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Journal of Virology, November 2006, p. 10534-10541, Vol. 80, No. 21
0022-538X/06/$08.00+0 doi:10.1128/JVI.01172-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, The Pennsylvania State University College of Medicine, Hershey, Pennsylvania
Received 6 June 2006/ Accepted 11 August 2006
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700 copies of the UL11 protein per particle, making it an abundant component of the tegument. Moreover, comparisons of cell-associated and virion-associated UL11 showed that packaging is selective for underphosphorylated forms, as has been reported for several other tegument proteins. Although the mechanism by which UL11 is packaged is unknown, previous studies have identified several sequence motifs in the protein that are important for membrane binding, intracellular trafficking, and interaction with UL16, another tegument protein. To ascertain whether any of these motifs are needed for packaging, a transfection/infection-based assay was used in which mutant forms of the protein must compete with the wild type. In this assay, the entire C-terminal half of UL11 was found to be dispensable. In the N-terminal half, the sites of myristylation and palmitylation, which enable membrane-binding and Golgi apparatus-specific targeting, were found to be essential for efficient packaging. The acidic cluster motif, which is not needed for Golgi apparatus-specific targeting but is involved in recycling the protein from the plasma membrane and for the interaction with UL16, was found to be essential, too. Thus, something other than mere localization of UL11 to Golgi apparatus-derived membranes is needed for packaging. The critical factor is unlikely to be the interaction with UL16 because other mutants that fail to bind this protein (due to removal of the dileucine-like motif or substitutions with foreign acidic clusters) were efficiently packaged. Collectively, these results suggest that UL11 packaging is not driven by a passive mechanism but instead requires trafficking through a specific pathway. |
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One of the smallest HSV-1 components is the lipid modified, 96-amino-acid tegument protein, UL11 (Fig. 1). All herpesviruses encode a homolog of this protein (32), but in all cases, the function is unknown. Viruses that fail to express their UL11 homolog invariably exhibit defects in maturation budding and accumulate nucleocapsids in the cytoplasm (2, 10, 22, 23, 26, 27, 48, 51, 52); hence, it is possible that this protein is a component of the budding machinery. However, it is also possible that it serves indirectly (e.g., perhaps by recruiting components of the actual machinery to the site of budding).
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FIG. 1. Sequence of the UL11 protein. The motifs that are important for membrane binding (myristylation and palmitylation) and membrane trafficking (dileucine and acidic cluster) are indicated along with the amino acid substitutions of mutants used in this study.
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The goal of the experiments described here was to ascertain which features of UL11 are needed for virion packaging. Because the critical 5' half of the UL11 gene overlaps with UL12, the product of which is essential for transport of capsids from the nucleus (50, 60), it was not feasible to construct recombinant viruses carrying the mutations of interest. For the same reason, previously described "null" mutants (2, 27) were not of use because they actually express large N-terminal fragments of UL11, which would complicate the interpretation of packaging studies. Therefore, the experiments below made use of a transfection/infection-based assay in which mutant forms of UL11 must compete with the wild type (wt) for packaging. The results suggest that packaging is not driven by a passive mechanism but instead requires transport of UL11 through a specific pathway.
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Antibodies. UL11-specific antiserum was derived from rabbits and has been described previously (25). Purified VP16- and GFP-specific antibodies (derived from rabbits) were obtained from Clontech (product no. 3844-1 and 8367-1, respectively).
UL11 constructs. All of the green fluorescent protein (GFP)-tagged UL11 derivatives used in this study have been described previously (24, 25). To produce constructs that have a different C-terminal tag, a small sequence encoding an epitope from hemagglutinin (HA [YPYDVPDYA]) followed by a stop codon was inserted in place of the gfp cassette using the flanking Asp718I and NotI sites within the various UL11-GFP constructs. To create this coding sequence, two oligonucleotides were annealed (5'-GTACCG1CTACCCGTACGACGTCCCAGACTACGCTTAGATAACTGATGC-3' and 5'-GGCCGCATCAGTTATCTAAGCGTAGTCTGGGACGTCGTACGGGTAGCG-3') that are fully complementary except for 4 nucleotides at each 5' end (producing Asp718I and NotI sticky ends).
Confocal microscopy. Vero cells were transfected with plasmids encoding GFP-tagged UL11 chimeras using the Lipofectamine 2000 reagent (Invitrogen). At 18 h posttransfection, cells were infected with HSV-1 at a multiplicity of infection (MOI) of 30, and after an additional 15 to 20 h, they were visualized using a Zeiss laser-scanning microscope with a helium-argon laser (488 peak excitation).
Quantitation of UL11 copy number. Confluent monolayers of Vero cells (eight 100-mm plates) were infected at an MOI of 0.01. At 12 to 16 h postinfection, the cells were metabolically labeled with methionine-free L-[35S]cysteine (70 µCi/ml; >1,000 Ci/mmol) in DMEM that otherwise lacked cysteine. When cytopathic effects were visible (24 to 36 h), the medium was collected and centrifuged at 2,000 x g for 10 min to remove cells and debris. Virions were pelleted from the supernatant by centrifugation at 25,000 rpm for 1.5 h in an SW28 rotor and purified in a 5 to 15% Ficoll gradient, as described previously (54). Equal amounts of purified virions were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) in 8% (to detect VP5 and VP16) or 15% (to detect UL11) gels, which were subsequently dried and subjected to autoradiography with Kodak X-Omat AR5 film for 5 to 7 days to detect radiolabeled proteins. PhosphorImager analysis was also performed to quantitate the relative amounts of UL11, VP5, and VP16. To ensure that the correct bands were identified, samples of the three proteins were immunoprecipitated from [35S]cysteine-labeled, infected-cell lysates (1/5 of a 100-mm plate) as described previously (61) and loaded on the gels to serve as markers. To calculate UL11 copy number, raw PhosphorImager readings for UL11, VP5, and VP16 were first normalized by dividing by the number of cysteines in each protein (4, 25, and 6, respectively). Normalized VP5 and VP16 readings were divided by their known copy numbers (960 and 1,647, respectively) to give values that represent normalized PhosphorImager units/copy of protein, and the normalized UL11 reading was divided by those values to reveal the number of UL11 proteins per virion.
Analysis of UL11 phosphorylation. Confluent monolayers of Vero cells (one 35-mm plate) were infected at an MOI of 30. At 5 h postinfection, cells were starved for 15 min in cysteine-free, methionine-free DMEM and then metabolically labeled for 3 h with 85 µCi/ml (>1,000 Ci/mmol) of EXPRE35S35S protein labeling mix (Perkin-Elmer). UL11 proteins were immunoprecipitated from cell lysates prepared with radioimmunoprecipitation assay buffer containing protease inhibitors (Sigma; product no. P8340). Collected proteins (still on the protein A-agarose beads) were either left untreated or were treated with 100 U of lambda protein phosphatase (New England Biolabs) for 1.5 h in the absence or presence of the phosphatase inhibitors sodium vanadate (200 µM) and NaF (50 mM). The labeled UL11 proteins were then separated by SDS-PAGE in 15% gels and quantitated using a Phosphorimager.
Analysis of UL11 packaging. To compare the relative levels of packaging for wt and mutant derivatives of UL11, a transfection/infection-based assay was developed. Semiconfluent monolayers of Vero cells were transfected with UL11-GFP expression vectors (2 to 20 µg of DNA per 100-mm plate for each construct) using Lipofectamine 2000 (Invitrogen). Human melanoma (A7) cells, which are much more readily transfected than Vero cells, were found to be unsuitable for the packaging assay since they release free GFP into the medium, presumably due to membrane blebbing (data not shown). To ensure equal expression levels, each vector was titrated prior to the start of the experiment. At 18 h posttransfection, the cells were infected at an MOI of 30, and after an additional 22 h, the medium was collected and cell debris was removed, as described above. Extracellular virions (in 8 ml) were purified by centrifugation (1 h at 26,000 rpm in an SW41 rotor) through a 30% (wt/vol) sucrose cushion (1.7 ml). To examine the expression levels, infected-cell lysates were prepared by scraping the monolayers into PBS, pelleting at 2,000 x g for 10 min, and adding sample buffer. The cell lysates and virions were separated by SDS-PAGE in 12% gels and analyzed by Western blotting using antibodies specific for GFP (to detect UL11-GFP chimeras) and VP16 (to ensure equal loading of samples). Using densitometry, the packaging efficiency was quantitated by dividing the amount of UL11-GFP protein in the medium by the amount in the cell lysate (both normalized for VP16). To ensure that the Western blots were in the linear range of the assay, different amounts of each sample (e.g., 1/10, 1/5, and 1/2 of the total) were loaded onto the gels. The method of Western blotting was chosen over radiolabeling-immunoprecipitation assays because it was less expensive and produced fewer interfering background bands.
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FIG. 2. Determination of UL11 copy number. Equal amounts of radiolabeled, gradient-purified HSV-1 virions were separated by SDS-PAGE on 8% and 15% polyacrylamide gels, and proteins were visualized by autoradiography. VP5 was identified in these preparations based on its unique size, whereas VP16 and UL11 were identified by immunoprecipitating the respective proteins from radiolabeled, infected-cell lysate using specific antibodies: anti-VP16 ( VP16) and anti-UL11 ( UL11). All three proteins were quantitated using PhosphorImager analysis and normalized for the number of cysteines in each protein.
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TABLE 1. Average number of UL11 molecules per virion
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FIG. 3. Phosphorylation state of UL11 in purified virions. (A) Determination of which UL11 species are packaged. Proteins from gradient-purified virions were separated by SDS-PAGE on 15% polyacrylamide gels alongside infected-cell lysate, electrotransferred onto nitrocellulose membranes, and then analyzed by Western blotting using UL11-specific antiserum. The arrowhead denotes the slowest-migrating UL11 species which is present in infected-cell lysate, but not in purified virions. (B) Analysis of UL11 phosphorylation. Infected Vero cells were metabolically labeled with [35S]methionine/cysteine for 3 h and lysed. UL11 protein was immunoprecipitated and treated with phosphatase for 1.5 h in the absence or presence (+ inh.) of inhibitors. Proteins were then separated by SDS-PAGE on 15% polyacrylamide gels and analyzed by autoradiography and PhosphorImager analysis.
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TABLE 2. Phosphatase treatment of UL11 species
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Preliminary experiments revealed that trans-expressed UL11 is indeed competitive for virion packaging, and the efficiency was the same whether the C-terminal tag was GFP or an epitope from HA (data not shown). Packaging was found to increase proportionally with increased levels of expression (Fig. 4A); however, densitometry measurements revealed that at low levels, the Western blot assay ceased to be linear. Therefore, all of the UL11-GFP derivatives used in this study were titrated to express at high levels and in equal amounts (data not shown). Moreover, antibodies specific for UL11 were not used since alterations in the short (96 amino acids) UL11 sequence seemed likely to eliminate epitopes and adversely affect the assay.
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FIG. 4. UL11 packaging assay. (A) Vero cells transfected with wild-type UL11.GFP were infected with HSV-1 at 18 h posttransfection. After another 22 h, extracellular virions were purified from the medium by centrifugation through a 30% (wt/vol) sucrose cushion. Virion and infected-cell lysates were separated by SDS-PAGE in 12% gels and analyzed on Western blots using either anti-GFP serum (to detect UL11-GFP chimeras) or anti-VP16 serum (as a harvesting and loading control). (B) Packaging of a UL11 truncation mutant. Vero cells were transfected with the indicated UL11-GFP constructs or GFP alone and subsequently infected with HSV-1. The cell lysate and medium were then harvested and analyzed as described for panel A. (C) Packaging efficiency. Using densitometry, packaging efficiency was quantitated by dividing the amount of UL11-GFP protein in the medium (normalized for VP16) by the amount in the cell lysate (normalized for VP16). In each experiment, the wt UL11-GFP construct was set at 100% packaging efficiency. Shown is the average of four independent experiments.
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51-96, Myr().UL11, UL11.CCC(), UL11.AC(), UL11.nefAC, UL11.furAC, and UL11.L18A/I19A (Fig. 1). Because these were previously characterized in cells that expressed no other viral proteins (24), it was important to ascertain whether their subcellular locations are altered in the context of an infection. To address this, transfected Vero cells were infected with HSV-1 and subsequently visualized by confocal microscopy. For the most part, all of the constructs exhibited the expected patterns (Fig. 5) (data not shown). For instance, wt UL11, UL11.
51-96, UL11.AC(), UL11.nefAC, UL11.furAC, and UL11.L18A/I19A localized strongly to a perinuclear location previously identified as Golgi apparatus related (24), whereas Myr().UL11 and UL11.CCC() failed to accumulate in this region of the cell. In addition, the UL11.AC() and UL11.L18A/I19A constructs accumulated on the plasma membrane (Fig. 5), presumably due to their inability to be efficiently retrieved from the cell surface during plasma membrane-to-Golgi apparatus trafficking (24). The only difference found by microscopy was the appearance of wild-type UL11-GFP on the nuclear membranes of infected but not transfected cells (Fig. 5) (data not shown). This nuclear targeting, which has been observed previously by means of immunofluorescence in fixed cells (1), was abolished by removing either the acidic cluster or dileucine motif, suggesting that these sequences provide UL11 with nuclear targeting specificity in Vero cells, presumably through interactions with other viral proteins.
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FIG. 5. Localization of UL11-GFP derivatives in HSV-1-infected cells. Vero cells transfected with the indicated constructs were infected with HSV-1 at 18 h posttransfection, and after an additional 15 to 20 h, the cells were visualized by confocal microscopy.
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51-96) and examined in the packaging assay. Unlike GFP, which was not detected within extracellular virions, UL11.
51-96 was packaged to almost the same level as wt UL11 (Fig. 4B and C). This finding suggests that all information required for packaging is contained within the first half of the protein. The small reduction observed with UL11.
51-96 is likely the result of having GFP positioned much closer to the packaging signals, but this hypothesis was not tested further. The N-terminal half of UL11 contains two sites that are modified with fatty acids, and these work together to enable binding to Golgi apparatus-derived membranes. Cotranslational addition of myristate enables weak but nonspecific binding to membranes, while the subsequent addition of palmitate (following the initial membrane-binding event) enables accumulation in a perinuclear compartment (24). While it seemed likely that proper targeting would be needed for packaging, it was possible that interactions with another viral protein (e.g., UL16) would enable UL11 to be packaged in a membrane-independent manner. To address this, mutants defective for one or both modifications [UL11.CCC() and Myr().UL11, respectively] were tested, and these failed to be packaged in an efficient manner (Fig. 6A and B). Although this suggests that UL11 must be on Golgi apparatus-derived membranes to be packaged efficiently, a small but reproducible amount of Myr().UL11 was incorporated at a level above that seen with GFP.
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FIG. 6. Analysis of membrane-binding mutants. (A) Packaging was measured as described in the legend to Fig. 4B. (B) Packaging efficiency was calculated as described in the legend to Fig. 4C. Shown is the average of three independent experiments.
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FIG. 7. Analysis of membrane-trafficking mutants. (A) Packaging was measured as described in the legend to Fig. 4B. (B) Packaging efficiency was calculated as described in the legend to Fig. 4C. Shown is the average of three independent experiments.
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Limitations of the transfection/infection assay.
The mixed population of UL11 species inherent in the assay raises at least three unanswered questions. First, does wild-type UL11 assist in the packaging of any of the trans-expressed mutants or is it truly just a competitor? So far, no evidence for interactions among UL11 molecules has been observed in GST-UL11 pull-down experiments (25) or in yeast two-hybrid assays (56), but a multimerization domain could await discovery. Second, does trans-expressed UL11-GFP reduce the packaging of virus-encoded UL11 (i.e., is there a maximum of
700 molecules of UL11 permitted per virion)? This is a difficult question to answer because most virions produced in the assay come from untransfected Vero cells, and these create a large background that obscures the analysis of the small virion population that contains UL11-GFP. One way to address this would be to isolate and infect cell lines that express different levels of UL11-GFP. Third, do any of the mutants have a dominant-negative effect on virus assembly and release? Again, the large background of virions produced by untransfected cells makes this question difficult to address, but it needs to be kept in mind for those mutants that exhibit reduced levels of packaging. In spite of these uncertainties, the assay has provided much information regarding the mechanism of UL11 packaging.
Requirements for UL11 packaging.
All of the information required for packaging is present within the first half of UL11. This region contains determinants for membrane binding, intracellular trafficking, and interaction with UL16 (7, 24, 25). Whether the second half of the protein is entirely dispensable for infectivity remains to be seen. Previously constructed "null" mutants still express the first
30% of the protein and exhibit a 1,000-fold reduction in the release of extracellular virions (2, 27). Thus, it will be of interest to learn whether infectivity is normal when only the second half of the gene is missing and is further reduced when a true null mutant is created.
Multiple sequence motifs within the first half of UL11 were found to have functions in packaging. N-terminal myristylation is required for membrane binding (7), and not surprisingly, this modification was also found to be critically important for packaging. Nevertheless, a small, yet reproducible, fraction of Myr().UL11 was found in extracellular virions. This is likely the result of an interaction with other viral components (e.g., capsid-associated UL16), rather than a nonspecific incorporation resulting from overexpression, because GFP-only molecules were not packaged when produced at the same level.
Palmitylation was also found to be important for UL11 packaging. This modification adds a 16-carbon, saturated fatty acid to cysteine residues, usually near the N or C termini of target proteins (45). Similar to various cellular and viral proteins, including UL51 of HSV-1 (40), palmitylation of UL11 is required for proper targeting to Golgi apparatus-derived membranes (24). Thus, the reduced packaging of UL11.CCC() is most likely the result of not accumulating at the site of virus budding. Interestingly, palmitylation has also been found to be important for the targeting of many cellular (e.g., CD4, G proteins, and Src family kinases) and viral (e.g., HIV-1 Gag) proteins to detergent-resistant, lipid-raft domains within various membrane compartments (4, 17, 30, 34, 59). In addition to serving as sites for signal transduction events, these locations are thought to function as platforms for virus assembly and budding (12). Although HSV-1 has not been reported to assemble on detergent-resistant, lipid-raft domains, it is possible that palmitylation enables UL11 to target specifically to raft domains at, or en route to, the site of budding. Studies are under way to determine whether or not UL11 associates with rafts when expressed by itself or with other virion components.
The most striking findings from this study were seen when the membrane-trafficking motifs in the first half of UL11 were altered. In particular, packaging failed with the acidic cluster deletion mutant but was enhanced with the LI mutant. These results are particularly interesting because both mutants accumulate at a perinuclear location that resembles that for the wild type. Although it is possible that the acidic cluster mutant has a structural defect that merely precludes packaging, the ability of foreign acidic clusters of different sequences (furAC) and/or lengths (nefAC) to restore virion incorporation argues against that hypothesis. Moreover, loss of the interaction with UL16 does not explain the phenotype because constructs that have foreign acidic clusters or lack the LI motif are readily packaged even though they also are unable to participate in this interaction (24, 25).
Because acidic clusters and LI motifs are known to be involved in membrane trafficking (6, 21, 47, 58), it is possible is that UL11 must traverse a particular pathway, perhaps by way of the plasma membrane, as a prerequisite to packaging. This pathway may enable the formation of essential protein-protein interactions or posttranslational modifications. In this model, UL11 has two available pathways it can enter, depending upon which trafficking signal is recognized by the sorting machinery. Recognition of the acidic cluster would lead to virion packaging, while recognition of the LI motif would serve another purpose. Hence, loss of the acidic cluster would block packaging and loss of the LI would enhance it by eliminating the competing pathway.
Precedence for dual-pathway trafficking is provided by the HIV-1 Nef protein, which has several similarities to UL11. Nef is small (205 residues), is peripherally bound to membranes via myristate (but not palmitate), has dileucine and acidic cluster motifs for trafficking between the trans-Golgi network and the plasma membrane, and has an affinity for lipid rafts (15). Unlike UL11, it is quite clear why Nef travels to the plasma membrane: to downregulate cellular surface proteins, most notably CD4 (the receptor for HIV-1) and major histocompatibility complex class I (MHC-I [needed for immune surveillance]). The mechanisms by which these two tasks are accomplished are different (15). After binding CD4, the dileucine motif of Nef links the complex to clathrin-mediated endocytic machinery (18, 19, 46), thereby sending the proteins down a pathway for degradation in lysosomes. In contrast, after binding MHC-I, the acidic cluster is recognized by PACS-1, a protein that in turn links the complex to clathrin adaptors and results in downregulation to the trans-Golgi network (5, 13, 43, 58). With this in mind, it is easy to imagine that UL11 might have a role in downregulating viral or host proteins from the cell surface, with one pathway leading to the site of maturation budding.
Although the experiments described here represent the first packaging analyses for a UL11 homologue, the importance of endocytosis for the packaging of other herpesvirus proteins has been considered in a variety of studies. Some of these have shown that endocytosed proteins can be packaged, but this route is not essential. A few examples of this are provided by HSV-1 gB (14) and pseudorabies virus gE and Us9 (8, 9). However, there are other examples of viral proteins for which endocytosis appears to be required for packaging. Examples of this are gE from varicella-zoster virus (28, 33) and gB from human cytomegalovirus, for which an acidic cluster motif is required (44, 55). Further studies of the trafficking pathways used by herpesvirus proteins are needed to provide mechanistic explanations for these differences.
Phosphorylation states of UL11. Although the proteins of the tegument generally exist in multiple phosphorylated forms, evidence provided here and elsewhere shows that only the underphosphorylated species are found in purified virions (16, 20, 31). Combined with data showing that phosphorylation promotes dissociation of tegument proteins following entry, a model has been proposed in which HSV-1 utilizes phosphorylation as a reversible mechanism to assemble and dissociate the tegument at different stages of viral replication (35, 36).
The acidic cluster of UL11 (Fig. 1) contains the major site of phosphorylation (24), and it is possible that use of this serine would be inhibitory for packaging. Indeed, the ability of the nefAC chimera to be packaged even though it lacks this residue is consistent with the proposed model. However, at least one other site of phosphorylation must exist in UL11 (24), and this might be the controlling residue. Alternatively, it is possible that fully phosphorylated forms are not actually excluded from packaging but instead are recognized by a phosphatase within the virion. Once the other site or sites of phosphorylation are identified in UL11, it will be interesting to see whether substitutions that mimic constitutive phosphorylation (e.g., serine-to-glutamic acid changes) will interfere with packaging or not.
This work was supported by NIH grants to J.W.W. (CA47482) and R.J.C. (CA42460). J.S.L. was supported by NIH training grant CA60395.
Published ahead of print on 23 August 2006. ![]()
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