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Journal of Virology, January 2006, p. 1038-1043, Vol. 80, No. 2
0022-538X/06/$08.00+0 doi:10.1128/JVI.80.2.1038-1043.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Virology, Philipps University Marburg, Robert-Koch-Str. 17, 35037 Marburg, Germany,1 Filovirus Laboratory, INSERM U412, Claude Bernard University Lyon 1, IFR 128, BioSciences Lyon-Gerland, 21 av Tony Garnier, 69365 Lyon Cedex 07, France,2 Dade Behring Marburg GmbH, Marburg, Germany3
Received 18 July 2005/ Accepted 13 October 2005
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The nonsegmented negative-sense RNA genome of MARV is 19,111 bases in length and encodes seven proteins (9). Four of these proteins (NP, VP35, L, and VP30) constitute the nucleocapsid complex (1). NP, VP35, and L are sufficient to mediate viral transcription and replication in a MARV-specific minigenome system, while the fourth component of the nucleocapsid complex, VP30, acts as a transcription activator for EBOV (17, 18, 28). Hence, the role of VP30 in the life cycle of MARV VP30 has not yet been determined. It has been reported that MARV VP30 interacts with NP-derived inclusions, indicating that VP30 might be involved in nucleocapsid maturation (16). RNA interference-based down-regulation of VP30 in MARV-infected cells resulted in significant reduction of all viral proteins, suggesting an important role for VP30 in viral replication and/or transcription (10). EBOV VP30 contains a Cys3-His motif comprising amino acids 68 to 95 which was shown to bind zinc ions. The integrity of the Zn-binding motif was crucial for the function as a transcriptional activator but not for the interaction with NP-derived inclusion bodies. Sequence comparison revealed that this motif is also present in MARV VP30 (amino acids 74 to 99) (15). The only other nonsegmented negative-strand RNA viruses possessing a fourth nucleocapsid protein are the pneumoviruses. For human respiratory syncytial virus, it was shown that the M2-1 protein serves as an elongation and antitermination factor during transcription (6, 8, 13). Interestingly, M2-1 contains a Zn finger motif similar to the motif found in VP30 which was shown to be essential for the function of the protein (12).
To study aspects of filovirus replication and transcription without biosafety level 4 containment, minigenome systems were established for MARV and EBOV (2, 11, 17, 18). However, a full-length rescue system is desirable to investigate all aspects of the viral life cycle in an authentic context. Rescue of negative-strand RNA viruses from cDNA was facilitated by using the antigenomic instead of the genomic sequence (22). Since then, full-length rescue systems have been established for several Mononegavirales (for reviews, see references 7 and 20), including EBOV (19, 26). These systems allow the specific mutation of proteins of interest (19, 26) or introduction of foreign reporter genes like enhanced green fluorescent protein (25).
In this study, we present a system which allows the recovery of infectious MARV entirely from cDNA. Using this system, the role of VP30 for the rescue of recombinant MARV was investigated.
(S. Enterlein performed this work in partial fulfillment of the requirements for a Ph.D. from the Philipps University Marburg, Marburg, Germany.)
Cloning of the full-length MARV clone.
The complete genomic sequence of MARV strain Musoke was determined and submitted as a reference sequence to GenBank (accession number DQ217792). A set of five cassettes using a pBlueScript II KS(+) backbone (Stratagene) was designed which could be combined to generate a full-length cDNA of the complete MARV antigenome termed pMARV(+). Reverse transcription (RT)-PCR with viral RNA as the template and PCR using already existing plasmids containing MARV-specific sequences were used to generate 2.1- to 7.8-kb fragments flanked by unique restriction sites (Fig. 1). All five MARV-specific plasmids were digested with the respective enzymes shown in Fig. 1 and ligated to yield pMARV(+). The correct sequence was verified by automated sequencing on a MegaBACE sequencer (Amersham). To discriminate recombinant from wild-type virus, a silent mutation (viral RNA: A6225
U) was introduced into the GP gene by QuikChange mutagenesis (Stratagene), generating an additional SspI restriction site at nucleotide (nt) 6220. Furthermore, the first nucleotide of the MARV-specific sequence was mutated (A
G) to enhance the T7 RNA polymerase promoter activity (21). Prior to cloning of the full-length clone, the effect of the A-to-G substitution on replication and transcription activity was tested by using positive-sense minigenomes containing the mutation. It was observed that this mutation did not affect replication and transcription efficiency (data not shown). The full-length clone pMARV(+) is flanked by a T7 RNA polymerase promoter upstream of the leader and a hepatitis delta virus ribozyme downstream of the trailer (29). Transcription of the plasmid by the T7 RNA polymerase resulted in a full-length antigenomic RNA.
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FIG. 1. Cloning strategy for the full-length clone. (Left) Schematic drawing of the cassettes used for cloning. The numbers indicate nucleotide positions in the MARV genome (strain Musoke; GenBank accession number DQ217792). The MARV-specific sequence was obtained either by RT-PCR with viral RNA as the template or PCR assay of already existing plasmids derived from viral RNA. The SspI site shown in pMARV ApaI/SacI serves as a genetic marker. Restriction sites flanking the cassettes were used for construction of full-length pMARV(+) (right).
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FIG. 2. Characterization of recMARV. Virus was recovered from transfected BSR T7/5 cells mixed with Vero cells as described in the text. Vero cells in 25-cm2 flasks were inoculated with the lysate of the mixed culture and checked for CPE daily. As a control, the plasmid encoding the L gene was omitted from the tranfection (pT/L). (A) Light microscopic picture of CPE caused by wt MARV and recMARV on day 6 p.i. (B) Determination of viral titers. Vero cells in 96-well plates were infected with serial dilutions of the virus to determine the viral titer. After 12 days, the CPE was evaluated and the TCID50 calculated. (C) Confirmation of the genetic marker. Virus from the supernatant of infected Vero cells was purified through a sucrose cushion at day 6 p.i. Viral RNA was isolated, reverse transcription was performed (except RT, lane 5), and first-strand cDNA was subjected to PCR. The 632-bp product (lanes 1 and 3) was purified and digested with SspI where stated. Two bands at 301 and 331 bp, respectively, indicated the presence of the genetic tag in recMARV GP gene (lane 4). ctrl, control. (D) Immunofluorescence analysis of Vero cells infected with recMARV or wt MARV. Vero cells were grown on glass coverslips and infected with wt MARV or recMARV at a multiplicity of infection of 1. At 48 h p.i., virus was inactivated in 4% paraformaldehyde overnight. Immunofluorescence analysis was performed using a monoclonal mouse anti-MARV NP antibody and rhodamine-conjugated goat anti-mouse immunoglobulin G; nuclei were stained with DAPI. Arrows indicate viral inclusion bodies. (E) Electron microscopic pictures of purified virions. Virus was collected from the supernatant of infected Vero cells at 6 days p.i. and purified through a sucrose cushion. Virus was inactivated overnight in 4% paraformaldehyde and prepared for electron microscopy as previously described (26). Pictures were taken on a Zeiss 109 electron microscope at a magnification of x50,000.
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FIG. 4. Influence of VP30 on recovery of recombinant MARV and EBOV. (A) BSR T7/5 cells were transfected with plasmids coding for MARV nucleocapsid proteins NP, L, and VP35, the full-length clone pMARV(+), and pC-T7Pol. A plasmid encoding either MARV VP30 (lane 1), the MARV VP30 Zn-finger mutant (VP30Zn-finger ko, lanes 5 to 7), or EBOV VP30 (lanes 8 to 10) was added to the reaction mixture or VP30 was omitted from the transfection (w/o VP30, lanes 2 to 4). Except for the positive control (MARV VP30), transfection was performed in triplicate. At 6 days posttransfection, BSR T7/5 cells were mixed with Vero cells and lysed after an appropriate incubation period. Fresh Vero cells were infected with the supernatants and incubated until day 10 p.i. Cells were lysed, and total RNA was isolated and subjected to a one-step RT-PCR using primers targeting the MARV GP gene (nt 5890 to 6521). Ten percent of the reaction mixture was run on a 2% agarose gel and visualized with ethidium bromide. As controls, cells were infected with MARV (MARV wt inf., lane 12) or not infected (mock, lane 11). (B) BSR T7/5 cells were transfected with plasmids encoding EBOV NP, L, VP35, the full-length clone pFL-EBOVe+, and either VP30EBO or the Zn-finger mutant VP30E H90L (EBOV VP30Zn-finger ko). At 6 days posttransfection, supernatants were used to infect Vero E6 cells. CPE caused by virus infection was determined after an incubation period of 6 days.
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C, A9155
U, mRNA sense) introduced by QuikChange mutagenesis on pT/VP30M (17), which resulted in the disruption of the putative Zn-finger motif (Cys92
Ser, His96
Leu) (Fig. 3A). It has been shown previously for EBOV VP30 that mutation of the homologous amino acids led to a loss of function as transcription activator, while binding to NP-derived inclusion bodies was not impaired (15). Expression of VP30M and VP30M Zn-finger knockout was verified by Western blot analysis. Therefore, BSR T7/5 cells were transfected with 1.0 and 2.0 µg, respectively, of either pT/VP30M or pT/VP30M Zn-finger knockout and lysed at 2 days posttransfection. VP30M was detected using a monoclonal mouse anti-VP30M antibody (1:1,000) and a peroxidase-labeled goat anti-mouse antibody (1:40,000). As shown in Fig. 3C, both constructs were expressed at comparable levels. Immunofluorescence analysis was employed to study the interaction of VP30M Zn-finger knockout with NP. BSR T7/5 cells were grown on coverslips and transfected with either 0.5 µg pT/NPM, 1.5 µg pT/VP30M, 1.5 µg pT/VP30M Zn-finger knockout, or a combination of NP and VP30 plasmids. After 2 days, cells were fixed and permeabilized. NP was detected as described above, and VP30 was detected using a guinea pig anti-VP30 antibody (1:100) and fluorescein isothiocyanate-conjugated goat anti-guinea pig antibodies (1:200; Dianova). Upon single expression, NP formed inclusion bodies (Fig. 3B, panel 1), whereas VP30M and VP30M Zn-finger knockout were homogenously distributed in the cytoplasm (Fig. 3B, panels 2 and 3). When NP and VP30M or the mutant VP30M Zn-finger knockout were coexpressed, both VP30 variants were redistributed into the NP-derived inclusion bodies (Fig. 3B, panels 4 and 5). These data indicate that an intact Zn-finger motif is not important for binding to NP, as also described for EBOV VP30 (15). The next aim was to determine the functionality of VP30M Zn-finger knockout with respect to transcription activation. As mentioned above, MARV VP30 was not required for transcription activation in a MARV-specific minigenome system. However, it has been described previously that MARV VP30 was able to mediate transcription to some extent when used in an EBOV-specific minigenome system. When cells were transfected with plasmids encoding EBOV NP, VP35, L, the EBOV-specific minigenome, and MARV VP30, transcription activation was observed (18). Following the transfection procedure of BSR T7/5 cells described by Weik et al. (27), we replaced pT/VP30EBO with 2.0 µg of either pT/VP30M, pT/ VP30M Zn-finger knockout, or pT/VP30E H90L, an EBOV VP30 mutant with a disrupted Zn-finger motif (15). Transfected cells were lysed on day 2 posttransfection. The used minigenome 3E-5E consists of the 3' and 5' ends of the EBOV genome and a chloramphenicol acetyltransferase (CAT) gene as reporter gene (18). Transcription of the minigenome leads to CAT gene expression and was assayed by CAT activity (17). While MARV VP30 exhibited between 10 and 15% activity (Fig. 3D, lane 3), neither of the Zn-finger knockout mutants was able to activate transcription (Fig. 3D, lanes 4 and 5). Hence, the Zn-binding motif of MARV and EBOV VP30 seems to have a similar function, although the details are not yet understood (15).
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FIG. 3. Localization and functionality of VP30Zn-finger knockout. (A) Putative Zn-binding domain of MARV VP30. Two mutations (underlined) were introduced into pT/VP30M Zn-finger knockout to disrupt the putative Zn-binding motif. The nucleotide numbers indicate positions in the MARV genome. (B) BSR T7/5 cells were grown on glass coverslips and transfected with pT/NPM (NP), pT/VP30M (VP30), and pT/VP30M Zn-finger knockout (VP30Zn-finger ko) as indicated on the left. At 48 h posttransfection, cells were subjected to immunofluorescence analysis using a monoclonal mouse anti-NP ( -NP) and a guinea pig anti-VP30 ( -VP30) antibody. NP was stained with rhodamine-conjugated goat anti-mouse antibodies and VP30 with fluorescein isothiocyanate-conjugated goat anti-guinea pig antibodies. The arrows indicate typical inclusion bodies formed by NP. (C) Western blot analysis of VP30M Zn-finger knockout. BSR T7/5 cells were transfected with 1.0 and 2.0 µg, respectively, of either pT/VP30M or pT/VP30M Zn-finger knockout and analyzed by Western blotting at 2 days posttransfection. VP30M was detected using a monoclonal mouse anti-VP30M ( -VP30M) antibody and a horseradish peroxidase-labeled goat anti-mouse antibody. (D) Transcriptional activity of VP30M Zn-finger knockout using the EBOV-specific minigenome system. BSR T7/5 cells were transfected with plasmids encoding the nucleocapsid proteins of EBOV and the minigenome 3E-5E (27). EBOV VP30 was replaced with 2.0 µg of VP30M or 2.0 µg of Zn-finger knockout (ko) mutants of the MARV-specific VP30M (VP30M Zn-finger knockout) or the EBOV-specific VP30EBO (VP30E H90L) (15). Cells were lysed after 48 h and subjected to a CAT assay. +, pT/L present; , pT/L absent.
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To compare the effect of the VP30 Zn-binding domain on virus recovery between MARV and EBOV, similar experiments were performed by using the EBOV-specific rescue system. BSR T7/5 cells were transfected with plasmids coding for the EBOV nucleocapsid proteins NP, VP35, and L, the EBOV-specific full-length clone pFL-EBOVe+ in positive orientation, EBOV VP30, or the Zn-finger mutant VP30E H90L as described earlier (15, 26). Briefly, BSR T7/5 cells were grown overnight in 25-cm2 flasks to about 60% confluence and transfected with a plasmid mixture containing 4 µg of the full-length plasmid pFL-EBOVe+, 1 µg of pT/VP35EBO, 1 µg of pT/NPEBO, 2 µg of pT/LEBO, and 0.2 µg of either pT/VP30EBO or VP30E H90L by using Fugene 6 reagent (15, 26). After 6 days, culture medium was collected and used for inoculation of Vero E6 cells. At 6 days p.i., successful rescue was demonstrated by the strong CPE caused by infection with the recombinant EBOV. It is shown in Fig. 4B that virus recovery was only observed in the presence of the nonmutated version of VP30. The mutant VP30E H90L, however, was not able to support rescue. These data demonstrate that, in contrast to MARV, an intact VP30 Zn-binding domain is essential for rescue of recombinant EBOV, confirming the assumption that VP30 acts as a transcription activator for EBOV but not for MARV. Thus, MARV VP30 might function rather as a structural component that is probably involved in correct formation of the nucleocapsid. However, it has to be noted that even poor replication and transcription of recMARV by support plasmids could lead to generation of infectious virus. Since the recombinant virus contained the nonmutated version of the VP30 gene, it could amplify without restriction, leading to the observed results. Also, it is conceivable that inefficient translation of the antigenome yielded low levels of wild-type VP30. However, this explanation for the observed results is not very likely because if this were the case, rescue should also occur in the absence of VP30. To ultimately clarify the role of the Zn-binding domain for virus rescue, the next step will be to assess the effect of VP30 mutations in the VP30 gene of the full-length genome.
Taken together, we established a T7 RNA polymerase-driven full-length rescue system for the filovirus prototype MARV. This system provides the opportunity to study the role of viral proteins and cis-acting elements in replication and transcription of mutant virus and will help us to gain insight in the viral life cycle.
Nucleotide sequence accession number. The complete genomic sequence of MARV strain Musoke was submitted to GenBank under accession number DQ217792.
This work was supported by the Deutsche Forschungsgemeinschaft (SFB 535 and 593), by INSERM, by the Ministère de la Recherche (04G537), by the Fonds der Chemischen Industrie (to S. Enterlein), and by the Boehringer Ingelheim Fonds (to M.W.).
All experiments involving recombinant MARV and EBOV were carried out in the INSERM biosafety level 4 laboratory Jean Merieux in Lyon, France. We thank biosafety level 4 laboratory director Alain Jean Georges, the biosafety team members, and Marie-Claude Georges-Courbot for support and assistance in conducting experiments.
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