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Journal of Virology, January 2007, p. 924-933, Vol. 81, No. 2
0022-538X/07/$08.00+0 doi:10.1128/JVI.01824-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.
Z. Lu,3 and
M. V. Borca1*
Plum Island Animal Disease Center, ARS, USDA, Greenport, New York 11944,1 Department of Pathobiology and Veterinary Science, University of Connecticut, Storrs, Connecticut 06269,2 Plum Island Animal Disease Center, DHS, Greenport, New York 119443
Received 21 August 2006/ Accepted 26 October 2006
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Glycosylation is one of the most common types of protein modifications. N-linked oligosaccharides are added to specific asparagine residues in the context of the consensus sequence Asn-X-Ser/Thr (16). Intracellular O glycosylation is characterized by the addition of N-acetylglucosamine to serine and threonine residues in a protein, although the acceptor site does not display a definite consensus sequence (8). Not all predicted sites in a protein sequence are used for carbohydrates, since many of them are inefficiently glycosylated (33) or remain unglycosylated (7).
Putative N-glycosylation sites within CSFV E2 have been predicted previously (23, 42). According to a glycosylation analysis algorithm (http://www.cbs.dtu.dk/services/), E2 of the CSFV strain Brescia has five putative N-linked sites and one putative O-linked glycosylation site, although this is not confirmed by experimental evidence. A sixth N-linked glycosylation site is present in several CSFV strains, with the Brescia sequence differing in one amino acid from the consensus (Asn-X-Ser/Thr). Predicted E2 glycosylation sites are highly conserved among CSFV isolates. Even though glycosylation of Erns, E1, or E2 protein may play a significant role in the CSFV viral replication cycle, the function of added oligosaccharides is not known. In general, glycosylation of enveloped virus structural proteins has been shown to be important for receptor binding, membrane fusion, penetration, virus budding, and infectivity as analyzed in cultured cells (1, 5, 9, 34, 35). However, the significance of viral envelope protein glycosylation in virus replication, pathogenesis, and virulence in the natural host is unknown. Recently it has been shown that glycosylation of porcine respiratory and reproductive syndrome virus GP5 affects virus infectivity, antigenicity, and ability to induce neutralizing antibodies in swine (2). Loss of N-linked glycosylation from the hemagglutinin-neuraminidase (HN) protein from Newcastle disease virus (NDV), a bird pathogen, results in attenuation of the virus in chickens (25). Similarly, degrees of virulence in chickens have been associated with glycosylation patterns of surface proteins hemagglutinin and neuraminidase of the highly pathogenic avian influenza virus H5N1 (13). Pathogenic phenotypes observed upon infection of natural hosts with modified viruses link glycosylation of virus surface proteins with mechanisms such as evasion of the immune system in porcine respiratory and reproductive syndrome virus (2), attenuation in NDV (25), and determinants of virulence in avian influenza (13).
In this study, we used oligonucleotide site-directed mutagenesis of the highly virulent CSFV strain Brescia E2 gene to construct a panel of glycosylation mutants. These mutants were applied to investigate whether the removal of each of these glycosylation sites in the E2 glycoprotein could affect viral infectivity and virulence in swine. We found that rescue of viable virus was completely impaired by removal of all putative glycosylation sites in E2 but was restored when E2 amino acid residue A185 in the mutant virus was reverted to wild-type N. Interestingly, one of the seven single mutations introduced in E2, N116A, renders an attenuated virus (N1v) with decreased virus replication and shedding in infected swine.
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log10 1.8 TCID50/ml. Plaque assays were performed using SK6 cells in six-well plates (Costar). SK6 monolayers were infected, overlaid with 0.5% agarose, and incubated at 37°C for 3 days. Plates were fixed with 50% (vol/vol) ethanol-acetone and stained by immunohistochemistry with MAb WH303 (30). Construction of CSFV glycosylation mutants. A full-length infectious clone of the virulent Brescia isolate (pBIC) (29) was used as a template in which putative O- and N-linked glycosylation sites in the E2 glycoprotein were mutated. Glycosylation sites were predicted using analysis tools from the Center for Biological Sequence Analysis (http://www.cbs.dtu.dk/services/). Mutations were introduced by site-directed mutagenesis using a QuickChange XL site-directed mutagenesis kit (Stratagene, Cedar Creek, TX) performed per the manufacturer's instructions and using the following primers (only forward primer sequences are shown): for O1v, CATCATTACATAAGGACGCTTTAGCCACTTCCGTGACATTCGAGC; for N1v, CCCTGTAGTCAAGGGAAAGTACGCCACAACCTTGTTGAATGGTAG; for N2v, AAAGTACAACACAACCTTGTTGGCTGGTAGTGCATTCTACCTAGT; for N3v, ATTCTACTGTAAATGGGGGGGCGCTTGGACATGTGTGAAAGGTGA; for N4v, ATAGGTAAGTGCATTTTGGCAGCTGAGACAGGTTACAGAATAGTG; for N5v, GAGTCATGAGTGCTTGATTGGTGCCACAACTGTCAAGGTGCATGC; and for N6v, AAGGAAAACTTCCTGTACATTCGCCTACGCAAAAACTCTGAGGAA.
In vitro rescue of CSFV Brescia and glycosylation mutants.
Full-length genomic clones were linearized with SrfI and in vitro transcribed using a T7 Megascript system (Ambion, Austin, TX). RNA was precipitated with LiCl and transfected into SK6 cells by electroporation at 500 V, 720
, and 100 W with a BTX 630 electroporator (BTX, San Diego, CA). Cells were seeded in 12-well plates and incubated for 4 days at 37°C and 5% CO2. Virus was detected by immunoperoxidase staining as described above, and stocks of rescued viruses were stored at 70°C.
DNA sequencing and analysis. Full-length clones and in vitro-rescued viruses were completely sequenced with CSFV-specific primers by a dideoxynucleotide chain termination method (32). Viruses recovered from infected animals were sequenced in the mutated area. Sequencing reaction mixtures were prepared with a Dye Terminator cycle sequencing kit (Applied Biosystems, Foster City, CA). Reaction products were sequenced on a PRISM 3730xl automated DNA sequencer (Applied Biosystems). Sequence data were assembled with the Phrap software program (http://www.phrap.org), with confirmatory assemblies performed using CAP3 (12). The final DNA consensus sequence represented an average fivefold redundancy at each base position. Sequence comparisons were conducted using BioEdit software (http://www.mbio.ncsu.edu/BioEdit/bioedit.html).
Western blot analysis. Glycosylation status of the E2 glycoprotein of CSFV Brescia infectious clone (BICv) and mutant viruses in lysates of SK6 infected cells was analyzed by Western immunoblotting. CSFV E2 was detected with MAb WH303. SK6 monolayers were infected (multiplicity of infection [MOI] of 1) with BICv or glycosylation mutants, harvested at 48 h postinoculation using a NuPAGE LDS sample buffer system (Invitrogen, Carlsbad, CA), and incubated at 80°C for 20 min. Samples were run under reducing or nonreducing conditions in precast NuPAGE 12% bis-Tris acrylamide gels (Invitrogen). Western immunoblot analyses were performed using a WesternBreeze chemiluminescent immunodetection system (Invitrogen).
Treatment of infected cell extracts with peptide N-glycosidase F (PNGase F) (New England BioLabs, Ipswich, MA) was performed following the manufacturer's directions. Briefly, infected cell extracts were denatured at 100°C for 10 min in glycoprotein denaturing buffer (New England BioLabs). The reaction mixture was then put on ice for 5 min, and PNGase F digestion was performed for 20 h in the presence of 1% NP-40.
Animal infections.
Each of the glycosylation mutants was initially screened for its virulence phenotype in swine relative to that of virulent Brescia virus. Swine used in all animal studies were 10- to 12-week-old, 40-lb commercial-breed pigs inoculated intranasally with 105 TCID50 of either mutant or wild-type virus. For screening, 18 pigs were randomly allocated into nine groups of two animals each, and pigs in each group were inoculated with one of the single glycosylation mutants,
O1N1-N6/N3v or BICv. Clinical signs (anorexia, depression, fever, purple skin discoloration, staggering gait, diarrhea, and cough) and changes in body temperature were recorded daily throughout the experiment and scored as previously described (22), with modifications.
To assess the effect of the N1v mutation on virus shedding and distribution in different organs during infection, pigs were randomly allocated into two groups of nine animals each and intranasally inoculated (see above) with N1v or BICv. One pig per group was sacrificed at 2, 4, 6, 8, and 12 days postinfection (dpi). Blood, nasal swabs, and tonsil scraping samples were obtained from pigs at necropsy. Tissue samples (tonsil, mandibular lymph node, spleen, and kidney) were snap-frozen in liquid nitrogen for subsequent virus titration. The remaining four pigs in each room were monitored to check for appearance of clinical signs during a 21-day period.
For protection studies, 12 pigs were randomly allocated into three groups of four animals each. Pigs in groups 1 and 2 were inoculated with N1v, and pigs in group 3 were mock infected. At 3 dpi (group 1) or 28 dpi (group 2), animals were challenged with BICv along with animals in group 3. Clinical signs and body temperature were recorded daily throughout the experiment as described above. Blood, serum, nasal swabs, and tonsil scrapings were collected at various times postchallenge, with blood obtained from the anterior vena cava in EDTA-containing tubes (Vacutainer) for total and differential white blood cell counts. Total and differential white blood cell and platelet counts were obtained using a Beckman Coulter ACT (Beckman Coulter, Fullerton, CA).
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TABLE 1. Set of CSFV E2 glycosylation mutant viruses constructed in this study
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FIG. 1. Schematic representation of glycosylation mutants of CSFV E2 protein, generated by site-directed mutagenesis of a cDNA full-length clone, pBIC. Wild-type E2 glycoprotein is shown at the top. Y, putative glycosylation site. Mutants were named with an O (O-linked glycosylation) or an N (N-linked glycosylation) followed by a number(s) that represents the relative position(s) of putative glycosylation sites within the E2 amino acid sequence (76, 116, 121, 185, 229, 260, or 297). The relative virus yield is the final-point virus yield as a proportion of the final-endpoint (72 h postinfection) virus yield of parental BICv.
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O1N1-N6/N3v, O1N1v, O1N1N2v, and N4N5v were evaluated relative to those of parental BICv in a multistep growth curve (Fig. 2A and B). Primary swine macrophage cultures were infected at an MOI of 0.01 TCID50 per cell. Virus was adsorbed for 1 h (time zero), and samples were collected at various times postinfection through 72 h. All single glycosylation site mutants, except N3v, exhibited growth characteristics practically indistinguishable from those of BICv. N3v exhibited a lower rate of growth and a 10-fold decrease in the final virus yield (Fig. 2A). Multiple glycosylation site mutant
O1N1-N6/N3v also exhibited delayed growth and reduced viral yield compared with multiple site mutants N4N5v, O1N1v, and O1N1N2v and parental BICv (Fig. 2B). Additionally, when viruses were tested for their plaque size in SK6 cells, N1v, N3v, and
O1N1-N6/N3v exhibited a noticeable reduction in plaque size relative to that of BICv (Fig. 3). Interestingly, viruses were not rescued from SK6 cells transfected with RNA transcribed from full-length cDNA clones carrying multiple glycosylation site mutations (
O1N1-N6, O1N1N2N3, N1N2N3, and N3N4N5) that included substitutions at the N3 position (N185).
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FIG. 2. In vitro growth characteristics of E2 individual (A) and multiple (B) glycosylation mutants and parental BICv. Primary swine macrophage cultures were infected (MOI of 0.01) with each of the mutants or BICv and virus yield titers determined at various times postinfection in SK6 cells. Data represent means and standard deviations from two independent experiments. Sensitivity of virus detection was log10 1.8 TCID50/ml.
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FIG. 3. Plaque formation of E2 glycosylation mutants and BICv. SK6 monolayers were infected, overlaid with 0.5% agarose, and incubated at 37°C for 3 days. Plates were fixed with 50% (vol/vol) ethanol-acetone and stained by immunohistochemistry with MAb WH303 (34).
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O1N1-N6/N3v. This virus is deficient in four of five N-linked glycosylation sites that showed different E2 migration patterns (Fig. 4A). Overall, our data firmly suggest that CSFV E2 N1, N2, N3, N4, and N5 sites (Fig. 1) are targeted for glycosylation in swine SK6 cells.
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FIG. 4. Analysis of E2 glycosylation mutants was done by Western immunoblotting. SK6 monolayers were infected (MOI of 1) with each of the mutants or parental BICv or mock infected and harvested 48 h postinfection. Cell lysates were run under reducing (A, B, and D) or nonreducing (C) conditions in 12% sodium dodecyl sulfate-polyacrylamide gels. CSFV E2 was detected with CSFV E2 monoclonal antibody WH303. (C) Lane 1, BICv; lane 2, N1v; lane 3, O1N1-N6/N3v. Asterisks indicate, from top to bottom, E2 homodimers, E1-E2 heterodimers, and monomeric E2, as described by Weiland et al. (44). (D) Lane 1, untreated BICv; lane 2, PNGase F-treated BICv; lane 3, untreated O1N1-N6/N3v.
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O1N1-N6/N3 viruses does not affect the formation of E2 homo- and heterodimers (Fig. 4C). Western blot analysis performed with extracts of SK6 cells infected with either of the viruses and run under nonreducing conditions demonstrated the presence of bands with apparent molecular masses of 50, 66, and 90 to 100 kDa corresponding to E2 monomers, E2-E1 heterodimers, and E2 homodimers, respectively, as previously described by Weiland et al. (44). The pattern of bands was maintained in N1 and
O1N1-N6/N3 viruses with the expected shift in their electrophoretic mobility. Therefore, mutations of CSFV N-linked glycosylation sites would not affect E2 dimerization in infected cells.
Treatment of SK6 BICv-infected cell extracts with PNGase F effectively removed N-linked glycosylation, resulting in a protein that migrated with a slightly faster electrophoretic mobility than the E2
O1N1-N6/N3v protein (Fig. 4D). This is expected, since digestion with PNGase F would generate completely unglycosylated proteins, whereas
O1N1-N6/N3v E2 protein still conserves the N3-linked glycosylation site.
Mutants N1v and
O1N1-N6/N3v lack determinants necessary for CSFV virulence in swine.
To examine the effect of E2 glycosylation on CSFV virulence, pigs were intranasally inoculated with 105 TCID50 of the
O1N1-N6/N3v mutant (Table 1) and monitored for clinical disease. This mutant, lacking all putative glycosylation sites except the N3 site, exhibited an attenuated phenotype (Table 2), with no considerable hematological changes in infected animals (Fig. 5), suggesting a significant role of E2-added oligosaccharides in viral virulence in swine.
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TABLE 2. Swine survival and fever response following infection with CSFV E2 glycosylation mutants and parental BICv
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FIG. 5. Hematological data and virus titers of clinical samples from animals infected with CSFV E2 glycosylation mutants and parental BICv. (A) Peripheral white blood cell (WBC) and platelet (PLT) counts in pigs infected with E2 glycosylation mutant viruses and parental BICv. Counts are expressed as numbers/µl of blood. Data represent means and standard deviations from at least two animals. (B) Virus titers in nasal swabs, tonsil scrapings, and blood from pigs infected with E2 glycosylation mutants or BICv. Each point represents log10 TCID50/ml (means ± standard deviations) from at least two animals. Sensitivity of virus detection was log10 1.8 TCID50/ml.
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Viremia in N1v-inoculated animals was transient (Fig. 5B) and significantly reduced by 104 to 105 from that observed in swine infected with O1v, N2v, N3v, N4v, N5v, N6v, and BICv. A similar pattern was observed for nasal and tonsil samples (Fig. 5B), with no virus titers detected in tonsil samples obtained from N1v-infected animals. In all cases, partial nucleotide sequences of E2 protein from viruses recovered from infected animals were identical to those of stock viruses used for inoculation (data not shown).
The capability of N1v to establish a systemic infection in intranasally inoculated animals was compared with that of virulent parental virus BICv. Randomly selected animals were euthanized at 2, 4, 6, 8, and 12 dpi (one animal/time point/group), and virus titration was performed with collected tissues (tonsils, mandibular lymph nodes, kidney, and spleen). Titers measured in those tissue samples are shown in Table 3. In vivo replication of N1v was transient in tonsils, with titers reduced up to 102 to 105 depending on the time postinfection relative to those of BICv. Differences between N1v and BICv virus titers were also observed for mandibular lymph nodes and spleen, and no mutant virus was detected in kidney, indicating a limited capability of N1v to spread within the host.
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TABLE 3. Titers of virus in tissues after intranasal inoculation with mutant N1v and parental BICv
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FIG. 6. (A) Peripheral white blood cell (WBC) and (B) platelet (PLT) counts in pigs mock vaccinated or vaccinated with N1v and challenged at 3 or 28 dpi with BICv. Values for control, mock-vaccinated, and challenged animals are represented by filled triangles. Counts are expressed as numbers/µl and represent the means and standard deviations from four individuals.
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TABLE 4. Detection of virus in nasal swabs, tonsil scrapings, and blood samples obtained after challenge of N1v-vaccinated animals with virulent BICv
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CSFV strain Brescia E2 glycoprotein contains five or six N-linked sites and one O-linked putative glycosylation site (http://www.cbs.dtu.dk/services/) (23). Sequence analysis of CSFV E2 glycoproteins showed that five of the N-linked glycosylation sites are highly conserved (N116, N121, N185, N229, and N260); three of them, at CSFV E2 positions N116 (N1), N185 (N3), and N229 (N4), are also highly conserved among BVDV types I and II and border disease virus (data not shown), implying an important role for these sites in all pestiviruses. However, very little is known about the role of glycosylation in the function of pestivirus glycoproteins. A previous study that examined the closely related pestivirus BVDV E2 glycoprotein expressed in a baculovirus/insect cell system (26) showed that the pattern of glycosylation affects the ability of the isolated glycoprotein to prevent infection of calf testis cells with BVDV, an otherwise inhibitory effect observed with wild-type E2 protein (14). The same study also showed that modification of N1 and N3 sites in BVDV E2 impaired expression and secretion of the protein in insect cells, suggesting that glycosylation at those sites is essential for correct folding and subsequent secretion of E2. Although these experiments were performed with a baculovirus expression system and in our study we used recombinant viruses, the gathered evidence supports the idea that glycosylation at N1 and N3 sites is critical for E2 activity.
Electrophoretic mobility analysis of the E2 glycoprotein in lysates obtained from infected SK6 cells shows that amino acid residues N116 (N1v), N121 (N2v), N185 (N3v), N229 (N4v), and N260 (N5v) are used for carbohydrate addition (Fig. 4). In vitro growth characteristics and virus progeny yields of these mutants assessed in primary swine macrophage cultures, a CSFV natural target cell, were comparable to that of parental BICv, except mutant N3v (with the N185A mutation), which demonstrated delayed growth kinetics (Fig. 2A). Suggestive of a role for CSFV E2 glycosylation patterns in virus attachment, entry, and/or exit from infected cells was the small-plaque phenotype exhibited by single mutants N1v (with the N116A mutation) and N3v (with the N185A mutation) and multiple mutant
O1N1-N6/N3v, in which a substantial plaque size reduction relative to that of parental BICv was observed to occur in infected SK6 cells (Fig. 3). Similarly, loss of one specific N-linked glycosylation site (G4) from the HN protein of NDV yielded plaques in cultured cells of considerably smaller size (25), while three other single mutants (G1, G2, and G3) produced plaques comparable to the size of the parental virus. The G4 glycosylation site in the NDV HN protein has been shown to be necessary for correct folding and transport of the protein to the cell surface of infected cells (19, 25). Interestingly, G4 virus was considerably attenuated in chickens (25). In the case of CSFV, we have observed previously that other BICv-derived viruses containing recombinant E2 protein (29) showed reduced plaque size as well. Like N1v and
O1N1-N6/N3v here, those recombinant viruses were also attenuated in swine. In this study we also observed that mutant N3v showed delayed growth kinetics in primary swine macrophage cultures. Further, mutant viruses showing plaque sizes smaller than those of parental BICv on SK6 cells (Fig. 2A and 3) retained the capability of causing severe disease in swine (Table 3). These data suggest that changes in the E2 protein due to the mutation N185A in N3v, unlike the N116A mutation in N1v, are not sufficient to alter virus range within the host.
Cleavage and glycosylation patterns of the hemagglutinin gene of H5 avian influenza viruses have been shown to affect pathogenicity in chickens (4, 11). More recently it has been shown that glycosylation patterns of the neuraminidase gene of highly pathogenic H5N1 avian flu viruses are important for increased virulence in chickens (13). The mechanisms by which these patterns affect avian flu virulence are unknown. Similarly, a single mutation (mutant N1v) or multiple mutations (mutant
O1N1-N6/N3v) within E2 rendered attenuated viruses with restricted in vivo replication ability (Tables 3 and 4). Unlike the acute fatal disease induced by BICv, infections caused by these mutants were subclinical in swine and characterized by decreased viral replication in target organs and reduced virus shedding. Interestingly, mutants O1v, N2v, N3v, N4v, N5v, and N6v retained the same capability of causing severe disease in swine as parental BICv, showing that in vivo E2 functions are retained and not influenced by the lack of glycans at positions N116, N121, N185, N229, and N260. As with avian flu, the genetic basis and the molecular mechanisms underlying CSFV virulence remain unknown.
As shown in this study, single mutations of E2 putative glycosylation sites have no effect on in vitro or in vivo infectivity of CSFV, with the exception of residue N116 in the N1v mutant. However, when multiple site mutations were introduced in E2, we observed that certain residue changes (O1N1N2N3, N1N2N3, N3N4N5, and O1N1-N6) rendered nonviable viruses (data not shown). Conversely, when residue N185 (N3) was left unmodified in those clones, virus viability was not affected.
In summary, our studies determined the utilization of five potential N-glycosylation sites in the CSFV strain Brescia E2 protein. Individual N-linked glycosylation sites are not essential for viral particle formation or virus infectivity in cultured swine macrophages or the natural host, with one individual site, N116, involved in attenuation of the virulent parental virus. This study also showed that in the context of three or more putative glycosylation site modifications, residue N185 is critical for virus viability. The effective protective immunity elicited by N1v suggests that glycosylation of E2 could be modified for the development of live attenuated vaccines. An improved understanding of the genetic basis of virus virulence and host range will permit future rational design of efficacious biological tools for controlling CSF.
Published ahead of print on 15 November 2006. ![]()
Present address: Plum Island Animal Disease Center, APHIS, USDA, Greenport, NY 11944. ![]()
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