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Journal of Virology, October 2006, p. 10218-10228, Vol. 80, No. 20
0022-538X/06/$08.00+0 doi:10.1128/JVI.00375-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Laboratory of Virology, Rheumatology and Immunology Research Center, Centre de Recherche du CHUL and Department of Medicine, Laval University, Québec, Qc, Canada,1 Laboratory of Cellular and Developmental Genetics, CREFSIP, Department of Medicine, Laval University, Québec, Qc, Canada2
Received 22 February 2006/ Accepted 18 July 2006
| ABSTRACT |
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| INTRODUCTION |
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Molecular, biological, and immunological analysis between various isolates has led to the subdivision into HHV-6 variants A and B (1). Primary HHV-6B infection is associated with exanthem subitum (76), but a pathological role for HHV-6A is still unclear. Although HHV-6A and HHV-6B are closely related, there is no genetic gradient between them, and recombinant viruses have never been detected (16, 32). Interestingly, the most variable region between variants of HHV-6 is observed within the immediate-early A (IE-A) locus and could account for the diverse biological properties between these viruses (16, 32). The HHV-6 IE-A locus includes two genetic units termed IE1 and IE2, corresponding to open reading frames U90/U89 and U90/U86, respectively. We have previously characterized the IE1 variant B (26) and IE2 variant A (27) proteins translated from spliced transcripts of the IE-A locus.
It has been reported that the HHV-6 IE2 protein is a potent transcriptional activator of heterologous promoters (19, 27). Indeed, the HHV-6 open reading frame U86 gene product was found to transactivate the human CD4 promoter (19). Moreover, cotransfection experiments in T cells indicated that IE2 variant A can induce the transcription of complex promoters, such as the one present in the HIV long terminal repeat (LTR), as well as simpler promoters whose expression is driven by a unique set of responsive elements (cyclic AMP-responsive element, NF-AT, and NF-
B) (17, 27). Finally, the C-terminal domain encompassing the final 436 residues of IE2A was shown to bind a DNA fragment containing the transcription initiation site, TATA box, and upstream sequence of the IE-A promoter (57).
Clues pertaining to the nature of HHV-6 IE2 functional domains can be derived from the numerous studies of human cytomegalovirus (HCMV) immediate-early protein IE2. HCMV, like HHV-6, is a betaherpesvirus and shares amino acid sequence similarities, immunological cross-reactivity, and overall gene organization with HHV-6 (45, 53, 78). HCMV gene UL122, coding for protein IE2, is a positional homologue of HHV-6 open reading frame U86 (55), which codes for the C-terminal portion of HHV-6 IE2. The similarity between HCMV IE2 and the carboxy-terminal region of HHV-6 IE2 is 45% (55). HCMV IE2 is an 86-kDa protein whose biological functions are well defined and include transactivation of heterologous promoters (60), repression of its own promoter (28), association with the viral DNA replication compartment (3), blocking of cell cycle progression (75), and modulation of apoptosis (80).
Viruses have evolved numerous mechanisms to overcome host defenses and to use the host biological pathways to the virus's advantage. One type of virus-host interaction that is well established and widespread is regulation of viral protein function by posttranslational modification systems, such as phosphorylation, glycosylation, and ubiquitinylation. Sumoylation is another host cell posttranslational modification system that has been characterized to a greater depth in recent years. While not yet completely understood in terms of functional effects, sumoylation appears to control protein activity and/or intracellular location.
Sumoylation is the process of covalently attaching a small ubiquitin-related modifier (SUMO) moiety to a target protein. In humans, at least four SUMO proteins can be found, with 47% amino acid identity between SUMO-1 and SUMO-2 and 95% amino acid identity between the closely related SUMO-2 and SUMO-3. Although there seem to be significant differences between SUMO-1 and SUMO-2/3 distribution, availability, and substrates, there are still few studies so far on SUMO-2/3. SUMO-1 is itself a 101-amino-acid polypeptide with sequence relatedness to ubiquitin (44). The mechanism of conjugation of SUMO-1 to various targets is somewhat analogous to that of ubiquitination. It involves an activating E1 enzymatic heterodimer (Uba2/Aos1) (13, 23, 56), a conjugating E2 enzyme (Ubc9) (14, 22, 36, 68), and one of the many SUMO-1 E3 ligases, such as PIASy or RanBP2 (58, 62). In contrast to ubiquitination, however, SUMO-1 conjugation does not appear to target proteins to proteasomal degradation; rather, it affects the ability of modified proteins to interact with other cellular factors. Effects of SUMO-1 conjugation on target proteins include targeting to specific subcellular compartments, alteration of functional activity, and regulation of ubiquitin-mediated proteolysis (29).
Besides the many known cellular substrates of sumoylation, such as RanGAP1 (48), I
B
(12), primary biliary cirrhosis autoantigen Sp100 (72), promyelocytic leukemia protein (17), tumor suppressor p53 protein (24, 61), and homeodomain-interacting protein kinase 2 (39), there are more and more viral protein targets of SUMO-1 currently being identified. The first known viral targets were HCMV IE1 and IE2 proteins (30, 52). Promoter transactivation by HCMV IE2 is strongly reduced in SUMO-1 conjugation-defective mutants, suggesting a functional relevance of the SUMO-1 conjugation pathway in the biological activity of IE2 protein (30). However, it was subsequently demonstrated that sumoylation of HCMV IE2 is not essential for virus growth in cultured HF cells (46). The consequence of sumoylation for HCMV IE1 is not yet clearly understood; however, it was shown that a sumoylation-defective IE1 mutant has reduced levels of the HCMV IE2 transcript and impaired viral replication (54). Sumoylation of Epstein-Barr virus immediate-early protein Zta, encoded by the BZLF1 gene, leads to reduced activity of this transactivator on specific promoters (2). However, another immediate-early Epstein-Barr virus transactivator, Rta (encoded by the BRLF1 gene), shows increased transactivating activity upon SUMO-1 conjugation (11).
During the ongoing work to characterize the immediate-early proteins of HHV-6, our laboratory reported that HHV-6B IE1 is also a target of SUMO-1 conjugation (26), a finding subsequently confirmed for HHV-6A IE1 in another laboratory (71). SUMO-1 overexpression leads to increased levels of IE1 expression through an undefined mechanism (25, 71).
Because of the growing numbers of immediate-early herpesviral transactivators being shown to be subject to sumoylation, we investigated the possibilities of SUMO conjugation to HHV-6 IE2. This hypothesis was further supported by the homology between IE2 and a known sumoylation target, HCMV IE2. SUMO-1 conjugation to target proteins involves the carboxy-terminal glycine residue (G97) of SUMO-1, the Ubc9 conjugating enzyme, and a lysine (K) residue on the target protein. The sumoylation consensus motif is generally identified as a lysine residue immediately preceded by a hydrophobic amino acid (
) and followed by a variable residue (X) and a glutamic acid residue (E) (17, 37, 39). This widely accepted consensus motif (
KXE) is not, however, inclusive of all described SUMO-1 conjugation sites (9, 35, 39). HCMV IE2 is SUMO-1 modified on lysine residues 175 and 180, both described by the conjugation consensus motif
KXE (4, 30). Computer analysis of the HHV-6 IE2 sequence revealed no typical consensus sumoylation sites.
Using a yeast two-hybrid system, we screened a human Jurkat T-cell line cDNA expression library for proteins that could interact with HHV-6 IE2. We report that HHV-6 IE2 and Ubc9 physically interact together. Previous research indicates that a SUMO-1 or Ubc9 interaction in the two-hybrid assay is often indicative of SUMO-1 conjugation to the interacting protein (50). Our results suggest that Ubc9 represses IE2's transactivating activity in a SUMO-independent fashion. We also determined that Ubc9 does not alter the levels of IE2 expression or the nuclear localization of IE2. These results suggest a new way by which cells or viruses can regulate gene transcription as well as further contribute to our knowledge of the complex relation that exists between herpesviruses and the sumoylation pathway.
| MATERIALS AND METHODS |
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Plasmid generation. To generate the LexA-IE2 N-terminal fusion construct (pHybLex-IE2 1-720, encoding amino acids 1 to 720 of IE2), mRNA from HHV-6-infected HSB-2 cells was reverse transcription-PCR amplified with primers matching the N-terminal region of IE2 (forward primer, 5'-taggtacccacc ATG GAG CCA GCA AAA C-3'; reverse primer, 5'-tctgactcgag AGC CAT GGT GCA ACT TT-3'; adapters not homologous with the viral sequence are indicated by lowercase script, and KpnI and XhoI restriction sites are underlined) and ligated in frame into KpnI/XhoI-digested pHybLex/Zeo vector (Invitrogen, Carlsbad, CA). Similarly, to generate the LexA-IE2 C-terminal fusion construct (pHybLex-IE2 925-1466), infected-cell mRNA was reverse transcription-PCR amplified with primers matching the C-terminal region of IE2 (forward primer, 5'-gagctc AAA GCC TCC AGC AGA GCC TCC AG-3'; reverse primer, 5'-gtcgacag TTA ACA TTT TGA AAG TGT AC-3'; adapters not homologous with the viral sequence are indicated by lowercase script, and SacI and SalI restriction sites are underlined), ligated in pCR3.1 cloning vector (Invitrogen), and then subcloned in frame into SacI/SalI-digested pHybLex/Zeo vector. Two different deletion mutants of the C-terminal portion of IE2 were generated by digestion of pHybLex-IE2 925-1466 with the restriction enzymes PstI or AccIII/SalI (Promega, Madison, WI), yielding, respectively, plasmids pHybLex-IE2 925-988 and pHybLex-IE2 925-1233. In order to further map the interaction region between IE2 and Ubc9, the following constructs were generated by single-base mutagenesis following the QuikChange site-directed mutagenesis kit (Stratagene, La Jolla, CA) instructions. Plasmid pHybLex-IE2 925-1466 was mutated to pHybLex-IE2 925-1176 using the stop codon mutagenic primer 5'-GAA CAA TCC AAT CAT TCC TAA AAC GCC ATT GAT GAA G-3' and its complementary oligonucleotide (the mutated base is underlined). Constructs pHybLex-IE2 925-1131, pHybLex-IE2 925-1083, and pHybLex-IE2 925-1037 were generated using, respectively, primers 5'-CA GAT TCA AAA CAC TAA ACT ACA AAC ATG TCT TCA G-3', 5'-ACA CAA TTT TAC TAT TAG TCT TCC AGA ACT AGA TC-3', and 5'-TCT CAC TGT CGA AAT TAA CCA GAT TCA CTG ACC-3' (the mutated base is underlined) and their complementary oligonucleotides.
Library-isolated two-hybrid prey plasmid pYESTrp-Ubc9 was mutated into non-SUMO-1-conjugating pYESTrp-Ubc9 C93S by using mutagenic primer 5'-CG GGG ACA GTG AGC CTG TCC ATC TTA G-3' and its complementary oligonucleotide (the mutated base is underlined). Furthermore, SUMO-1 was extracted from pcDNA3-6His-SUMO-1 (kind gift of R. T. Hay) by BamHI digestion and subcloned into pYESTrp (Invitrogen) to yield pYESTrp-SUMO-1. Lastly, plasmid pHybLex-Ubc9 was generated by in-frame cloning of Ubc9 cDNA from pYESTrp-Ubc9 into the EcoRI restriction site of pHybLex.
For the transactivation assays, complete wild-type HHV-6A IE2 was PCR amplified from pBK-IE2A (27) (forward primer, 5'-aggtacc GGA GCC AGC AAA ACC-3'; reverse primer, 5'-cctcgagg TTA ACA TTT TGA AAG TGT AC-3'; adapters not homologous with the viral sequence are indicated by lowercase script, and KpnI and XhoI restriction sites are underlined), ligated in pCR3.1 cloning vector, and then subcloned in frame into KpnI/XhoI-digested pcDNA4/HisMaxA vector (Invitrogen) to yield pcDNA4-IE2A. Ubc9 interaction mutant pcDNA-IE2
993-1037 was generated by directed mutagenesis of pcDNA-IE2A using mutagenic primer 5'-TGC AGC TCG ACT CCA GAG CTC ACC AGA TTC ACT GAC C-3' and its complementary oligonucleotide. Ubc9 cDNA isolated from the Jurkat library was subcloned in the EcoRI restriction site of pcDNA3.1 (Invitrogen). Construct pcDNA3.1-Ubc9 was subsequently mutated into non-SUMO-1-conjugating pcDNA3.1-Ubc9 C93S by using primer 5'-CG GGG ACA GTG AGC CTG TCC ATC TTA G-3' and its complementary oligonucleotide (the mutated base is underlined).
Finally, full-length HIV-1 Tat cDNA was subcloned from pREP-Tat (kindly provided by M. Tremblay) into the BamHI restriction site of pcDNA4/HisMaxA. Construct pcDNA3-Myc-RanGAP1 was kindly provided by S. Muller. Hemagglutinin (HA)-tagged construct pCMV-SUMO-1 was cloned as previously described (25).
Yeast two-hybrid screen. pHybLex-IE2 925-1466 plasmid was introduced into the L40 strain of Saccharomyces cerevisiae by lithium acetate transformation (15). Zeocin-resistant L40 cells were subsequently transformed with a human Jurkat cell cDNA library cloned into the pYESTrp plasmid. Protein-protein interaction led to the activation of two yeast reporter genes, LacZ and HIS3. Expression of HIS3 allowed yeast cells to grow on His-negative media, while LacZ led to ß-galactosidase expression. The screening was performed following the Invitrogen Hybrid Hunter protocol. Interactions were first selected on His-negative plates, followed by a second screen for ß-galactosidase expression. For Western blot analysis, cells were subjected to mechanical lysis with glass beads in urea-containing cracking buffer (8 M urea, 5% sodium dodecyl sulfate [SDS], 40 mM Tris-HCl, pH 6.8, 0.1 mM EDTA, 1% ß-mercaptoethanol). Expression of the bait and prey proteins was assessed by Western blotting using an anti-LexA rabbit polyclonal antibody and an anti-V5 mouse monoclonal antibody, respectively (both from Invitrogen). Plasmids coding for proteins interacting with IE2 were recovered from yeast cells by mechanical lysis with glass beads, sodium acetate precipitation, and transformation into Escherichia coli XL2-Blue ultracompetent bacteria (Stratagene). Sequencing of plasmids was performed by automated sequence analysis using the dye termination reaction in an ABI (Weiterstadt, Germany) sequencer.
Mapping of IE2 domain interacting with Ubc9. S. cerevisiae strain L40 cells were transformed with pYESTrp-Ubc9, pYESTrp-Ubc9 C93S, or pYESTrp-SUMO-1 plasmids and either pHybLex-IE2 1-720, pHybLex-IE2 925-1466, pHybLex-IE2 925-1233, pHybLex-IE2 925-1176, pHybLex-IE2 925-1131, pHybLex-IE2 925-1083, pHybLex-IE2 925-1037, or pHybLex-IE2 925-988. Cells transformed with both bait and prey plasmids were selected on Trp-negative (His-positive) zeocin media plates. Extracts were prepared following Applied Biosystems technical notes. In brief, each yeast colony was resuspended in 60 µl of lysis buffer (50 µl Tropix Galacto-Light lysis solution [Applied Biosystems, Bedford, MA], 2.5 µl 0.1% SDS, 7.5 µl chloroform) and vortexed for 10 seconds. Subsequently, 5 µl of extract was added to 67 µl of diluted Galacton (Applied Biosystems) and incubated at room temperature for 60 min. Chemiluminescence indicating ß-galactosidase activity was assayed by adding 100 µl of accelerator solution using an MLX microtiter plate luminometer (Dynex Technologies, Chantilly, VA). The chemiluminescent signal was normalized for the amount of protein (colony size) in each sample. At least eight colonies were assayed for each different transformation, and the average signal was compared to that of negative control cells cotransformed with pYESTrp-Ubc9 and pHybLex.
Immunofluorescence. HSB-2 cells were infected for 48 h with HHV-6A, fixed with cold (20°C) acetone, and incubated with various antibodies described hereafter. IE2 expression was detected with a mouse anti-IE2 monoclonal (P6H8) antibody raised against a glutathione S-transferase-IE2 fusion protein (7) and coupled to the Alexa 488 green fluorescent dye (Molecular Probes, Eugene, OR). Ubc9 expression was analyzed with a mouse anti-Ubc9 antibody (BD Biosciences, Mississauga, Ontario, Canada) followed by a rabbit anti-mouse antibody coupled to the Alexa 568 red dye (Molecular Probes). SUMO-1 was detected with a rabbit anti-SUMO-1 antibody raised against glutathione S-transferase-SUMO-1 and Alexa 568 coupled. Cells were examined on a Leitz Aristoplan epifluorescence microscope (Leica Microsystems Canada, Richmond Hill, Ontario, Canada) with 488-nm (green dye, IE2) and 568-nm (red dye, Ubc9 and SUMO-1) filters. Representative cell fields were captured using a black-and-white digital camera (Dage-MTI, Michigan City, IN) and Bioquant NOVA software (Bioquant-R&M Biometrics, Nashville, TN). The same technique was used for immunofluorescence analysis of transfected HEK293T cells.
Sumoylation assay in infected cells. HSB-2 cells were infected for 72 h with HHV-6A. Infected cells (1 x 107) were pelleted, lysed, and sonicated in a 1:3 dilution of buffer I and II containing 5 mM N-ethylmaleimide, as described previously (12). Clarified supernatants were incubated overnight with anti-IE1 (26) or anti-IE2 (7) antibodies and protein A-Sepharose beads (Pierce, Rockford, IL), followed by three washes with lysis buffer. Beads were resuspended in Laemmli buffer and boiled for 5 min. Immunoprecipitated proteins were electrophoresed, and Western blotting was carried out using anti-IE1, anti-IE2, or anti-SUMO-1 antibodies as described below.
Western blotting. For Western blot analysis, cells were washed in phosphate-buffered saline, lysed in an appropriate volume of Laemmli buffer, and boiled. Samples were electrophoresed through an SDS-polyacrylamide gel, transferred to polyvinylidene fluoride membranes, and blotted for 1 h at room temperature. After three 10-min washes with Tris-buffered saline-Tween, the blots were incubated with horseradish peroxidase-conjugated secondary antibodies for 1 h. The blots were then washed with Tris-buffered saline-Tween, and the proteins were visualized with enhanced chemiluminescence (Perkin-Elmer, Boston, MA) using a PhosphorImager system (Fuji Medical Systems, Stamford, CT). The following primary antibodies were used: P6H8 mouse anti-HHV-6A IE2, rabbit anti-HHV-6B IE1, and rabbit anti-SUMO-1 antibodies as previously described (7, 25); mouse anti-Ubc9 (BD Biosciences); mouse anti-His (Amersham Biosciences, Baie d'Urfé, Quebec, Canada); 12CA5 mouse anti-HA; and 9E10 mouse anti-Myc.
Transfections and luciferase assays. Transfections were performed using the calcium phosphate precipitation procedures. HEK293T cells were plated at 200,000 cells/well (six-well plate) the day prior to transfection. Cells were transfected with 500 ng of reporter plasmid and up to 6.5 µg of expression vectors per well and brought to a total of 7 µg of DNA per well for each condition with the pcDNA4 control plasmid. Cells were lysed 48 h after transfection. Transactivation was evaluated using pLTR-Luc (kindly provided by M. Tremblay) and p2-1900 (kindly provided by M. Fresno; described in reference 31) reporter constructs coding for the luciferase gene driven by HIV LTR and human COX-2 promoters, respectively. Luciferase activity was measured on an MLX microtiter plate luminometer (Dynex Technologies). The values obtained are means of three distinct experiments performed in duplicate and are normalized for protein concentration in each sample, as determined by a bicinchoninic acid colorimetric assay (Pierce).
Molt-3 cells were transfected by electroporation using a Gene Pulser apparatus and capacitance extender (Bio-Rad Laboratories, Hercules, CA). Briefly, 18 µg total DNA was added to 107 cells in 400 µl RPMI medium. Cells were pulsed at 0.25 kV with a 960-µF capacitance in a 0.4-cm-gap electroporation cuvette (Bio-Rad Laboratories). Cells were transferred into 10 ml of culture medium and lysed after 48 h of growth. Transactivation of reporter constructs was assayed as described above.
Cell fractionation. Transfected HEK293T cells (4 x 105) were harvested 48 h after transfection, washed in phosphate-buffered saline, and incubated for 5 min on ice in 250 µl of F buffer (10 mM Tris, pH 7.4, 10 mM NaCl, 5 mM MgCl2, and 0.5% NP-40) to which Complete protease inhibitor cocktail was added (Roche Diagnostics, Laval, Quebec, Canada). Cells were centrifuged for 5 min at 500 x g and 4°C, upon which supernatant (cytoplasmic fraction) was set aside. The remaining pellet was resuspended in 250 µl of F buffer (nuclear fraction). To each fraction was added Laemmli buffer, and samples were boiled for 5 min before SDS-polyacrylamide gel electrophoresis (SDS-PAGE) analysis.
Statistical analysis. Statistical analysis of the data, which were normally distributed, was performed using an unpaired two-tailed Student's t test. Differences between means were considered significant at a P value of <0.05. Data analysis was performed with Prism software version 4.03 (GraphPad Software, San Diego, CA).
| RESULTS |
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To map the interaction domain between IE2 and Ubc9, we generated six deletion or stop codon mutants of pHybLex-IE2 925-1466 (Fig. 1) and subjected them to a two-hybrid experiment with pYESTrp-Ubc9 formerly isolated from the Jurkat cDNA library. Double transformant colonies that grew on selective media (His negative) were assayed for ß-galactosidase activity using a chemiluminescence liquid assay. Table 1 shows positive interaction, as determined by both growth on minimal medium (His negative) and ß-galactosidase activity, for all mutants except IE2 925-988. This suggests that residues 989 to 1037 include a minimal sequence required for Ubc9 interaction.
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Next, to determine whether the SUMO-1-conjugating activity of Ubc9 is required for Ubc9 interaction with IE2, we mutated cysteine 93 of pYESTrp-Ubc9 to serine in order to remove its catalytic SUMO-1 binding residue (20, 73). The pYESTrp-Ubc9 C93S construct was assayed in the two-hybrid interaction test described above. Interaction with all previously described IE2 constructs was not significantly altered (Table 1), indicating that the sumoylating activity of Ubc9 is not required for interaction with IE2. Thus, although IE2 segment 989 to 1037 interacts with Ubc9 and Ubc9 C93S, no SUMO-1 interaction was detected with any of the IE2 constructs.
IE2-Ubc9 colocalization in infected and transfected cells. In order to confirm that the observed interaction between IE2 and Ubc9 is physiologically relevant, we examined HHV-6-infected and IE2-transfected cells by immunofluorescence for colocalization of IE2, Ubc9, and/or SUMO-1. Figure 2A shows that in HHV-6-infected HSB-2 cells, Ubc9 has a pericellular and somewhat diffuse pattern, while IE2 forms patches that were previously shown to be nuclear (27). Ubc9 colocalizes with IE2 in some of the patches. In order to confirm that IE2 is not sumoylated, we also analyzed the cellular distribution of SUMO-1. In mock-infected HSB-2 cells, the SUMO-1 signal is barely detectable. In infected cells, however, SUMO-1 forms strong nuclear dots that do not colocalize with IE2 (Fig. 2B). It was shown previously that in infected cells, SUMO-1 dots colocalize with PML nuclear bodies and HHV-6 IE1 (26). Because the possibility of other viral proteins acting as a scaffold between IE2 and Ubc9 could not be excluded, we also transfected HEK293T human epithelial cells with a wild-type IE2 construct. In transfected cells, IE2 shows a punctuate pattern that colocalizes with some of the Ubc9 patches (Fig. 2C), while IE2 and SUMO-1 do not colocalize (Fig. 2D). These data suggest that the interaction between IE2 and Ubc9 does not involve other viral proteins or SUMO-1 conjugation.
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Promoter transactivation activity. The currently known function of HHV-6 IE2 is to promiscuously promote transcriptional activation (27). Knowing that IE2 interacts with Ubc9, we next proceeded to study the effects of Ubc9 expression on promoter transactivation by IE2. We first performed transfection in Molt-3 T cells, a cell line efficiently infected by HHV-6. Cells were transfected with pLTR-Luc, a luciferase reporter plasmid driven by the HIV-1 LTR promoter, and wild-type IE2 in the absence or presence of Ubc9. IE2 is known to transactivate the LTR promoter efficiently (27, 47). The luciferase activity measured the effect of overexpressed Ubc9 on the transactivation of the promoter by IE2. Wild-type IE2 strongly transactivated the HIV-1 LTR promoter construct, while coexpression of Ubc9 partly inhibited IE2 transactivation in a dose-dependent manner (Fig. 4A). Because the sumoylation activity of Ubc9 is not required for interaction with IE2, we needed to ascertain whether the catalytic C93 residue of Ubc9 played a role in the downregulation of IE2 activity. Molt-3 cells were transfected with pLTR-Luc, wild-type IE2, and increasing quantities of the Ubc9 C93S construct. As Fig. 4B illustrates, the same dose-dependent inhibition of IE2 activity is observed when sumoylation-defective Ubc9 is overexpressed and when wild-type Ubc9 is overexpressed.
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We also generated an IE2 mutant lacking the Ubc9 interaction site (993 to 1037 region), as identified in the yeast two-hybrid assay. Transactivation of the LTR promoter by IE2
993-1037 is stronger than that by wild-type IE2 (Fig. 5G), which was expected, since the absence of a Ubc9-interacting region makes IE2
993-1037 impervious to downregulation by endogenous Ubc9. While IE2 transactivation is downregulated by Ubc9 or Ubc9 C93S coexpression, IE2
993-1037 activity is not negatively influenced by them, which demonstrates that the deleted region participates in the inhibition of IE2 function by Ubc9. These observations suggest that Ubc9 substantially inhibits heterologous promoter transactivation by IE2 and that SUMO-1-conjugating activity is not essential for this effect. Taken together with the aforementioned IE2-Ubc9 interaction, our results suggest a mechanism by which Ubc9 represses IE2 activity without involving IE2 sumoylation.
Expression and nuclear localization of IE2. In an attempt to better define the mechanism through which Ubc9 alters IE2 function, we studied the expression and localization of IE2 when coexpressed with Ubc9. Transfected HEK293T cells were fractionated into cytoplasmic and nuclear fractions and analyzed by Western blotting for IE2 and Ubc9 expression. The same samples were assayed for transactivation activity of IE2 as described previously. Figure 6 shows that although Ubc9 is overexpressed and IE2 activity is partly inhibited, IE2 levels are roughly stable and the viral protein is detected only in the nuclear fractions. Thus, IE2-Ubc9 interaction seems to be a nuclear event that does not downregulate IE2 transactivation by IE2 exclusion from the nucleus or by modulating IE2 expression at a transcriptional level.
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| DISCUSSION |
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The IE2-Ubc9 interaction site has been mapped in between residues 989 and 1037 of IE2. Analysis of a hydropathicity plot of IE2 indicates that this region is strongly hydrophilic, suggesting an external surface position after protein folding and thus a likely protein interaction site. Although many Ubc9-interacting proteins have been described already, especially assuming that all SUMO-conjugated proteins do interact with Ubc9, no simple motif has been defined for the interacting region. Even though a SUMO-interacting motif has been brought to light (70), it cannot account for sumoylation-independent interactionswith the Ubc9 C93S mutant, for instance.
The in vitro and in vivo SUMO-1 conjugation assays, the lack of IE2-SUMO-1 colocalization in immunofluorescence assays, and the absence of IE2-SUMO-1 interaction in the yeast two-hybrid system suggest that IE2 is not a suitable substrate for sumoylation. No typical
KXE SUMO-1 acceptor site could be identified in IE2, reinforcing our conclusion that unlike HCMV IE1 and IE2, HHV-6 IE1, and other immediate-early herpesvirus proteins, HHV-6 IE2 does not undergo sumoylation.
Although SUMO-1 conjugation is the principal known function of Ubc9, it was also reported to interact with proteins without leading to SUMO-1 modification. For example, Ubc9 interaction with tumor necrosis factor alpha receptor 1 and kinase MEKK1 leads to upregulation of signal transduction to NF-
B (67). In both cases, no SUMO-1 conjugation was detected, suggesting that Ubc9 is involved in ways other than through SUMO-1 association. Interaction between Ubc9 and importin 13, an importin ß-related receptor primarily involved in nuclear import, suggests an involvement for Ubc9 in nuclear translocation of cytoplasmic targets (51). Ubc9 has equally been shown to interact with a nuclear localization signal sequence of homeobox protein Vsx-1, thus mediating Vsx-1 nuclear localization (43). Vsx-1 does not appear to be sumoylated, and a C93S mutant of Ubc9 is still able to restore Vsx-1 nuclear localization in a cell line with a low level of endogenous Ubc9 (43). Ubc9 functions as a corepressor (41) or a coactivator (42) of chicken ovalbumin upstream promoter-transcription factor I as tested on two different promoters, always in a manner distinct from its SUMO-1-conjugating activity. Finally, Ubc9 interaction also suppresses the dinucleoside polyphosphate hydrolase activity of the antitumoral protein Fhit irrespective of the addition of SUMO-1 in the assays (21).
Moreover, in some cases the sumoylating catalytic activity of Ubc9 is dispensable for functional regulation of the target protein, even if the target can be sumoylated. For instance, RNA helicase A is a sumoylation target whose transactivating activity is enhanced by the interaction with Ubc9 independently of the SUMO-1-conjugating activity of Ubc9 (6). Ubc9 also binds and modulates the induction properties of glucocorticoid receptors irrespective of its ability to transfer SUMO-1 to the receptor (38). These examples demonstrate that Ubc9 activities range far beyond its role in sumoylation and suggest that regulation of transactivation is an emerging important function for this cellular protein.
Past publications show that the HCMV IE2 protein is SUMO-1 modified on lysine residues 175 and 180, both described by conjugation consensus motif
KXE (4, 30). Mutation of both residues (but not either alone) led to a dramatic decrease in transactivation of promoters, including the HIV LTR and HCMV IE1/2 promoters (30), but only a slight decrease in transactivation of Pol and cyclin E promoters (4). Moreover, transactivating activity of wild-type but not conjugation-deficient HCMV IE2 was upregulated by Ubc9 and SUMO-1 cotransfection (4). We describe here a decrease in LTR promoter-transactivating activity of HHV-6 IE2 following interaction with Ubc9. In this case, SUMO-1 conjugation does not appear to be directly involved, and exogenous SUMO-1 does not potentiate promoter transactivation by IE2.
Ubc9 and sumoylation also play a role in nucleocytoplasmic transport (reviewed in reference 59). It is believed that Ubc9 can influence the localization of proteins independently of its enzymatic function, since Ubc9 is carried inside the nucleus by transport receptor importin 13 and could act as an adapter between this receptor and diverse binding partners (51). In the absence of IE2 sumoylation, we hypothesized that the interactions between Ubc9 and IE2 may lead to impaired nuclear transport of the transactivating viral protein. However, our experiments demonstrated that nuclear levels of IE2 remain constant when Ubc9 is overexpressed, ruling out nuclear exclusion as an explanation for the reduced activity of IE2.
Alternatively, IE2 could block conjugation of SUMO-1 to cellular proteins by antagonizing Ubc9 activity, thus affecting cellular pathways where SUMO-1 modification is required for normal operation, such as NF-
B- or RanGAP1-related pathways. Our results do not provide evidence that IE2 alters sumoylation patterns in transfected cells, and sumoylation of one major SUMO-1 target, RanGAP1, was not affected.
Recently, two other cellular protein interaction partners for IE2 have been identified. The N-terminal region of HHV-6B IE2 was found to interact in yeast two-hybrid, pull-down, and coimmunoprecipitation assays with heterogenous nuclear riboprotein K and the beta subunit of casein kinase 2 (69). A potential function of heterogenous nuclear riboprotein K is in pre-mRNA processing (49), and it has been hypothesized that it created a docking platform to facilitate communication among molecules involved in gene expression and signal transduction (8). Casein kinase 2 is a multifunctional, second messenger-independent serine/threonine kinase present in the nucleus and cytoplasm of all eukaryotic cells and composed of catalytic (
) and regulatory (ß) subunits (5). The importance of both protein partners in regard to the functionality of IE2 has not been established, so it remains to be seen whether the transactivating activity of IE2 is regulated by interactions within its N-terminal domain.
Since our results show that Ubc9-conjugating activity is not required for the observed repression of IE2-transactivating activity and that IE2 is not conjugated itself, we propose that the IE2-Ubc9 interaction facilitates recruitment of corepressor molecules to the transcription complex formed by IE2 or, alternatively, that Ubc9 itself acts as a repressor to the activity of IE2. This may be a way for the virus or the cell to negatively regulate its immediate-early transactivators once initiation of viral replication is well on its way. Thus, interaction with Ubc9 could represent a new mechanism by which HHV-6 uses cellular pathways, and this study provides valuable knowledge of the biology of this virus. It also sheds light on the importance of the SUMO conjugation pathway to the biology of herpesviruses in general and provides insights on how these viruses utilize the cellular pathways to control the infectious processes.
| ACKNOWLEDGMENTS |
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This work was supported by grant 14437 from the Canadian Institutes of Health Research (CIHR) to Louis Flamand. Louis Flamand is a senior scholar from the Fonds de la Recherche en Santé du Québec.
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