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Journal of Virology, April 2006, p. 3694-3700, Vol. 80, No. 8
0022-538X/06/$08.00+0 doi:10.1128/JVI.80.8.3694-3700.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Division of Cellular Biology and Immunology, Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah 84132
Received 26 November 2005/ Accepted 25 January 2006
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Cyclophilins owe their name to their ability to bind to the immunosuppressive drug cyclosporine A (CsA) with high affinity (17). CsA binding to CypA potently inhibits CypA isomerase activity. The immunosuppressive effects of CsA result from binding of the CypA/CsA complex to calcineurin, resulting in calcineurin inhibition (20, 24).
A role for CypA in the life cycle of primate lentiviruses emerged in 1993 with the isolation of CypA as a yeast two-hybrid partner of human immunodeficiency virus type 1 (HIV-1) core protein, p24 (26). CypA binding to p24 is necessary for the infectivity of HIV-1, and blocking this binding, either through site-directed mutations in p24 or competitive inhibitors such as CsA, severely impairs the infectivity of HIV-1 particles (reviewed in reference 14). It is thought that the binding of CypA to p24 is a necessary event for the efficient uncoating of viral particles following viral entry (25). Recent evidence indicates that the effects of CsA on HIV-1 replication are not solely derived from CsA inhibition of CypA binding to p24 in target cells, as treating HIV-1-producing cells with CsA also reduces the infectivity of progeny viral particles, albeit in a CypA-independent fashion (9, 18, 30).
HIV-1 Vpr exerts several deleterious effects when expressed in human cells, including induction of cell cycle arrest in G2 and apoptosis. Vpr induces a DNA damage-like signal that triggers known downstream checkpoint responses involving certain cell cycle-related kinases and phosphatases, such as ATR, Chk1, Wee1, and Cdc25 (5, 15, 19, 21, 22, 28, 29, 33, 37). Recent evidence suggests that Vpr interacts with the chromatin in a unique manner, which results in activation of the G2 checkpoint without causing double-strand breaks (22). Vpr is packaged into virus particles, and its expression has been shown to induce a plethora of other effects in target cells, including transactivation of the viral promoter, modulation of the accuracy of the reverse transcription process, induction of apoptosis, and disruption of nuclear envelope integrity (reviewed in references 4, 23, and 35).
The Vpr gene product is a small 96-amino-acid protein. The N terminus of Vpr contains four conserved proline residues (positions 5, 10, 14, and 35). These proline residues were shown to undergo cis-trans isomerism to varying degrees in studies that used a synthetic peptide encompassing residues 1 to 40 of Vpr (8). The activity of CypA was shown to be required for the biochemical stability and function (specifically, induction of G2 arrest) of Vpr, and proline-35 was shown to be essential for both interaction with CypA and activity of Vpr (34).
In the present study, we examine the impact of CypA interaction on Vpr-induced G2 arrest and Vpr levels of expression. In agreement with the studies by Zander et al. (34), we find that Vpr can be coimmunoprecipitated with CypA and that this interaction is disrupted by mutation of the proline-35 residue. However, substitution of proline-35 by alanine or asparagine results in stable proteins that fail to bind to CypA and are still capable of inducing cell cycle arrest. Cells in which CypA had been genetically ablated are sensitive to Vpr-induced G2 arrest. In addition, incubation with CsA abolished the Vpr-CypA interaction but failed to inhibit Vpr-induced G2 arrest. We propose that the ability of Vpr to interact with CypA is independent of its ability to induce cell cycle arrest.
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Lentivirus vectors.
Lentivirus vectors were produced by transient transfection of HEK293FT cells. For defective lentivirus vector production, plasmids pHR-GFP and pHR-VPR and the indicated mutants were cotransfected with pCMV
R8.2
Vpr (3) and pHCMV-VSVG (2) by calcium phosphate-mediated transfection (36). Virus supernatants were collected at 48, 72, and 96 h posttransfection. Harvested supernatants were cleared by centrifugation at 2,000 rpm (828 x g). Cleared supernatants were concentrated by ultracentrifugation at 25,000 rpm (115,889 x g) for 1.5 h at 4°C. Concentrated virus was allowed to resuspend overnight at 4°C, and the suspension was frozen at 80°C for storage. Vector titers were measured by infection of HeLa cells as described below, followed by flow cytometric analysis of cells that were positive for the reporter molecule, green fluorescent protein (GFP). Vector titers were calculated with the equation [(F x C0)/V] x D, where F is the frequency of GFP-positive cells found by flow cytometry, C0 is the total number of target cells at the time of infection, V is the volume of inoculum, and D is the virus dilution factor. The virus dilution factor used for titrations was 10. The total number of target cells at the time of infection was 1 x 106. Infections were performed at a multiplicity of infection (MOI) of 2 with 10 µg of Polybrene/ml for 2 h.
HIV-1 production and infections. HIV-1 molecular clones pNL4-3 and pNL4-3-VprX were transfected into 293FT cells by calcium phosphate transfection as described for lentiviral vector production. Twenty-four hours after transfection, virus-producing 293FT cells were cocultured with 1 x 107 MT-2 human T-cell leukemia virus-transformed CD4+ T cells for 5 h. MT-2 cells were then cultured alone until approximately 75% of cell blasts exhibited syncitia. Virus-containing supernatants were then cleared of cell debris by centrifugation at 828 x g for 10 min. Viral stocks were then frozen at 80°C. Cells were infected by spin infection as follows: 1 x 106 cells were diluted in viral stocks with 10 µg/ml Polybrene and centrifuged at 1,700 x g for 2 h at 25°C, after which cells were resuspended in normal growth medium and incubated at 37°C in 5% CO2.
Cell lysis and immunoprecipitation assays. HEK293FT cells were transfected using calcium phosphate-mediated transfection. Twenty-four hours posttransfection, cells were detached using trypsin, washed, and lysed in lysis-and-immunoprecipitation (IP) buffer (20 mM Tris, pH 7.5, 100 mM NaCl, 0.5% NP-40, 0.5 mM EDTA) containing protease inhibitors (Complete tablets; Roche, Indianapolis, IN) for 10 min on ice. Lysates were centrifuged at 2,000 rpm for 10 min and supernatants were collected. One microliter of rabbit anti-CypA (undiluted serum; EMD Biosciences, San Diego, CA) antibody was added, and tubes were incubated with an end-over-end mixing at 4°C for 1 h. Protein A/G agarose (Santa Cruz Biotechnology, Santa Cruz, CA) was added to immunoprecipitates and incubated overnight with an end-over-end mixing at 4°C. Immunoprecipitates were washed five times with IP buffer, followed by boiling in XT sample buffer (Bio-Rad, Hercules, CA).
Western blotting. Cell lysates or IP eluates were boiled for 5 min prior to being loaded on Criterion XT bis-tris gels (Bio-Rad, Hercules, Calif.) for electrophoretic separation. Proteins were transferred to Immobilon polyvinylidene difluoride membranes (Millipore, Bedford, MA) by a semidry transfer method (Bio-Rad) and then blocked for 45 min at room temperature in blocking solution (5% skim milk and 0.1% Tween 20 in phosphate-buffered saline [PBS]). Rabbit primary antibodies against CypA (1:10,000; EMD Biosciences, San Diego, CA), actin (1:1,000; Santa Cruz), or mouse anti-hemagglutinin (HA) (1:1,000; Covance, Berkeley, CA) were applied at indicated dilutions and incubated at 4°C overnight. Blots were washed three times in TPBS (0.1% Tween 20 in PBS) for 5 min, each time at room temperature. Secondary horseradish peroxidase-conjugated goat anti-mouse or anti-rabbit immunoglobulin G antibodies were applied for 45 min at room temperature. Blots were washed again three times in TPBS before protein detection with enhanced chemiluminescence reagent (Amersham, Buckinghamshire, England).
Cell cycle analysis. At given times postinfection, Jurkat cells were collected, washed with fluorescence-activated cell sorting (FACS) buffer (2% FBS, 0.5 mM EDTA, and 0.02% sodium azide in PBS), fixed with 2% paraformaldehyde in PBS, and permeabilized with 0.1% Triton X-100 in PBS for 15 min. Cells were washed again with FACS buffer, incubated in DNA staining buffer (10 µg of propidium iodide/ml and 11.25 kU of RNase A/ml in FACS buffer) for 15 min, and analyzed by FACScan flow cytometry for GFP expression or DNA content (Beckton Dickinson, Franklin Lakes, N.J.). For detection of HIV-1 p24 antigen-expressing cells, we used a previously described protocol (6, 12). Briefly, 1 x 106 cells were washed twice in flow cytometry buffer and permeabilized using the Cytofix/Cytoperm kit (Pharmingen BD, San Jose, CA). The permeabilized cells were resuspended in 100 µl of intracellular staining buffer and incubated at 4°C with 5 µl of human anti-HIV p24 monoclonal antibody (obtained from the AIDS Research and Reference Reagent Program, Division of AIDS, National Institute of Allergy and Infectious Diseases, National Institutes of Health; monoclonal antibody to HIV-1 p24, clone 71-31, was from Susan Zolla-Pazner [16]). The cells were washed twice in intracellular staining buffer, resuspended at 1 x 107 cells/ml in intracellular staining buffer, and incubated at 4°C with 10 µl fluorescein isothiocyanate-conjugated F(ab')2 goat anti-human immunoglobulin G (Caltag, Burlingame, CA) for 30 min. The antibody-labeled cells were washed twice with intracellular staining buffer. The cells were then resuspended in DNA staining buffer as described above. Cell cycle profiles were modeled by using ModFit software (Verity Software, Topsham, ME).
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FIG. 1. CypA is not required for Vpr-mediated cell cycle arrest. (A) Cell cycle analysis of CypA+ and CypA/ Jurkat cells infected with pHR-VPR, encoding Vpr and GFP, or the control vector, pHR-GFP, encoding GFP only. Vector-infected cells were analyzed 24 h postinfection for DNA content and, separately, for GFP expression, using flow cytometry with the Modfit software package (Verity Software House, Inc., Topsham, Maine). Relative G1, S, and G2/M distributions as well as infection rates are indicated. "Percent infected" indicates the percentage of GFP-positive cells. The results are representative of two different experiments. (B) CypA expression in Jurkat cells. Lysates of CypA/ and CypA+ were subjected to Western blot analysis with anti-CypA antibody to verify the lack of CypA expression in CypA/ cells.
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FIG. 2. CypA is not required for Vpr-induced cell cycle arrest in the context of HIV-1 infection. Vpr was introduced by infection with replication-competent HIV-1NL4-3. The isogenic, Vpr-negative mutant, HIV-1NL4-3vprX, was used as a negative control. Infections of CypA+ and CypA/ cells were analyzed at 4 (A) and 7 (B) days postinfection by simultaneous intracellular p24 and DNA content staining with propidium iodide. The p24-positive (infected) and -negative (uninfected) cells from the cultures were analyzed by flow cytometry for DNA content after being gated based on p24 status. Relative G1, S, and G2/M distribution as well as infection rates are indicated.
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In agreement with the previous finding, we found that Vpr efficiently coprecipitated with CypA (Fig. 3A, lane 5). In contrast, both Vpr(P35N) and Vpr(P35A) were impaired in their abilities to coprecipitate with CypA, as evidenced by extremely faint Vpr bands (Fig. 3A, lanes 3 and 4). Vpr(R80A) also failed to coprecipitate with CypA, as indicated by the absence of a detectable Vpr band (Fig. 3A, lane 2). The blot shown on the top panel of Fig. 3A was then stripped and reprobed with anti-CypA antibody in order to verify that equal amounts of CypA had been immunoprecipitated in experiments 1 through 6 (Fig. 3A, second blot). Analysis of the steady-state levels of Vpr by Western blotting of input cell lysates (Fig. 3A, third blot from the top, lanes 2' to 5') revealed that all Vpr mutants were expressed at comparable or higher levels than wild-type Vpr.
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FIG. 3. Coimmunoprecipitation of Vpr with CypA. (A) 293FT cells were transfected with the indicated lentiviral vectors, and a transfection efficiency of 95% was recorded. Twenty-four hours posttransfection, cells were lysed and anti-CypA antibody was added to lysates. Coimmunoprecipitation with protein A/G agarose beads was carried out at 4°C overnight. Samples were then washed, boiled, and analyzed by sodium dodecyl-sulfate polyacrylamide gel electrophoresis and Western blotting. HA-tagged Vpr was detected using anti-HA antibodies. CsA was added to a final concentration of 2.5 µM following transfection of cells with pHR-VPR. The blot shown in the upper panel was stripped and reprobed with anti-CypA antibody to ensure that comparable amounts of CypA had been immunoprecipitated in lanes 1 to 6 (lower panel). Cell lysate inputs were analyzed, prior to immunoprecipitation, for levels of HA-Vpr, CypA, and actin, as indicated. (B) Vpr steady-state levels in CypA/ Jurkat cells are not compromised by mutation of proline-35 or incubation with CsA (lanes 1 to 5). The steady-state level of Vpr protein was examined in parallel in Jurkat CypA+ cells (lane 6).
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To further explore the specificity of Vpr-CypA interaction, we performed parallel coimmunoprecipitation experiments in which cells were cultured in the presence of 2.5 µM CsA. CsA binds to CypA and competitively inhibits the interaction between p24 Gag and CypA (9, 18, 30). CsA incubation did not impair the steady-state levels of Vpr in the cells, as evidenced by Western blotting of input lysate (Fig. 3A, third blot from the top, compare lanes 5' and 6'). CsA incubation, however, abolished the interaction between CypA and Vpr (Fig. 3A, top blot, compare lanes 5 and 6).
Expression of wild-type or Vpr mutants in CypA/ Jurkat cells further demonstrated that CypA is dispensable for the steady-state levels of Vpr expression (Fig. 3B, lanes 2, 4, and 5). CypA/ Jurkat cells presumably contain all cyclophilins other than CypA. Thus, it is formally possible that Vpr may interact with other cyclophilins, and this, in turn, may compensate for the absence of CypA. Since CsA inhibits all known cyclophilins, we asked whether incubation of CypA/ cells with CsA would affect the levels of Vpr expression. As shown in Fig. 3B (compare lanes 2 and 3), CsA did not appreciably affect the steady-state level of Vpr. The Vpr expression level in CypA/ cells was similar to that obtained in CypA+ cells (Fig. 3B, compare lanes 2 and 6) when tested in parallel. Thus, we conclude that the presence of CypA is not required for efficient expression of Vpr. We also conclude that even though CsA potently inhibits the Vpr-CypA interaction, this interaction is dispensable for efficient expression of Vpr.
The ultimate goal of the present study was to establish the requirement of CypA toward Vpr-induced G2 arrest. The availability of Vpr mutants defective for CypA binding, as well as the pharmacological inhibitor CsA, allowed us to ask whether binding to CypA could be dissociated from induction of G2 arrest. Expression of wild-type Vpr and Vpr(P35N) induced dramatic G2 arrest in CypA+ cells as well as in CypA/ Jurkat cells (Fig. 4; 85.8% and 60.1%, respectively). Addition of CsA to the cultures did not significantly change the G2 arrest levels (70.3% in CypA+ and 56.7% in CypA/ cells, respectively). Vpr(P35N) also induced G2 arrest (52.7%) in CsA, although with slightly decreased efficiency compared with wild-type Vpr. In CypA/, Vpr(P35N) induced levels of G2 arrest (67.1%) comparable to those of wild-type Vpr. Incubation of cultures with CsA did not significantly affect G2 arrest by Vpr(P35N) (45% in CypA+ and 65% in CypA/ cells). Therefore, binding to CypA is not required for the induction of G2 arrest by Vpr.
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FIG. 4. Induction of G2 arrest by Vpr and Vpr(P35N) and failure of CsA to inhibit Vpr function. CypA+ (A) or CypA/ (B) Jurkat cells were mock infected or infected with pHR-GFP, pHR-VPR, or pHR-VPR(P35N) and then subdivided into two cultures, which were incubated in the presence or absence of 2.5 µM CsA, respectively. Cells were analyzed 48 h postinfection for DNA content and, separately, for GFP expression using flow cytometry. Relative G1, S, and G2/M distributions as well as infection rates are indicated.
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The concentration of CsA used in our experiments was 2.5 µM. We find that this concentration of CsA effectively inhibits CypA-Vpr binding. This concentration is well below the 50-µg/ml (equivalent to 41.6 µM) CsA concentration used by Zander and colleagues (34) when they observed loss of Vpr stability in cells treated with this CypA inhibitor. We reason that, since genetic removal of CypA failed to inhibit Vpr function or stability, the effects observed with 50 µg/ml CsA may be due to other effects of CsA which are CypA independent. For example, high concentrations of CypA may be cytotoxic. A precedent for the existence of an additional, ill-understood effect of CsA stems from the observation that CsA inhibits the infectivity of progeny HIV-1 virions in producer cells by a mechanism that is independent of CypA inhibition (18, 30).
Since CsA is thought to inhibit all known cyclophilins, our observations combining the presence of CsA and the genetic elimination of CypA suggest that cyclophilins other than CypA appear to also be dispensable for Vpr expression and induction of G2 arrest.
We conclude that while in vivo binding between Vpr and CypA is clearly detectable, this binding is not necessary for the stability of Vpr or its ability to induce G2 arrest. The interaction between Vpr and CypA is highly intriguing and should be further investigated as a potential modulator of virus-host interactions.
This work was supported by NIAID grant AI49057 to V.P. J.L.A. is supported by a Training Program in Microbial Pathogenesis, NIAID T32 AI055434. E.S.Z. is supported by NIH Genetics Training Grant T32 GM07464.
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