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Journal of Virology, December 2007, p. 13291-13298, Vol. 81, No. 24
0022-538X/07/$08.00+0 doi:10.1128/JVI.01580-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

and
Stanley Perlman1,2*
Program in Immunology,1 Department of Microbiology, University of Iowa; Iowa City, Iowa 522422
Received 19 July 2007/ Accepted 25 September 2007
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Mice infected with the neurotropic coronavirus, mouse hepatitis virus strain JHM (JHMV), serve as a useful surrogate for analyzing many aspects of CTL escape in humans. In this instance, suckling C57BL/6 (B6; H-2b MHC haplotype) mice are infected with JHMV and nursed by dams previously immunized to the virus. Mice are protected from acute encephalitis but later develop hindlimb paralysis/paresis (HLP) and chronic demyelination. Virus can be isolated from the brains and spinal cords of infected mice and, in nearly all instances, is mutated in the immunodominant CTL epitope recognized in these mice. BALB/c mice (H-2d MHC haplotype) do not show the same phenomena; suckling mice nursed by JHMV-immune dams do not develop chronic disease or show evidence of CTL escape. The immunodominant CD8 T-cell response in H-2b mice is directed at a CD8 T-cell epitope that is in a region of the spike (S) glycoprotein (residues 510 to 518 [CSLWNGPHL]; epitope S510) that tolerates mutation while the Ld-restricted epitope recognized in BALB/c mice is located in a conserved region of the nucleocapsid (N) protein (residues 318 to 326 [APTAGAFFF]; epitope N318). However, JHMV infection of suckling BALB/b (H-2b) mice, differing from BALB/c only at the MHC locus, also did not result in chronic demyelination or CTL escape (10).
We have demonstrated that the presence of anti-JHMV antibodies correlates with protection from CTL escape in these infected BALB/b and BALB/c mice. Anti-JHMV antibody-secreting cells (ASC) can be detected in significantly greater numbers in the infected BALB/c and BALB/b central nervous system (CNS) but not the B6 CNS, suggesting that a potent antivirus antibody response at the site of infection could prevent CTL escape. However, BALB and B6 mice differ in many aspects besides this difference in numbers of ASC in the CNS, such as bias towards Th1 or Th2 cellular immune responses, unique patterns of cytokine production, and differential susceptibility to microbial infection (40). Thus, the relationship between anti-JHMV ASC recruitment to the CNS and protection from CTL escape cannot be attributed to this observation alone.
Here, we took a genetic approach to prove more directly that the antibody response, not differences in genetic background between BALB and B6 mice, was critical for protection against CTL escape. We engineered BALB/b mice that contained a genetic deletion at the JH locus and therefore were unable to mount an anti-JHMV antibody response. In these mice, which differ from BALB/b mice only in their lack of a B-cell response, chronic demyelination and CTL escape were detected in all animals, indicating that CTL escape is facilitated by a suboptimal or absent anti-JHMV antibody response.
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Mice.
C57BL/6 mice were purchased from The National Cancer Institute, Frederick, MD, and BALB/b mice were purchased from The Jackson Laboratory, Bar Harbor, ME. BALB/c JHD mice were purchased from Taconic (Hudson, NY). To generate BALB/b JHD mice, the two mouse strains were interbred and genomic DNA from tails of F1 mice was screened for the disrupted JH locus by PCR, while the expression of H-2Db and H-2Dd on peripheral blood leukocytes was assessed by flow cytometry. Primers (5'
3') amplifying the native JH locus were the forward primer CCCCACCATCACAGACCTTT and reverse primer ACCTTGCACCAGTCAGAGAC, and those amplifying the disrupted JH locus were the forward primer AAGTAGCCGGATCAAGCGTAT and reverse primer GATGGATTGCACGCAGGTTCT. Antibodies used to screen for expression of MHC class I were fluorescein isothiocyanate (FITC)-conjugated anti-H-2Db (monoclonal antibody [MAb] KH95) and phycoerythrin (PE)-conjugated anti-H-2Dd (MAb 34-2-12), both obtained from BD Pharmingen (San Diego, CA). All mice were housed in accordance with guidelines and protocols established by the University of Iowa Animal Care Unit.
Infection of mice. Dams were passively immunized 7 days after delivery via intraperitoneal injection of a cocktail of anti-JHMV neutralizing MAbs (5A13.5 and 5B19.2 [gifts from M. Buchmeier, The Scripps Research Institute, La Jolla, CA]). At 10 days of age, suckling mice were intranasally infected with 4 x 104 PFU of JHMV.
Intracellular cytokine staining.
Mononuclear cells were harvested from the brains of suckling mice 7 or 10 days postinfection (p.i.). Peptides corresponding to immunodominant CD8 (S510) or CD4 (epitope M134, spanning residues 134 to 147 of the transmembrane [M] protein) T-cell epitopes were used at final concentrations of 1 and 5 µM, respectively. Cells were incubated with peptide and antigen-presenting cells (EL-4 for CD8 and CHB3 for CD4) for 5.5 h at 37°C. Cells were washed, incubated in blocking buffer containing anti-Fc
RIII/II MAB (clone 2.4G2) and subsequently stained with FITC-conjugated anti-CD8
(Ly2; clone 53-6.7) or FITC-anti-CD4 (L3T4; clone GK1.5) MAb on ice for 1 h. After washing, cells were permeabilized, fixed, and stained intracellularly with PE-conjugated anti-gamma interferon (IFN-
) MAb on ice for 1 h. Cells were analyzed using a FACScan flow cytometer (BD Biosciences, Mountain View, CA). Data sets were analyzed using FlowJo software (Tree Star, Inc, Ashland, OR). All antibodies and reagents were purchased from BD Pharmingen (San Diego, CA).
CD107a/CD107b degranulation assay.
Mononuclear cells were harvested from the brains of BALB/b and BALB/b JHD suckling mice 7 days p.i. and incubated for 5.5 h in the presence of monensin, S510 peptide, antigen-presenting (EL-4) cells, and FITC-anti-CD107a and FITC-anti-CD107b or isotype control antibodies (gifts from Steven Varga, University of Iowa). Cells were then surface stained with PE-Cy7-anti-CD8
followed by intracellular staining with PE-anti-IFN-
. Relative CD107a/b expression was examined after gating on CD8+ IFN-
+ cells.
In vitro cytotoxicity assay.
Mononuclear cells (effectors) were harvested from the brains of BALB/b and BALB/b JHD suckling mice 7 days p.i. and analyzed in direct ex vivo cytotoxicity assays as previously described (6). Briefly, effector cells were cocultured for 4 h with 51Cr-labeled, S510 peptide-pulsed EL-4 cells (targets) at the indicated ratios. To determine actual effector input, aliquots of mononuclear cells were stained with FITC-anti-CD8
and PE-conjugated Db/S510 tetramers (NIH tetramer facility). The percent specific release was defined as 100 x [(experimental release – spontaneous release)/(total release for detergent treated – spontaneous release)]. Maximum spontaneous release was <10% in all experiments.
ELIspot assays. Determination of numbers of ASC was performed essentially as described previously (10). Briefly, total mononuclear cells were isolated from the brains of infected suckling mice at 7, 10, and 14 days p.i. Serial dilutions of cells from each animal were incubated for 4 h on Multiscreen plates (Millipore, Bedford, MA) that had been previously coated with whole JHMV virus, to detect virus-specific ASC, or coated with rabbit anti-mouse IgG plus IgM (anti-IgG/IgM) antibody (Jackson ImmunoResearch, West Grove, PA). Virus-specific and total antibodies were detected with biotinylated donkey anti-mouse IgG/IgM antibody (Jackson ImmunoResearch, West Grove, PA). Wells were subsequently incubated with horseradish peroxidase-conjugated streptavidin and washed, and spots were developed with diaminobenzidine (Sigma, St. Louis, MO). Spots were counted by direct visualization with a stereomicroscope.
Virus sequencing.
Total RNA was isolated from the brains of chronically infected mice and reverse transcribed to cDNA as previously described (31). Using the resulting cDNA as template, a 1,055-bp region of the spike glycoprotein encompassing epitope S510 was amplified by PCR. The primers (5'
3') used were forward primer AACCCCTCGTCTTGGAATAGGAGGTATGG and reverse primer CCTACGGATTGAACGCTATCATTGACTAAC. PCR products were sequenced directly by the University of Iowa DNA Core. Results were analyzed and recorded with Sequencher software (Gene Codes, Ann Arbor, MI).
Statistical analyses. Significance was determined using a nonpaired, two-sided Student's t test or chi-square test, where indicated.
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FIG. 1. Kinetics of ASC recruitment to the CNS of antibody-protected, JHMV-infected suckling B6 and BALB/b mice. B6 and BALB/b dams were passively immunized with anti-JHMV neutralizing antibody cocktail at 7 days postpartum as described in Materials and Methods. Three days later, suckling mice were infected with 4 x 104 PFU of JHMV. At 7 (A), 10 (B), and 14 (C) days p.i., mononuclear cells were harvested from the brains of suckling mice and the absolute numbers of virus-specific (left bars) and total IgG-plus-IgM (right bars) ASC were determined as described in Materials and Methods. Data represent the mean ± standard error for six to eight B6 and BALB/b suckling mice derived from at least two independent litters at each time point. Nonpaired, two-sided t tests were used for statistical analyses. ND, none detected.
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FIG. 2. Survival of virus-induced acute encephalitis and virus titers in antibody-protected, JHMV-infected suckling BALB/b and BALB/b JHD mice. (A) Survival analysis of suckling mice nursed by dams that were passively immunized with graded doses of neutralizing antibody cocktail. BALB/b and BALB/b JHD dams were passively immunized at day 7 postpartum; suckling mice were infected with 4 x 104 PFU of JHMV 3 days later (day 10 postnatal) and monitored for survival (days 3 to 18 p.i.). Results for each graded dose of neutralizing antibody are derived from between 3 and 13 litters from multiple independent BALB/b and BALB/b JHD dams. Numbers in parentheses indicate total numbers of pups infected in each group. (B) BALB/b and BALB/b JHD suckling mice were infected with 4 x 104 PFU of JHMV. At the indicated day p.i., brains were aseptically harvested, homogenized in sterile PBS, and clarified by centrifugation. Supernatants were collected, and the titer of infectious virus was determined on HeLa-MHVR cells (HeLa cells stably transfected with mouse hepatitis virus [MHV] receptor) as described previously (29). Symbols on the graph represent individual mice assayed from multiple independent litters at each time point. The limit of detection (LOD) for the assay is 80 PFU/brain. Nonpaired, two-sided t tests were used for statistical analyses. NS, not statistically significant.
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TABLE 1. Incidence of clinical diseasea and development of CTL escapeb in BALB/b and BALB/b JHD mice
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Sustained virus-specific CTL responses in BALB/b JHD mice.
Since the sustained virus burden described above for BALB/b JHD mice could result from impaired cell-mediated responses, we next determined whether CTL responses were normal in maternal antibody-protected BALB/b JHD mice. Of note, CTL responses have been reported to be normal in JHD mice infected with an attenuated strain of JHMV (36). For this purpose, we examined the magnitude of antiviral T-cell responses to immunodominant JHMV-specific CD8 and CD4 T-cell epitopes on days 7 and 10 p.i. as described in Materials and Methods. Both BALB/b and BALB/b JHD suckling mice exhibited similar frequencies and numbers of virus-specific CD8 and CD4 T cells at day 7 p.i. (Fig. 3A to F). However, by day 10 p.i., BALB/b JHD mice exhibited a >2-fold increase in the total number of inflammatory mononuclear cells in the JHMV-infected CNS (data not shown), which translated into a 2.5-fold increase in absolute numbers of total and epitope S510-specific CD8 cells compared to BALB/b mice (Fig. 3D and E). Although IFN-
production by virus-specific CD8 T cells correlated well with Db/S510 tetramer staining, we further evaluated the functional capacity of CD8 T cells from BALB/b and BALB/b JHD mice. First, we examined epitope-specific CD8 T cells for their ability to translocate CD107a and CD107b to the cell surface, as a marker for degranulation (4). We found no difference in the proportions of CD107a/b+ epitope S510-specific CD8 T cells between BALB/b and BALB/b JHD mice 7 days p.i. (Fig. 3G; BALB/b, 79% ± 2.2%, and BALB/b JHD, 77% ± 3.2% [P = 0.598]). As an additional measure of CD8 T-cell function, we performed direct ex vivo cytotoxicity assays. CTLs from the B-cell-deficient BALB JHD mice were as least as cytolytic as those harvested from BALB/b mice (Fig. 3H).
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FIG. 3. Antiviral T-cell responses in antibody-protected, JHMV-infected BALB/b and BALB/b JHD suckling mice. (A) Flow cytometric dot plots demonstrating the frequency of virus-specific T cells in the CNS of antibody-protected, JHMV-infected BALB/b and BALB/b JHD suckling mice at 7 days p.i. Numbers indicate the fraction of CD8+ T cells specific for the immunodominant S510 epitope (left panels) or CD4+ T cells specific for the immunodominant M134 epitope (right panels). Aliquots of cells were also cultured with an irrelevant peptide (OVA257-264) for CD8 T cells, or no peptide for CD4 T cells, to establish background IFN- staining. Summaries of the frequencies (B and C) and absolute numbers (D and E) of total and virus-specific CD8+ T cells on days 7 and 10 p.i. are shown. Data represent the mean ± standard error for four to eight BALB/b and BALB/b JHD suckling mice at each time point. Nonpaired, two-sided t tests were used for statistical analyses. NS, not statistically significant. (F) Frequency and number of Db/S510 tetramer-positive CD8 T cells detected in BALB/b and BALB/b JHD mice 7 days p.i. Four mice per strain were used in these analyses. (G) CD107a and CD107b surface expression by activated, epitope-specific CD8 T cells from BALB/b and BALB/b JHD mice. Shown are histograms representing the proportion of CD8+ IFN- + T cells expressing surface CD107a/b. Shaded plots represent staining by isotype control antibodies. Data are representative of analyses performed on four mice from each strain. (H) CNS-derived mononuclear cells were harvested from JHMV-infected suckling BALB/b and BALB/b JHD mice 7 days p.i. Ex vivo cytolytic activity was assayed at the indicated effector-to-target cell (E:T) ratios using EL-4 target cells coated with 1 µM of S510 peptide and calculated as described in Materials and Methods. E:T ratios are displayed as either total populations or percentage of epitope S510-specific cells as determined by Db/S510 tetramer staining. Four mice per strain were used in these analyses.
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BALB/b JHD mice uniformly develop clinical disease and harbor CTL escape variant virus.
To determine whether the frequency of CTL escape at epitope S510 was increased in the absence of an endogenous anti-JHMV antibody response, we next examined the incidence of clinical disease and assayed for the presence of CTL escape variant viruses in BALB/b and BALB/b JHD suckling mice that were equivalently protected from acute encephalitis. Although similar numbers of suckling BALB/b and BALB/b JHD mice survived the acute infection (Fig. 2A), only 5.7% (2/35) of surviving BALB/b mice developed HLP between days 18 and 60 p.i. (Fig. 4 and Table 1). In marked contrast, 100% of BALB/b JHD mice developed clinical disease (Table 1;
2 = 51.25 and P < 0.001 for development of HLP in BALB/b versus BALB/b JHD mice). Moreover, BALB/b JHD mice developed clinical disease sooner than BALB/b mice (median time to HLP was 30 days for JHD versus 54 days for wild-type mice). In line with studies of B6 mice (10, 21, 31, 32), virus mutated in epitope S510 was detected in each BALB/b and BALB/b JHD mouse that developed clinical disease. Among all mice surviving the acute infection, the incidence of CTL escape was significantly greater in BALB/b JHD mice than in BALB/b mice (
2 = 32.44; P < 0.001). Of note, all epitope S510 variant sequences detected in this study (Table 2) have been shown to abrogate or diminish recognition by S510-specific CTL (30).
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FIG. 4. Prevalence of clinical disease and development of CTL escape in BALB/b and BALB/b JHD mice that survive acute infection. Thirty-five BALB/b and 24 BALB/b JHD survivors of acute encephalitis were monitored for clinical signs of HLP. Total RNA from brains and spinal cords was harvested from symptomatic mice at the time of disease onset and asymptomatic mice at day 60 p.i. and analyzed for the presence of mutations in epitope S510. Bars represent the proportions of wild-type BALB/b and B-cell-deficient BALB/b JHD mice that were symptomatic (HLP) or asymptomatic. Shaded bars and numbers in parentheses indicate the proportion of mice within each group that harbored CTL escape variant viruses. 2 = 51.35 and P < 0.001 for incidence of clinical disease in BALB/b versus BALB/b JHD mice. 2 = 32.44 and P < 0.001 for prevalence of CTL escape detected in BALB/b versus BALB/b JHD mice (pooled symptomatic and asymptomatic mice). NA, not applicable.
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TABLE 2. Epitope S510 mutations detected in antibody-protected, JHMV-infected BALB/b and BALB/b JHD mice
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In the present study, we demonstrate directly the key role that antiviral antibodies have in suppressing replication and contributing to clearance of infectious virus, thus minimizing the opportunity for selection of CTL escape variant viruses. In the absence of anti-JHMV antibodies, virus clearance is mediated primarily by CD8 T cells; consistent with this, anti-JHMV CTL responses are sustained in infected BALB/b JHD mice, while they diminish in BALB/b mice (Fig. 3D and E). In the absence of an anti-JHMV antibody response, CTL escape at epitope S510 is detected in all mice (Tables 1 and 2 and Fig. 4). This high rate of CTL escape is facilitated by the location of epitope S510 in a region of the S glycoprotein that tolerates mutations and deletions; mutations in CD8 T-cell epitopes are not selected if they impair virus viability. In HIV-infected humans and SIV-infected macaques, some CTL mutations attenuate the virus and their selection requires coevolution with a second compensatory mutation (13, 33), whereas others are selected only at late stages of the disease process when the controlling immune response is impaired (2, 14). However, the epitope S510 variants selected in vivo are as fit as wild-type virus when assayed in tissue culture cells or in mice (unpublished data).
Dandekar et al. (10) and this study show that the most striking differences between infected BALB and B6 mice are in the numbers of anti-JHMV ASC at the site of virus replication (the CNS for JHMV), with greater numbers of cells present in both BALB/b and BALB/c mice. In the study by Dandekar et al., no maternal antibody-protected suckling BALB/b mice developed clinical disease or evidence of CTL escape. In that study, 100% of suckling BALB/b mice survived the acute phase of infection, suggesting transmission of an optimal or supraoptimal level of protective maternal antibody. This likely resulted in a lower virus burden prior to the development of an endogenous anti-JHMV antibody response, thereby diminishing the likelihood of CTL escape. In the present study, we skewed our experimental system towards establishment of high virus burdens in BALB/b suckling mice by titrating a suboptimal dose of neutralizing antibody administered to nursing BALB/b dams. In this instance,
50% of suckling mice survived acute JHMV infection, yet only 5.7% (2/35) of the survivors developed clinical disease associated with CTL escape (Fig. 2A and 4 and Table 1). Thus, even in a setting where mice are suboptimally protected, the emergence of a rapid and effective endogenous antibody response suppresses virus replication and minimizes CTL escape. Supporting this conclusion, when we titrated a dose of maternally derived antibody to BALB/b JHD mice that resulted in equivalent protection from acute disease, 100% (24/24) developed clinical disease and subsequent CTL escape (Fig. 4 and Table 1).
CTL escape occurs in the context of CD8 T-cell epitopes, such as epitope S510, that elicit CTL responses of high functional avidity (21, 25, 26). While some B-cell-deficient mice, such as µMT mice, have abnormalities in their T-cell responses (3), anti-JHMV CD8 T-cell responses are normal in JHMV-infected JHD mice, when measured by cytokine expression (Fig. 3) or by tetramer S510 staining and cytolytic activity (36). Furthermore, the selection of CTL escape viruses in all infected BALB/b JHD mice further shows the efficacy of the CD8 T-cell response; an impaired response would not exert sufficient immune pressure to facilitate their selection. Indeed, studies suggest that CTL escape most commonly occurs in the presence of a CTL response exhibiting high selective pressure (15). Others have reported decreased CD8 T-cell diversity in JHD mice (1, 17), but in those studies, no differences in CD8 T-cell function were observed. Of note, the epitope S510-specific CTL response is polyclonal but is functionally monospecific, since recognition is diminished or abrogated by single-amino-acid changes in TCR contact residues (30). Thus, the extent of TCR diversity, even if less in JHD mice, is unlikely to affect our results because a polyclonal S510-specific CTL response in B6 mice is unable to prevent the selective outgrowth of CTL escape variant viruses.
Antiviral antibody responses are likely to limit the selective outgrowth of CTL escape variant viruses during both acute and chronic stages in the infection (Fig. 5). First, efficient antiviral antibody responses during the acute phase lessen the immune pressure exerted by CTL by limiting replication, persistence, and spread. CTL escape variants are often detected in humans and chimpanzees infected with HCV, HIV, or SIV (9, 12, 37, 42, 45), infections that induce weak or delayed neutralizing antibody responses (7, 8, 16, 38). Similarly, kinetics of virus clearance are slower in JHMV-infected BALB/b JHD mice than in BALB/b mice (Fig. 2B), supporting a role for antiviral antibody in the initial stage of the disease. Second, a robust antiviral neutralizing antibody response prevents high-level replication of CTL escape variants, once they are selected in the persistently infected host. This is illustrated in our study by the poorly controlled growth of CTL escape variants in JHMV-infected BALB/b JHD mice (Fig. 4 and Tables 1 and 2). In HIV-infected patients, a diminished CD4 T-cell response has the same effect at late stages of disease and facilitates the outgrowth of CTL escape viruses (reviewed in reference 23).
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FIG. 5. Overview of the mechanistic correlates of CTL escape. T-bars and arrows represent factors that counter or contribute to CTL escape, respectively. High-avidity CTL responses are critically important for virus clearance but also contribute to the selection of CTL escape variant viruses when only one or a few immunodominant epitopes are targeted. Potent antiviral antibody responses, in combination with high-avidity CTL responses, decrease the likelihood of CTL escape by limiting virus replication and/or persistence. In addition, antiviral antibody responses may also directly limit the spread of CTL escape variant viruses that may arise in vivo. When antiviral antibody responses are suboptimal or absent, the high-avidity CTL response may not effectively control virus replication or limit persistence. In this instance, the adaptive immune response that is focused solely on immunodominant CTL epitopes may more readily select for CTL escape variant viruses. Additional factors that influence the selection and emergence of CTL escape variant viruses include de novo CTL responses, which may suppress the replication of viruses encoding variant epitopes, as well as altered virus fitness, which may limit the replicative capacity, tropism, or spread of CTL escape variant viruses.
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We thank Vladimir Badovinac and Jason Netland for critically reviewing the manuscript.
Published ahead of print on 3 October 2007. ![]()
Present address: Department of Internal Medicine, University of Washington, Seattle, WA 98195. ![]()
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