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Journal of Virology, November 2007, p. 12375-12381, Vol. 81, No. 22
0022-538X/07/$08.00+0 doi:10.1128/JVI.01695-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Departments of Pathology,1 Internal Medicine,2 Liver Center, Saint Louis University, St. Louis, Missouri 631103
Received 5 August 2007/ Accepted 28 August 2007
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) in combination with ribavirin. This leads to the clearance of HCV in 50% and 80% of the cases of HCV genotypes 1 and 2, respectively. Type I IFNs are crucial components of the innate immune response to virus attack. The host response is triggered when a pathogen-associated molecular pattern presented by the infecting virus is recognized and engaged by specific pathogen-associated molecular pattern receptor factors expressed in the host cell, initiating signals that ultimately induce the expression of antiviral effecter genes. In hepatocytes (the primary target cells of HCV infection), independent pathways of retinoic acid-inducible gene I (RIG-I) and Toll-like receptor 3 (TLR-3) signaling comprise two major pathways of host defense triggered by double-stranded RNA (dsRNA) (13). IFN-
and IFN-ß are rapidly synthesized after virus infection, rapidly triggering intracellular signaling events. The subsequent expression of IFN-stimulated genes (ISGs) is central to these antiviral responses. ISG factor 3 (ISGF3) assembles and translocates from the cytoplasm to the nucleus upon IFN stimulation. ISGF3 is a multisubunit transcription factor that interacts with the IFN-stimulated response element present in the promoters of ISGs (31). ISGF3 consists of hetero-oligomers of signal transducers and activators of transcription 1 (STAT1), STAT2, and IFN-regulatory factor 9 (IRF-9). Homodimers of STAT1
and heterodimers of STAT1 and STAT2 are also activated, and IRF-9 is indispensable for their formation. They bind to inverted repeat elements in the promoters of ISGs to induce transcription (34). Oligonucleotide microarray studies have suggested that about 300 genes are induced in response to type I IFNs in fibrosarcoma cells (8). How HCV establishes chronic infection is poorly understood. HCV genotype 2a (clone JFH1) infection does not induce IFN-ß or ISG expression and prevents poly(I-C)-induced IRF-3 nuclear translocation in Huh-7 cells (7). Several HCV proteins are suggested to interact in the IFN signaling pathway. HCV NS3/4A serine protease blocks phosphorylation and the effecter action of IRF-3, a key cellular antiviral signaling molecule (10). RIG-I has been shown to bind to the secondary structured HCV RNA efficiently to confer IFN-ß induction (33). HCV NS2 and NS3/4A proteins are potent inhibitors of host cell cytokine/chemokine gene expression (21). On the other hand, the replication of an HCV subgenomic replicon stimulated the activation of the IFN-ß promoter and the production of IFN in human hepatoma cells (9, 12). Furthermore, many ISGs were transcriptionally elevated in chronic HCV infection (5). It is not well understood how IFN-ß expression and downstream ISG expression are enhanced during HCV infection. A difference may exist between poly(I-C) or Sendai virus (SenV)- and HCV-induced IFN signaling. In this study, we have investigated the IFN signaling pathway following HCV genotype 1a (clone H77) infection of immortalized human hepatocytes (IHH). Our results demonstrate that HCV infection of IHH enhances IFN-ß and STAT1 expression and inhibits vesicular stomatitis virus (VSV) growth.
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Generation of cell culture-grown HCV and infection of IHH.
HCV genotype 1a (clone H77) was grown in IHH as recently described (19). Virus growth was measured from cell culture supernatants filtered through a 0.45-µm cellulose acetate membrane (Nalgene, Rochester, NY) by fluorescent focus-forming assay from serial dilutions. The HCV titer was calculated as
105 focus-forming units/ml. HCV genotype 2a (clone JFH1) was grown in Huh-7.5 cells as previously described (19). For infection, IHH were incubated with HCV (multiplicity of infection [MOI] of 0.02) for adsorption. After 5 h of adsorption, DMEM supplemented with 2.5% heat-inactivated fetal bovine serum was added.
Immunofluorescence. IHH were mock infected or infected with or HCV. At 72 h postinfection, cells were washed and fixed with 3.7% formaldehyde, followed by blocking with 3% bovine serum albumin. Cells were incubated with an HCV NS4-specific fluorescein isothiocyanate-conjugated monoclonal antibody (Biodesign International, Saco, ME) for genotype 1a or anti-HCV NS3 for genotype 2a and an IRF-3-specific antibody (Santa Cruz Biotechnology, Santa Cruz, CA) for 1 h. Cells were washed and incubated with either anti-mouse immunoglobulin secondary antibody conjugated with Alexa 488 or anti-rabbit immunoglobulin secondary antibody conjugated with Alexa 568 (Molecular Probes, Eugene, OR) for 1 h at room temperature. Nuclear staining was performed with TO-PRO-3-iodide (Molecular Probes). Finally, cells were washed and mounted for confocal microscopy (Bio-Rad 1024; Bio-Rad Laboratories, Hercules, CA), and the images were superimposed digitally to allow fine comparisons (3).
Luciferase assay. IHH were infected with HCV at an MOI of 0.02. After 48 h of infection, cells were transfected with plasmid DNAs (0.2 µg) encoding the firefly luciferase gene under the control of the ISG56 promoter (ISG56-luc) or IFN-ß promoter (IFN-ß-luc). At 30 h posttransfection, cells were lysed with reporter lysis buffer (Promega, WI), and the luciferase activity was determined using a luminometer (Optocomp II; MGM Instruments, Hamden, CT). Luciferase activity was normalized with respect to the protein concentration of the cell lysates. In a different experiment, poly(I-C) at 50 µg/ml (Amersham, Piscataway, NJ) was added directly to the medium of IHH transfected with IFN-ß-luc. Alternatively, poly(I-C) at 1.0 µg/ml was complexed with Lipofectamine (Invitrogen, Carlsbad, CA) and introduced into cells by transfection. Cell extracts were prepared for measurements of luciferase activity.
RNA quantitation. Total RNA was isolated from cells using a Purescript RNA isolation kit (Gentra Systems, Minneapolis, MN). cDNA synthesis was performed using random hexamers. The HCV 5' nontranslated region and GAPDH (glyceraldehyde-3-phosphate dehydrogenase) were amplified using specific primers (19). PCR amplification was performed on cDNA templates using primers specific for IFN-ß (sense primer 5'-GATTCATCTAGCACTGGCTGG-3' and antisense primer 5'-CTTCAGGTAATGCAGAATCC-3'), for 2',5'-oligoadenylate synthetase 1 (OAS-1) amplification (sense primer 5'-AGGTGGTAAAGGGTGGCTCC-3' and antisense primer 5'-ACAACCAGGTCAGCGTCAGAT-3') (6), and for TLR-3 (sense primer 5'-TCACTTGCTCATTCTCCCTT-3' and antisense primer 5'-GACCTCTCCATTCCTGGC-3'). For RNA quantitation, real-time PCR was performed using SYBR Green I (ABI PRISM 7700; Applied Biosystems, Foster City, CA). The quantity of specific mRNA was normalized to endogenous references (GAPDH) and expressed as increases (n-fold) over the corresponding mRNA levels in untreated control cells.
Immunoblot analysis.
Cells were harvested using sodium dodecyl sulfate sample buffer. Proteins were subjected to electrophoresis on an 8% polyacrylamide gel and transferred onto a nitrocellulose membrane (Bio-Rad). The membrane was probed with a monoclonal antibody to ISG56 (15), STAT1
(Santa Cruz), or actin (Santa Cruz). Proteins were visualized using an enhanced chemiluminescent ECL Western blot substrate (Pierce, Rockford, IL) scanned by an image analyzer (Amersham Molecular Dynamics, Sunnyvale, CA) to quantify the density of the protein bands using Image Quant software.
Antiviral assay. HCV-infected (MOI of 0.02) or mock-infected IHH were used for an antiviral bioassay using VSV Indiana serotypes (22). The virus titer in the cell culture supernatant was determined by plaque assay using IHH. After 72 h of HCV infection, cells were washed twice in phosphate-buffered saline and challenged with 50 PFU/well of VSV. Virus was adsorbed onto cells for 1 h at 37°C and washed, and cells were overlaid with an equal volume of 2x Eagle's minimal essential medium (BioWhittaker, Walkersville, MD) and 1% agarose dissolved in water (22). VSV plaques were stained after 24 or 48 h by neutral red and counted the next day. In a different experiment, HCV-infected (MOI of 0.02) or mock-infected IHH were washed after 72 h and challenged with VSV (MOI of 0.2). Culture supernatants were collected at different time points and analyzed for VSV-induced cytopathic effects (CPE) by serial 10-fold dilutions in BHK cells (27). Results were obtained by staining cells with crystal violet after 24 h of incubation.
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FIG. 1. IHH enhances TLR-3 mRNA expression following exposure to poly(I-C). IHH maintained in DMEM supplemented with fetal bovine serum support HCV genotype 1a (clone H77) growth. HCV replicated at a similar level in IHH grown in DMEM or SABM (A). IHH were transfected with 0.2 µg of IFN-ß-luc plasmid DNA. After 24 h of transfection, poly(I-C) was added to the culture medium (50 µg/ml) or introduced by transfection (1 µg/ml) and incubated for 16 h. Relative luciferase activity was measured and compared with that of an untreated control (B). Semiquantitative RT-PCR was performed using TLR-3- and GAPDH-specific primers from RNA of IHH exposed to poly(I-C). The sizes of the amplified bands were verified by a DNA marker (not shown). The relative levels of TLR-3 mRNA are compared with the expression level of the housekeeping gene GAPDH (C).
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HCV inhibits poly(I-C)-induced IFN-ß signaling. HCV genotype 2a (clone JFH1) blocks poly(I-C)-induced IFN-ß and ISG expression in Huh-7 cells lacking TLR-3 signaling (7). The human 561 gene, encoding protein ISG56, was most strongly induced in response to type I IFN or dsRNA (2, 15) and inhibits cellular protein synthesis. We examined whether HCV genotype 1a (clone H77) can modulate the activation of poly(I-C)-induced IFN-ß and ISG56 promoter activities in IHH using in vitro reporter assays. We have observed that the poly(I-C)-induced enhancement of IFN-ß and ISG56 promoter activities are inhibited following HCV infection of IHH (Fig. 2). Our results corroborate previous observations (7) that HCV genotype 2a (clone JFH1) infection fails to induce IFN-ß and ISG56 promoter activities in Huh-7 cells following exposure to synthetic dsRNA. However, HCV genotype 1a (clone H77) infection in IHH upregulated IFN-ß and ISG56 promoter activities in the absence of poly(I-C).
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FIG. 2. HCV infection inhibits poly(I-C)-induced IFN-ß and ISG56 promoter activities in IHH. Hepatocytes were infected with HCV genotype 1a (clone H77) at an MOI of 0.02. After 48 h of infection, cells were transfected with either the IFN-ß-luc reporter plasmid (A) or the ISG56-luc reporter plasmid (B). Thirty-six hours later, cells were transfected with or without poly(I-C). Cell extracts were prepared after 18 h, and luciferase activity was measured. Results are presented as means along with standard errors from six different experiments.
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FIG. 3. HCV infection in IHH exhibits predominant nuclear localization of IRF-3. IHH were either mock infected or infected with HCV genotype 1a (clone H77) or 2a (clone JFH1). Seventy-two hours postinfection, cells were either transfected with poly(I-C) or left untransfected. Cells were fixed after 18 h and stained with antibodies against IRF-3 (red) and HCV NS4 for H77 or NS3 for JFH1 (green). Nuclei were visualized by staining with TO-PRO-3-iodide (blue). Arrows indicate the localization of IRF-3 in the nucleus, and arrowheads indicate various degrees of nuclear localization of IRF-3.
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FIG. 4. HCV infection of IHH upregulated IFN-ß mRNA and OAS-1 mRNA expression. Total cellular RNA was extracted from HCV-infected IHH at the indicated time points. Intracellular gene expression levels of IFN-ß, OAS-1, and GAPDH were measured by real-time RT-PCR. The ratios of IFN-ß/GAPDH and OAS-1/GAPDH from HCV H77 (A) and HCV JFH1 (B) are presented as induction (n-fold) relative to basal levels in mock-infected cells.
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protein expression.
Several studies have demonstrated that virus infection, replication, and dsRNA can activate cellular antiviral pathways and induce IFN production, which stimulates STAT1
activation and its downstream signaling molecules such as ISG56. We have examined the downstream signaling pathway of IFN-ß following HCV infection in IHH. Increased expression of STAT1
and ISG56 proteins was observed after infection of IHH with HCV genotype 1a (clone H77) compared to the mock-infected control (Fig. 5). Similar results were also observed in HCV genotype 2a (clone JFH1)-infected IHH (data not shown). Together, our results suggested that the IFN signaling pathway is active in IHH following infection with HCV. Similar results were observed in clinical studies as well as from liver RNA of HCV-infected chimpanzees (5, 16, 24). We have also examined the expression of IFN-ß and OAS-1 up to 10 days following HCV infection of IHH. Approximately 400-fold and 12-fold enhancements of IFN-ß mRNA and OAS-1 mRNA, respectively, were observed, suggesting that HCV infection in IHH activates the IFN signaling pathway.
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FIG. 5. HCV infection enhances ISG56 and STAT1 levels in IHH. Western blot analysis was performed for ISG56 and STAT1 protein expression using specific antibodies at the indicated times after infection (A). The blot was reprobed with an antibody to actin for comparisons of equal protein loading. Densitometric analyses of STAT1 /actin (B) and ISG56/actin (C) were performed using Image Quant software (Amersham, Piscataway, Saco, ME). Results are presented together with standard errors for three independent experiments.
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/ß and ISG expression is the creation of an environment that is hostile to viruses (14). VSV is a negative-strand RNA virus whose growth is sensitive to the effects of the IFN pathway and which can be used to assess the antiviral status of cells (30). To evaluate the antiviral state after infection with HCV, we performed a VSV plaque assay using IHH cells. IHH were infected with HCV genotype 1a (clone H77) (MOI of 0.02), and cells were challenged with a known titer of IFN-sensitive VSV (50 PFU in IHH) after 72 h of infection. Mock-infected cells supported VSV replication as expected, while HCV-infected cells inhibited approximately 50% of VSV plaque formation at 36 h (Fig. 6A). A representative image displaying VSV plaque formation in HCV- or mock-infected IHH is shown (Fig. 6B). Similar results were observed for IHH infected with HCV genotype 2a (data not shown). In a different experiment, we examined the generation of CPE from VSV after growth in HCV- or mock-infected IHH. For this, HCV-infected IHH were washed with phosphate-buffered saline after 72 h of infection and challenged with VSV at an MOI of approximately 0.2. Supernatants were collected at 24 h, and VSV-induced CPE were measured by serial dilutions in BHK cells. Infection of IHH with HCV resulted in 50% CPE at a 100-fold-lower dilution than in mock-infected control cells (Fig. 6C). Together, our results suggested that IHH infected with HCV were inhibitory to VSV replication and corroborate data presented previously.
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FIG. 6. IHH establishes an antiviral state in response to HCV infection. IHH were infected with HCV H77 (MOI of 0.02) and incubated for 72 h. Cells were washed and challenged with a known VSV titer (50 PFU). VSV plaques were observed after 36 h and stained with neutral red for counting. Results from at least four independent assays suggested an approximately 50% reduction in VSV titers in HCV-infected IHH compared to the mock-infected control (A). Results are means of data from four independent experiments, and VSV plaque numbers from mock-infected IHH were arbitrarily assigned a value of 100%. A representative plaque assay is also shown as an illustration (B). HCV H77- or mock-infected IHH grown on a 35-mm plate were challenged with an MOI of VSV of 0.2. Cell culture supernatants were collected at 24 h, and VSV-induced CPE were compared by serial 10-fold dilutions in BHK cells (C). The results are presented as means of data from three independent experiments.
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Viral infections activate IRF-3 through TLR-3 and/or RIG-I/MDA5 pathways. HCV NS3 protease inhibits IRF-3 phosphorylation and blocks the SenV infection-induced IRF-3 shift from the cytoplasm to the nucleus (10). The HCV genotype 1 NS3/4a protein blocks the RIG-I- and MDA5-mediated signaling pathway by cleavage of the MAVS/IPS-1 protein and by blocking downstream IFN-ß activation (11, 29, 39). However, the intracellular signaling pathway(s) targeted by NS3/4A to govern IRF-3 function and HCV replication is incompletely defined. Huh-7 cells lack a functional TLR-3 pathway, and its derivative Huh-7.5 cell line is highly permissive for HCV RNA replication (26). Huh-7.5 cells have a lethal mutation in the RIG-I CARD homology domain that renders them unresponsive to structured HCV RNA or SenV-induced signaling (37). Other HCV proteins, specifically NS2 and NS4B, have been shown to regulate cytokine gene expression (21). We have observed various degrees of nuclear localization of IRF-3 in IHH infected with HCV genotype 1a or 2a, which may be sufficient for the induction of IFN signaling. The apparent discrepancy of IRF-3 localization following HCV JFH1 infection in IHH and Huh-7 cells may be due to the use of different cell types. It is also possible that HCV could utilize an alternate pathway for the enhancement of IFN-ß and its downstream signaling molecules in IHH, supporting data showing that ISGs are up-regulated in patients with chronic hepatitis C (16).
We have also demonstrated that HCV infection in IHH induces IFN-ß mRNA and enhances the expression of its downstream ISG56 and STAT1
proteins. IHH infected with HCV were inhibitory to VSV replication, and the antiviral effect of IFN against VSV was substantially increased upon prior infection with HCV. A similar growth-inhibitory effect was also observed in superinfection experiments with HCV and encephalomyocarditis virus (data not shown). Together, results from our study indicated that HCV infection of IHH induces the IFN signaling pathway, which corroborates data from studies of natural infections. Further studies are necessary to understand how HCV blunts the protective immune response for the establishment of chronic infection.
This work was supported by research grants AI45144 (R.B.R.) and CA85486 (R.R.) from the National Institutes of Health.
Published ahead of print on 5 September 2007. ![]()
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