabolically labeled complexes (65, 66). Briefly, cells were metabolically labeled using 50 µCi/ml of 35S-ProMix (Amersham Pharmacia Biotech) for 12 to 16 h. Cultures were washed in physiological buffered saline and lysed using cold Tris-saline buffer (50 mM Tris-HCl and 150 mM NaCl at pH 7.5) containing 1% Triton X-100 nonionic detergent and protease inhibitors (1 µg/ml each of aprotinin, leupeptin, and pepstatin). The expressed glycoproteins were immunoprecipitated from cleared lysates using MAb BF11 and protein A-Sepharose (Sigma). Proteins were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) using NuPAGE 4 to 12% Bis-Tris gels (Invitrogen) and the recommended sample buffer containing reducing agent. In some cases, the glycoproteins are deglycosylated by treatment with peptide-N-glycosidase F (New England Biolabs) to facilitate resolution of the G1 and G2 subunits. Molecular size markers included 14C-methylated Rainbow proteins (Amersham Pharmacia Biotech). Radiolabeled proteins were visualized by phosphorimaging (Fuji FLA-3000G) and analyzed using ImageGauge software (Fuji).
Purification of chimeric MBP. The sequence corresponding to the entire CTD of G2 (encoding P445 to H485) was adapted by PCR and appended in frame at the C terminus of maltose binding protein (MBP) using the KpnI polylinker site in the plasmid pMAL-c2E (New England Biolabs), to generate pMBP-ZBD. Expression of the chimeric MBP-ZBD protein in Escherichia coli K-12 strain TB1 (New England Biolabs) was induced by the addition of isopropyl-ß-thiogalactopyranoside (IPTG) as recommended by New England Biolabs. Cell pellets were frozen overnight and subsequently lysed using Bugbuster protein extraction reagent (primary amine free; Novagen) in the presence of protease inhibitors (1 µg/ml each of aprotinin, leupeptin, and pepstatin). Cleared extracts were incubated with amylose resin (New England Biolabs) in buffer containing 20 mM HEPES (pH 6.8) and 200 mM NaCl for 2 h at 4°C with rocking. The resin was then packed into a column and washed extensively with this buffer. Bound MBP chimera was eluted by the addition of 10 mM maltose. The yield of purified protein was 2 to 3 mg per g of wet cells.
Protein characterization. Proteins were analyzed by SDS-PAGE and visualized using SYPRO Red protein stain (Molecular Probes). Molecular size markers included Mark12 standards (Invitrogen). Protein concentrations were determined by the Coomassie Plus assay (Pierce) and corresponded to those measured by optical density at 280 nm in 6 M GuHCl (14). Zinc content was determined using the 4-(2-pyridylaxo)resorcinol (Aldrich) reagent in 4 M GuHCl (30, 42).
Equilibrium binding studies.
Prior to use for zinc binding, the purified proteins were dialyzed into buffer containing 50 mM HEPES (pH 6.8) and 20 mM NaCl (HEPES-NaCl buffer) and incubated with an excess of tris(2-carboxyethyl)phosphine (TCEP; Pierce) for 20 min at room temperature in order to reduce any disulfide bonds that form on exposure to air and in the absence of zinc. TCEP does not bind metal ions and is thus uniquely suited for these studies (23, 32). We used 1 mM TCEP for 10 µM protein and 0.1 mM for 200 nM protein. These concentrations of TCEP were maintained throughout the subsequent binding experiment. Radioactive zinc (65Zn) was obtained from Brookhaven National Laboratory (U.S. Department of Energy) as a 2 mM solution of ZnCl2 in 0.1 N HCl. The specific activity is 2 Ci/mmol (batch Zn65-012506). Equilibrium dialysis studies were performed using a modified method in which unbound ligand is determined by centrifugal ultrafiltration (26, 37). In a typical study, 200 nM of MBP-ZBD protein is incubated at room temperature with 10 nM of neat 65Zn2+ in 5.0 ml of HEPES-NaCl buffer containing 0.1 mM TCEP. Equilibrium binding is attained within 60 min (not shown). At this time, the reaction mixture is sampled to determine the total amount of 65Zn2+, and the free 65Zn2+ is determined by ultrafiltration (Amicon Ultra-4; 10,000-molecular-weight cutoff). Based on the specific radioactivity of the reaction mixture (cpm/ml for the known total concentration of Zn2+), the concentration of free and bound zinc is determined. Samples were counted using a Captus multichannel analyzer (Capintec) and a single-well detector (2-ml capacity). The high-energy gamma emission of 65Zn (950 to 1,200 keV) was detected at
2.5% efficiency. Using this methodology, we were effectively limited to detecting zinc binding at concentrations of
10 nM Zn2+ (i.e.,
2,000 cpm per 2-ml sample).
Competitive metal ion binding studies. The specificity and selectivity of metal ion binding were determined in a 5-ml equilibrium binding reaction mixture containing 200 nM MBP-ZBD, 10 nM 65Zn2+, and a 10- to 10,000-fold excess of CdCl2, CoCl2, CuCl2, MgCl2, or cold ZnCl2. A 50% inhibitory concentration (IC50) for each metal ion was defined as that which competes for 50% of 65Zn2+ binding. Because of the excess of MBP-ZBD over 65Zn2+ in the reaction, the relative IC50 is reported as a ratio of the competitor IC50 compared to that of cold Zn2+.
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FIG. 1. The tripartite GP-C complex. A representation of the JUNV GP-C open reading frame is shown on top. Amino acids are numbered from the initiating methionine, and cysteine residues ( 1 and h 2) are marked. A schematic drawing of the tripartite GP-C complex is shown at the lower right. The model depicts the bitopic membrane topology of SSP in relation to the CTD of G2 (2). The myristoylation site (66) and fusion-critical Lys-33 residue (65) in SSP are indicated, as are the heptad-repeat regions in the G2 ectodomain (thicker lines). The N or C termini of the subunits are labeled. The drawing is not to scale.
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Zinc-binding activity of the G2 CTD. To characterize zinc binding, we appended the entire CTD sequence (P445 to H485) (Fig. 1) to the C terminus of MBP (New England Biolabs). The chimeric MBP-ZBD protein was expressed in E. coli and purified using amylose resin affinity chromatography (Fig. 2). No Zn2+ was added during the purification procedure, and the isolated protein was devoid of zinc (<0.03 mol per mol of protein), as determined by reaction with 4-(2-pyridylazo)resorcinol (42). We also generated a mutant chimera (MBP-noZBD) in which the conserved CTD cysteine and histidine residues were all replaced by amino acids that do not coordinate zinc ion (27). The three cysteines were changed to serine, a similarly sized side chain that differs only at the hydroxyl oxygen, whereas the three histidines were replaced by asparagine, another nitrogen-containing side chain. The MBP-noZBD protein was used to assess nonspecific zinc binding and the potential role of the cysteine-histidine sequence motif.
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FIG. 2. Purified MBP chimeras containing the CTD of G2. The purity of the chimeric proteins (500 ng each) was assessed using SDS-PAGE. Wild-type MBP-ZBD and the individual mutants are indicated. C467Stop contains a stop codon at position 467, and MBP-noZBD includes the three cysteine and three histidine mutations. The isoforms seen in the samples vary between analyses and likely reflect different conformational states of the protein. Numbers at right are molecular masses in kilodaltons.
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0.3 mol zinc per mol of protein (not shown). The substoichiometric amount of zinc binding may reflect oxidative damage to the cysteines.
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FIG. 3. Specific binding of zinc ion to MBP-ZBD. MBP-ZBD and MBP-noZBD (10 µM, left, and 400 nM, right) were incubated with 100 µM and 10 nM 65Zn2+, respectively, as described in the text. Free 65Zn2+ was determined by ultrafiltration. The counts per minute (cpm) of free 65Zn2+ in the ultrafiltrate (1-ml or 2-ml sample, respectively) are plotted. The total radioactivity in the binding reaction is used as the full-scale value in each graph (10,000 and 2,000 cpm, respectively) to demonstrate the relative proportion of unbound zinc.
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The ability of MBP-ZBD to bind other divalent transition-metal ions was determined by equilibrium dialysis using 10 nM 65Zn2+ and an excess of Cd2+, Co2+, or Cu2+. The concentration of competitor ion required to inhibit Zn2+ binding by 50% (IC50) was used to assess the relative binding affinity. The selectivity of binding to MBP-ZBD was determined as: Zn2+ > Cu2+ > Cd2+ >> Co2+. This order of preference conforms to that of well-characterized zinc finger proteins (3, 36). The respective IC50s for Cd2+, Co2+, and Cu2+ were 10-, 450-, and 5-fold that of Zn2+. Mg2+ did not compete for binding at concentrations up to 100 µM, demonstrating the requirement for a transition-metal ion and the specificity of zinc binding.
Amino acid requirements for zinc-binding activity. To determine the role of specific cysteine and histidine side chains in zinc binding, we introduced the respective serine and asparagine mutations individually into MBP-ZBD. The mutant proteins were affinity purified (Fig. 2), and 400 nM of each was used to determine binding with 10 nM 65Zn2+ (Fig. 4, top). To enhance the distinctions among the mutants, the assay was also performed using 200 nM protein (Fig. 4, bottom). Under these conditions, zinc binding was reduced markedly by the C455S mutation and to a lesser extent by H447N and H449N (Fig. 4). These results extrapolate to dissociation constants of 12 nM for C455S and 1 to 2 nM for H447N and H449. We infer that these three membrane-proximal residues (H447, H449, and C455) are required for high-affinity binding of Zn2+ by MBP-ZBD. Each is capable of coordinating zinc ion or may indirectly contribute to formation of the properly folded zinc-binding center. Interestingly, mutations in the three distal residues in the array (H459N, C467S, and C469S) had little or no detectable effect on zinc binding in this assay.
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FIG. 4. Zinc binding by MBP-ZBD mutants. Wild-type and mutant MBP-ZBD proteins (400 nM in top panel and 200 nM in bottom panel) were incubated with 10 nM 65Zn2+ as described in the text. The cpm of free Zn2+ are plotted, and the full scale (2,000 cpm) represents 10 nM Zn2+. The results shown here are representative of six independent studies.
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Conserved cysteines and histidines are required for SSP incorporation in GP-C. The functional significance of zinc binding and the conserved residues in GP-C was determined by individually replacing each cysteine and histidine residue in the CTD with serine or asparagine, respectively. These mutations were introduced into a GP-C construct (CD4sp-GPC) that utilizes the conventional signal peptide of human CD4 for expression of the G1-G2 precursor protein (1). Coexpression of wild-type CD4sp-GPC in trans with an SSP polypeptide has been shown to reconstitute the native GP-C complex (1, 15, 64). This trans-complementation method was chosen to obviate experimental concerns regarding possible effects of the mutations on signal peptidase cleavage of full-length GP-C. The GP-C complexes were metabolically labeled with 35S-ProMix (Amersham Pharmacia Biotech) and immunoprecipitated using G1-specific MAb BF11 (53). SDS-PAGE analysis of the wild-type GP-C complex reveals the association with SSP (Fig. 5, top) and the proteolytic maturation of the G1-G2 precursor (Fig. 5, bottom). In contrast to the wild-type CD4sp-GPC, none of the single cysteine and histidine mutants was able to associate with SSP in trans (Fig. 5, top). Proteolytic maturation of the G1-G2 precursor was also absent in the mutants (Fig. 5, bottom), presumably reflecting the inability of the precursor to transit through the Golgi body in the absence of SSP (1). As anticipated, the mutants were unable to support membrane fusion (Fig. 6). Thus, CTD residues that are dispensable for high-affinity zinc binding (H459, C467, and C469) as well as those that are required (H447, H449, and C455) are each essential for SSP incorporation in the GP-C complex.
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FIG. 5. SSP association in GP-C complexes bearing mutations in the G2 cysteine-histidine array. Vero cells were transfected to express wild-type and mutant CD4sp-GPC in trans with wild-type SSP (+SSP) (65). Metabolically labeled complexes were immunoprecipitated using G1-specific MAb BF11 (53) and separated on NuPAGE (Invitrogen) 4 to 12% Bis-Tris gels under denaturing and reducing conditions (top panel). The image has been darkened in order to visualize SSP. The mature G1 and G2 subunits are not as well resolved as the glycoproteins and are rendered distinct on deglycosylation by peptide-N-glycosidase F (lower panel). The G1-G2 precursor and GP-C subunits are labeled, as well as the 14C-labeled protein markers (in kilodaltons) (Amersham Biosciences).
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FIG. 6. Membrane fusion activity of mutant GP-C complexes. pH-dependent cell-cell fusion by the trans-complemented GP-C complex was initiated by a pulse of medium adjusted to pH 5.0 and detected using the recombinant vaccinia virus-based ß-galactosidase reporter assay (46) as previously described (65, 66). ß-Galactosidase expression was quantitated using the chemiluminescent substrate GalactoLite Plus (Tropix), and the percentage of fusion relative to the wild-type CD4sp-GPC complex (CD4sp + SSP) is indicated. Error bars represent ±1 standard deviation.
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The three distal residues in the array (H459, C467, and C469) are not required for high-affinity zinc binding. Nonetheless, all six residues in the array are essential for SSP incorporation in the mature GP-C complex; mutations at any of these positions prevent association and render the envelope glycoprotein defective. This shared phenotype may of course arise through a variety of mutational effects. Interestingly, however, SSP association in GP-C is also abolished by mutation at an absolutely conserved cysteine residue (C57) in the C-terminal CTD of SSP (54, 64). Based on the bitopic membrane topology of SSP in which both N and C termini reside in the cytosol (2) (Fig. 1), this C-terminal region must be translocated from the ER lumen following signal peptidase cleavage. With the exception of the inviolable C57, other residues in this short region (R55SCT58 in JUNV) are not conserved among the arenaviruses, and each can be mutated without effect on SSP association (64). In light of the shared phenotype in mutants at C57 in SSP and within the cysteine-histidine array of G2, we speculate that H459, C467, and C469 may participate together with C57 in forming an intersubunit zinc-binding center, possibly in conjunction with the membrane-proximal zinc center. Although translocation of C57 into the cytosol is independent of G2 (2), formation of a zinc finger motif bridging SSP and G2 may be needed to stabilize SSP incorporation in the GP-C complex.
We have shown that peptide fragments including the membrane-proximal H447, H449, and C455 residues can bind Zn2+ with extremely high affinity and that single-amino-acid substitutions at these positions substantially reduce affinity to a range that is consistent with the effects of single coordination-site mutations in known zinc fingers (6, 55). The residual nanomolar affinity observed in these triply ligated mutants, however, might suggest that zinc binding by the three distal cysteine and histidine residues would also be detectable. The lack of binding in our studies may simply reflect the inability of these residues to coordinate zinc or the oxidative lability of the cysteines in the recombinant peptide model in MBP-ZBD. Alternatively, SSP may be important for zinc binding and formation of the proposed intersubunit zinc center. Because the C-terminal region of SSP is short and otherwise permissive to amino acid changes (64), it appears that proper placement of the coordinating C57 side chain is promoted by additional sequence elements that lie in the N-terminal region of SSP (54) or the membrane-spanning domains of SSP and G2. Indeed, mutations in the second transmembrane domain of SSP that prevent SSP association (2) might do so by perturbing the positioning of C57 and thereby preventing formation of the intersubunit zinc center. Structural studies are needed in order to further assess the potential for zinc binding by H459, C467, and C469 and the proposed participation of C57 in SSP.
We should emphasize that specific interactions between SSP and G2 are required for the membrane fusion activity of GP-C. Recent studies have shown that mutations that diminish positive charge at K33 in the ectodomain loop of SSP increase the H+ concentration needed for the activation of membrane fusion (65). These results suggest that that K33 interacts with titratable residues in the ectodomain of G2 to modulate fusion activation at acidic pH (65). Formation of a zinc-finger-like structure on the cytosolic face of GP-C may be important in positioning K33 and the ectodomain loop of SSP for this role. In this regard, the localized interaction between SSP and the G2 ectodomain in membrane fusion may provide a tractable model for studying pH-induced activation of viral fusion and the structural determinants on either side of the membrane that control this fundamental function of virus envelope glycoproteins.
In proposing an intersubunit ZBD, we suggest a molecular basis for the retention and positioning of SSP in the GP-C complex for its role in pH-dependent membrane fusion. With this report, the three structural proteins of the arenaviruses are now known to contain a ZBD (52, 61). Biophysical and structural studies of the unusual ZBD in GP-C are needed to define the zinc centers and characterize the requirements for folding. A detailed understanding of the structure and function of the unique SSP subunit in GP-C may suggest novel opportunities for therapeutic intervention in arenavirus infection and hemorrhagic fevers.
This work was supported by NIH research grant AI059355 and a subaward from the Rocky Mountain Regional Center of Excellence for Biodefense and Emerging Infectious Diseases (NIH grant U54 AI065357).
Published ahead of print on 10 October 2007. ![]()
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