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Journal of Virology, April 2006, p. 4174-4178, Vol. 80, No. 8
0022-538X/06/$08.00+0 doi:10.1128/JVI.80.8.4174-4178.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Role of Endosomal Cathepsins in Entry Mediated by the Ebola Virus Glycoprotein
Kathryn Schornberg,1
Shutoku Matsuyama,2
Kirsten Kabsch,2
Sue Delos,2
Amy Bouton,1*,
and
Judith White1,2*
Departments of Microbiology,1
Cell Biology, University of Virginia, Charlottesville, Virginia 22908-07342
Received 17 December 2005/
Accepted 29 January 2006

ABSTRACT
Using chemical inhibitors and small interfering RNA (siRNA),
we have confirmed roles for cathepsin B (CatB) and cathepsin
L (CatL) in Ebola virus glycoprotein (GP)-mediated infection.
Treatment of Ebola virus GP pseudovirions with CatB and CatL
converts GP1 from a 130-kDa to a 19-kDa species. Virus with
19-kDa GP1 displays significantly enhanced infection and is
largely resistant to the effects of the CatB inhibitor and siRNA,
but it still requires a low-pH-dependent endosomal/lysosomal
function. These and other results support a model in which CatB
and CatL prime GP by generating a 19-kDa intermediate that can
be acted upon by an as yet unidentified endosomal/lysosomal
enzyme to trigger fusion.

TEXT
The Ebola virus glycoprotein (GP) is a class I viral fusion
protein composed of a receptor binding subunit (GP1) and a fusion
subunit (GP2) that are linked by a disulfide bond. There are
three well-characterized means by which class I viral fusion
proteins are triggered for fusion: exposure to low pH, interaction
with receptors at neutral pH, and a two-step process that involves
interaction with receptors at neutral pH followed by exposure
to low pH, as reviewed in reference
3. Previous work has shown
that low endosomal pH is required for infection mediated by
vesicular stomatitis virus (VSV) pseudovirions bearing Ebola
virus GP (VSV-GP), but it is not sufficient to trigger GP-mediated
cell-cell fusion (
17). Moreover, low pH does not induce fusion
of red blood cells to GP-expressing cells, even if the cells
are engineered to express the influenza hemagglutinin precursor
to provide strong red cell binding. Low pH also does not overcome
a bafilomycin block to infection of prebound VSV-GP, performed
in either a one-step (
21) or a two-step (
10,
13) paradigm (data
not shown). These observations, together with the finding that
elimination of the furin cleavage site between GP1 and GP2 does
not ablate infection (
14,
22), led us to suspect that low pH
is required for optimal functioning of endosomal proteases.
A survey of class-specific protease inhibitors revealed that
agents that target endosomal cysteine proteases (leupeptin,
E64d, and MG132) inhibited infection by VSV-GP, while agents
that target serine or aspartyl proteases or the proteasome did
not (data not shown). This suggested that endosomal cysteine
proteases might be required for Ebola virus GP-mediated infection.
Indeed, while our work was in progress, Chandran et al. showed
that two endosomal cysteine proteases, cathepsin B (CatB) and
cathepsin L (CatL), are required for infection mediated by Ebola
virus GP (
2). CatB and CatL are ubiquitously expressed across
the wide range of cells susceptible to Ebola virus infection
(
12), and they have previously been shown to be involved in
the entry of reovirus (
4). CatL has also recently been shown
to be involved in entry mediated by the severe acute respiratory
syndrome (SARS) coronavirus spike glycoprotein (
16) as well
as in processing the fusion glycoprotein of Hendra virus (
15).
Using VSV pseudotypes bearing full-length Ebola virus GP or VSV G and encoding GFP (VSV-GP and VSV-G, respectively), we first confirmed a need for CatB and CatL in infection mediated by Ebola virus GP. As seen in Fig. 1A, infection by VSV-GP was greatly reduced in the presence of the CatB inhibitor CA074Me and was also reduced, although to a lesser extent, in the presence of the CatL inhibitor Z-FY(t-Bu)-dmk. Infection by VSV-G was not affected by either of these inhibitors at the same concentrations. We next used small interfering RNA (siRNA) duplexes to more specifically knock down the expression of CatB and/or CatL in Vero cells. CatB protein levels were reduced between 50 to 90% in CatB siRNA-treated cells with an average of 83% reduction in CatB activity (Fig. 1B, lane 2). In the presence of CatB siRNA, CatL protein levels and activity were consistently elevated (lane 6). CatL expression was reduced between 70 to 100% in cells treated with CatL siRNA, coincident with a 98% reduction in CatL activity (lane 7). CatB expression and activity were largely unaffected by CatL siRNA (lane 3). In cells treated with combined CatB and CatL siRNAs, both CatB and CatL expression and activity were reduced by at least 90% (lanes 4 and 8). Infection by VSV-GP was reduced by an average of 80% in CatB siRNA-treated cells and 46% in CatL siRNA-treated cells (Fig. 1C). When cells were treated with a combination of CatB and CatL siRNA, infection by VSV-GP was reduced by an average of 89%. Infection by VSV-G was not significantly reduced with any of these treatments. These siRNA data confirm roles for CatB and CatL in Ebola virus GP-mediated infection of primate (Vero) cells and are in agreement with Chandran et al., who found similar requirements using mouse embryo fibroblasts from CatB and CatB/CatL knockout mice (2).
CatB and CatL could be required to activate cellular proteins
involved in viral entry and/or to process Ebola virus GP as
a prelude to fusion. Therefore, we first tested whether CatB
and CatL could digest Ebola virus GP in vitro. Treatment of
purified VSV-GP with CatB alone digested GP1 from a 130-kDa
species to a 50-kDa species with some digestion to a 19-kDa
species (Fig.
2A, lane 3). Treatment with CatL alone digested
GP1 predominantly to a 20-kDa species (lane 4). Combined digestion
with CatB plus CatL produced a strong doublet comprised of the
19-kDa and 20-kDa forms (lane 5). Digestion of VSV-GP with CatB
plus CatL appeared to be processive, as seen by the time-dependent
appearance of the 20-kDa form followed by the 19-kDa form (Fig.
2B, lanes 3 to 6). Longer film exposures show that accumulation
of the 20-kDa and 19-kDa forms was accompanied by the progressive
loss of the 130-kDa and then the 50-kDa forms of GP1 (data not
shown). We hypothesize that the 50-kDa species represents removal
of the O-linked glycosylation-rich mucin-like domain of GP1,
as genetic deletion of this region results in a GP1 species
of similar size (
8). Interestingly, treatment of VSV-GP with
the bacterial enzyme thermolysin, which has low cleavage specificity,
also generated a 19-kDa form of GP1 (Fig.
2B, lane 2). This
suggests that there may be a specific region of GP1 that is
hypersensitive to protease digestion, as has been seen for reovirus
(
4-
7). Treatment of VSV-GP with CatB plus CatL for extended
periods of time resulted in a significant reduction of GP1 after
60 min and a loss of detectable GP1 after 120 min (Fig.
2C,
lanes 8 and 9). Importantly, the fusion subunit GP2 was significantly
reduced in virus samples treated with CatB plus CatL for 120
min where GP1 was completely proteolyzed (lane 9).
To test whether in vitro cleavage of GP circumvented the requirement
for CatB and/or CatL during the process of viral entry, VSV-GP
was either mock treated (no enzyme) or treated with CatB plus
CatL or thermolysin for 20 min (conditions generally yielding
maximal, although not complete, conversion to the 19-kDa form
of GP1) prior to infection of cells treated with CatB and CatL
inhibitors or siRNAs. Treatment of VSV-GP with CatB plus CatL
or thermolysin led to a dramatic and reproducible enhancement
of infection, on average a 20-fold increase over mock-treated
virus (Fig.
3A and data not shown; note that for these experiments
the MOI was 10-fold lower than that used in Fig.
1). Since VSV-GP
bearing 19-kDa GP1 is still highly infectious, we postulate
that the 19-kDa GP1 fragment contains the 150 amino acids from
the amino-terminal end of GP1 that is predicted by Manicassamy
and coworkers to contain the receptor binding domain (
9). The
enhancement of infection could be at least partly due to the
removal of the mucin-like domain of GP1, as we and others have
observed that virus particles pseudotyped with a form of Ebola
virus GP that lacks the mucin-like domain have increased titers
over virus particles bearing wild-type Ebola virus GP (
2,
8).
Importantly, infection with CatB plus CatL- or thermolysin-treated
virus was significantly enhanced, even in the presence of the
CatB inhibitor (Fig.
3A) and CatB siRNA (data not shown) but
was only slightly enhanced in the presence of CatL inhibitor
or siRNA compared to mock-treated virus. When the percent of
infected inhibitor- or siRNA-treated cells was normalized to
the percent of infected control-treated cells, the difference
in resistance of CatB plus CatL- or thermolysin-treated virus
(i.e., with 19-kDa GP1) to the CatB inhibitors compared to the
CatL inhibitors was more evident (Fig.
3B and C). Acquisition
of resistance to the CatB inhibitor and siRNA correlated with
conversion to the 19-kDa form, and not the 20-kDa form, of GP1
(data not shown). Importantly, infection by pseudovirions bearing
19-kDa GP1 was still inhibited by bafilomycin and the general
cysteine protease inhibitor E64d (Fig.
3D). This suggests that,
while CatB and CatL digest GP to a highly active 19-kDa form
that is largely independent of CatB, there is still a need for
a cellular factor(s) whose function (e.g., zymogen activation)
requires low pH and an E64d-inhibited activity.
Based on these data, we favor a two-step model in which cleavage
of GP1 by CatB plus CatL primes GP by generating a key 19-kDa
GP1 intermediate, while a third endosomal/lysosomal factor triggers
fusion (Fig.
4A). This differs significantly from the model
proposed by Chandran et al. (
2), in which cleavage by CatL (or
CatB) generates an 18-kDa GP1 intermediate and in which further
cleavage by CatB triggers fusion (Fig.
4B). This group found
that, after formation of an 18-kDa intermediate, continued proteolysis
by CatB digested GP1 to a form that was no longer detectable
by Western blotting and inactivated the virus. They suggested
that inactivation of infectivity was due to premature deployment
of the fusion machinery. In the model proposed by Chandran et
al., CatB and CatL are therefore both necessary and sufficient
for infection. However, we have been able to trap a 19-kDa GP1
species (Fig.
4A) that promotes enhanced infectivity that is
largely independent of the requirement for further action by
CatB. This suggests that some factor other than CatB is required
to trigger fusion. One possible explanation for the difference
between our work and that of Chandran et al. is that the 18-kDa
species generated by Chandran et al. (Fig.
4B, royal blue) may
be equivalent to our 20-kDa intermediate (Fig.
4A, royal blue).
The difference in apparent molecular mass could be due to the
removal of an N-linked oligosaccharide chain in their 18-kDa
species caused by treatment with N-glycosidase F. While in our
hands digestion with CatB plus CatL resulted in the capture
of a highly active 19-kDa species that is largely independent
of further need for CatB (Fig.
4A), Chandran et al. did not
detect a subsequent discrete digestion product beyond their
18-kDa species. This difference could be due to our use of high-specific-activity
CatB or to other technical differences. Importantly, because
extensive digestion with CatB plus CatL removes all detectable
GP1 from the viral particle (Fig.
2C in this study, Fig.
2E from the Chandran et al. study), it is formally possible that
the lack of infectivity observed by Chandran et al. under these
conditions may have arisen from an inability of the virus to
bind to target cells. Moreover, under conditions where we were
able to show loss of detectable GP1 (prolonged digestion of
the virus with CatB and CatL; see Fig.
2C), we also observed
significant loss of GP2. If the proteolysis performed by Chandran
et al. resulted in a similar loss of GP2, the virus would therefore
likely be unable to complete the fusion step even if it could
bind. Based on these factors, we favor the model presented in
Fig.
4A, in which CatB and CatL are necessary, but not sufficient,
for infection and in which an additional factor is required
to trigger fusion.
The model proposed in Fig.
4A postulates that there is an additional,
as yet unknown, cellular factor that triggers primed GP for
fusion. A potential candidate for this second step is a lysosomal
thiol reductase, akin to what has recently been shown with the
Env glycoprotein of murine leukemia virus (
18,
19). In the case
of murine leukemia virus, receptor binding to the SU subunit
primes Env for subsequent triggering by isomerization of the
SU-TM disulfide bond by an internal thiol reductase activity.
We propose that, for Ebola virus GP, CatB and CatL cleavage
of the GP1 subunit primes GP by exposing a critical disulfide
bond (perhaps the disulfide bond that links GP1 and GP2), making
it accessible to reduction by a lysosomal thiol reductase, such
as gamma-interferon-inducible lysosomal thiol reductase (
1).
Reduction would then relieve the GP1 clamp, thus allowing conformational
changes in the GP2 subunit that trigger fusion (Fig.
4A). Our
data with thermolysin-treated virus indicate that other proteases
are also able to "prime" GP1, as has been shown for reovirus
(
4-
7) and severe acute respiratory syndrome virus (
11). This
could potentially result in a lack of efficacy of inhibitors
of viral entry that are targeted solely to CatB and/or CatL.
Work is currently under way to identify the protein(s) involved
in the trigger step and to evaluate this step as a potential
target for fusion inhibitors.
Reagents.
Control nontargeting small interfering RNA (siRNA) oligonucleotides, SMARTpool oligonucleotides consisting of four different siRNA oligonucleotides targeting CatB, and an siRNA oligonucleotide targeted to nucleotides 98 to 116 of the human cathepsin L cDNA sequence (15) were purchased from Dharmacon. Antibodies to CatB and CatL were purchased from Athens Research and Technology. The polyclonal GP1 antibody, raised against sGP-Fc, was a gift from Paul Bates, University of Pennsylvania. The rabbit polyclonal GP2 antibody was raised against the six-helix bundle core of the GP2 subunit (cDNA encoding the six-helix bundle construct was a gift from Peter Kim, Massachusetts Institute of Technology). Innozyme CatB and CatL activity assay kits (Calbiochem) were used to measure CatB and CatL enzyme activities according to the manufacturer's directions.
VSV pseudotypes and infections.
VSV pseudotypes encoding green fluorescent protein (GFP) and complemented with the glycoproteins of Ebola virus Zaire (VSV-GP) or VSV (VSV-G) were made in BHK-21 cells as described previously (17). The virus-containing supernatants were harvested and concentrated by pelleting through a 20% sucrose cushion. Virus stocks were titered by infecting Vero cells with serial dilutions and counting GFP-positive cells by flow cytometry or fluorescence microscopy (typical titers for VSV-GP were 108 IU/ml and were 109 IU/ml for VSV-G) and stored in aliquots at 80°C in 10% sucrose. VSV-GP and VSV-G were used to infect Vero cells at approximate multiplicities of infection (MOIs) of 0.2 to 0.4 and 0.5 to 1.0, respectively, in Dulbecco's modified Eagle medium plus 5% fetal bovine serum, unless otherwise indicated. Twenty-four hours postinfection, the cells were fixed and the percentage of GFP-positive cells was determined by counting 5,000 to 10,000 cells per sample by flow cytometry.
Cell treatments.
For chemical inhibitor experiments, Vero cells were pretreated with vehicle alone (dimethyl sulfoxide), the CatB inhibitor CA074Me (Calbiochem), and/or the CatL inhibitor Z-FY(t-Bu)-dmk (Calbiochem) at the indicated concentrations for 2 h at 37°C. Cells were infected with VSV-GP and VSV-G in the presence of fresh inhibitors, as described above. For siRNA experiments, Vero cells were transfected with a nontargeting control siRNA oligonucleotide or siRNA oligonucleotides targeting CatB and/or CatL at 100 nM final concentrations using Transit TKO (Mirus Corporation). Seventy-two hours posttransfection, the cells were infected with VSV-GP and VSV-G as described above.
In vitro proteolysis of GP.
VSV-GP was treated with 20 µg/ml CatB (specific activity, 914 U per mg) and CatL (specific activity, 3.8 U per mg) (Athens Research and Technology), unless otherwise indicated, at pH 4.5 in HEPES-MES buffer (40 mM HEPES, 40 mM morpholinepropanesulfonic acid [MES], 50 mM NaCl) with 4 mM dithiothreitol or with 0.5 mg/ml thermolysin (Sigma) in HEPES-MES buffer at pH 7.5 for the indicated times at 37°C. The reactions were neutralized by the addition of 2 M Tris, pH 8.0, and 50 µM E64 or with the addition of 0.5 mM EDTA, respectively. Mock treatments were conducted in the same buffers but contained no enzyme. Virus samples were then analyzed by Western blotting as described previously (20) or were used to infect Vero cells at an approximate MOI of 0.02 to 0.04 (based on the titer of untreated virus) as described above.

ACKNOWLEDGMENTS
We thank Robert Netter and Paul Bates for the GP1 antibody,
Peter Kim for the GP2 six-helix bundle construct used to make
the immunogen for the GP2 antiserum, Gary Nabel for the plasmid
encoding Ebola virus Zaire GP, and Michael Whitt for the VSV
pseudotyping system and associated protocols. We thank Zaoying
Chen for several preparations of VSV-GP pseudotypes and Cara
Pager and Rebecca Dutch for sharing the CatL siRNA sequence
prior to publication.
Work was supported by grants from the NIH to J.M.W. (AI055925 and AI22470) and A.H.B. (AI050733). K.S. and K.K. were supported in part by training grants for infectious diseases (5T32 AI07046) and biodefense (5T32 AI055432), respectively. S.M. was supported by a fellowship from the Japan Society for the Promotion of Science.

FOOTNOTES
* Corresponding author. Mailing address: University of Virginia, 1300 Jefferson Park Ave., Charlottesville, VA 22908-0734. Phone: (434) 924-2593. Fax: (434) 982-3912. E-mail for A. Bouton:
ahb8y{at}virginia.edu; E-mail for J. White:
jw7g{at}virginia.edu.

Equal contributors. 

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Journal of Virology, April 2006, p. 4174-4178, Vol. 80, No. 8
0022-538X/06/$08.00+0 doi:10.1128/JVI.80.8.4174-4178.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
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