Files in this Data Supplement:

• Supplemental file 1 - Supplemental material (Description of our proteasomal peptide prediction algorhitm.)
  MS Word document, 72K.
• Supplemental file 2 - Supplemental material List of the nonhuman viruses from the NCBI database used in this analysis.)
  MS Word document, 132K.
• Supplemental file 3 - Table S1 (SIR score nonhuman herpesviruses.)
  MS Word document, 37K.
• Supplemental file 4 - Fig. S1 (A negative control. SIR score of MHV68 on human MHC molecules and human herpesviruses on mouse MHC molecules.)
  MS Word document, 72K.
• Supplemental file 5 - Supplemental material (HSV-1 data used in this analysis. List of the proteins, stage of expression, number of average observed epitopes, and average SIR score.)
  MS Word document, 101K.
• Supplemental file 6 - Supplemental material (EBV data used in this analysis. List of proteins, stage of expression, number of average observed epitopes, and average SIR score).
  MS Word document, 119K.
• Supplemental file 7 - Supplemental material (CMV data used in this analysis. List of the proteins, stage of expression, number of average observed epitopes, and average SIR score.)
  MS Word document, 254K.
• Supplemental file 8 - Supplemental material (KSHV-1 data used in this analysis. List of proteins, stage of expression, number of average observed epitopes, and average SIR score.)
  MS Word document, 156K.
• Supplemental file 9 - Supplemental material (MHV68 data used in this analysis. List of proteins, stage of expression, number of average observed epitopes, and average SIR score.)
  MS Word document, 99K.
• Supplemental file 10 - Supplemental material (Average fraction (over alleles) of nonamers that actually are epitopes in the KSHV analysis.)
  MS Word document, 40K.