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Journal of Virology, October 2006, p. 9822-9830, Vol. 80, No. 19
0022-538X/06/$08.00+0 doi:10.1128/JVI.00987-06
Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892-0445
Received 12 May 2006/ Accepted 14 July 2006
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Of the eight proteins present in the entry-fusion complex, three (A16, G9, and J5) are related in structure, suggesting a common but distant evolutionary origin (30). Nevertheless, the presence of genes encoding each of these proteins in all sequenced poxviruses suggests that they have developed nonredundant functions. Previously, we showed that expression of A16 is required for entry and fusion. Here, we provide the first characterization of the G9 protein and show that it also is required for VACV entry and cell-cell fusion.
(This study was carried out at NIH to partially fulfill the Ph.D. thesis requirements of S. Ojeda at the University of Chile, Santiago, Chile.)
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Antibodies. Mouse monoclonal antibody (MAb) to L1 (42) was prepared from a hybridoma kindly provided by A. Schmaljohn. Rat monoclonal antibody to hemagglutinin (HA; clone 3F10) conjugated to horseradish peroxidase was from Roche Applied Sciences. Rabbit polyclonal antibodies to the following VACV proteins were used: anti-A4 (12), anti-A14 (3), anti-P4b/4b (R. Doms and B Moss, unpublished), anti-A21 and -L5 (36, 37), anti-A16 (28), and anti-H3 (10). Gretchen Nelson provided rabbit antiserum to A28. Rabbit antibody SC-7907 to proliferating cell nuclear antigen was from Santa Cruz Biotechnology.
Construction of recombinant viruses. An inducible epitope-tagged G9 virus, vG9Li-HA, henceforth abbreviated vG9i, was derived from vT7lacOI, which contains an inducible copy of the bacteriophage T7 RNA polymerase gene and an Escherichia coli lac repressor gene inserted into the nonessential thymidine kinase gene locus (1). Standard overlap PCR was used to construct a DNA segment containing (i) the coding sequence of the G9R gene with an N-terminal HA tag under the control of the bacteriophage T7 promoter and an E. coli lac operator, (ii) the open reading frame (ORF) encoding enhanced green fluorescent protein (GFP) regulated by the VACV P11 late promoter, and (iii) sequences flanking G9R for homologous recombination with the VACV genome. The inducible G9R ORF was inserted in its natural site but in the opposite "L" orientation to avoid RNA polymerase read-through from neighboring genes. The PCR product was transfected into cells infected with vT7lacOI, and recombinant virus forming green fluorescent plaques was clonally purified. Relevant segments of the viral genome were amplified by PCR and sequenced to verify the construction.
An attempt was made to delete the G9R ORF by using the VACV bacterial artificial chromosome (BAC) system (13, 14). The first step was to replace the G9R ORF in the VAC-BAC plasmid with the ampicillin resistance gene by recombination in E. coli. Ampicillin-resistant colonies were isolated and sequenced to verify the deletion of the G9R ORF. To rescue the mutated VAC-BAC virus, 1 µg of purified VAC-BAC
G9 DNA alone or with 300 ng of intact G9R DNA and flanking sequence was transfected into CV-1 cells that had been infected with 1 PFU per cell of helper fowlpox virus (FPV). After 7 days, cells were harvested and titers for VACV were determined by plaque assay with BS-C-1 cells, which are nonpermissive for FPV. Fluorescence microscopy was used to increase sensitivity for detection of plaques since the VAC-BAC encodes enhanced GFP.
Detergent extraction of purified virus. Purified virions were extracted with 50 mM Tris (pH 7.4) containing 1% Nonidet P-40 detergent and 150 mM NaCl in the presence or absence of 50 mM dithiothreitol (DTT). The mixture was incubated for 1 h at 37°C, and insoluble and soluble materials were separated by centrifugation at 12,000 x g for 30 min.
Western blot analysis. For Western blot analysis, virions or whole-cell lysates were solubilized in NuPage reduced loading sample buffer (Invitrogen) and heat denatured. Polypeptides were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) in 4 to 12% bis-Tris gels (Invitrogen) and transferred to a polyvinylidene fluoride membrane. Membranes were blocked in Tris-buffered saline with 5% nonfat dry milk and 0.05% Tween 20 and incubated with antibodies. Protein bands were visualized by chemiluminescence using West-Pico or Femto kits (Pierce).
Surface biotinylation of purified virions. Purified virions were allowed to react with 10 mM sulfosuccinimidyl-2-(biotinamido)ethyl-1,3-dithiopropionate (sulfo-NHS-SS-biotin; Pierce) in phosphate-buffered saline (PBS) for 1 h at 4°C. The reaction was quenched with 100 mM glycine, and the virions were pelleted at 20,000 x g for 30 min. The virions were incubated in SDS-PAGE loading buffer for 5 min at 85°C and then loaded onto a NeutrAvidin gel column (Pierce). The column was washed, and the biotinylated proteins were released by incubating the gel with SDS-PAGE sample buffer with added DTT for 1 h at room temperature.
Confocal microscopy. Infected HeLa cells were fixed in 4% paraformaldehyde in PBS, washed, and then permeabilized with 0.1% Triton X-100 for 10 min at room temperature. The cells were incubated with the primary antibody or Alexa Fluor 594 phalloidin diluted in 10% complement-inactivated fetal bovine serum and PBS for 1 h at 37°C. The cells were washed and incubated with the fluorophore-conjugated secondary antibody for 1 h at 37°C. DNA was stained with diamidino-2-phenylindole dihydrochloride (DAPI; Invitrogen). Images were collected using a Leica TCS-NT SP2 inverted confocal microscope.
Electron microscopy. BS-C-1 cells were infected with virus at a multiplicity of 10 PFU per cell for 21 h, fixed with 2% glutaraldehyde, embedded in Epon resin, and viewed with an FEI-CM100 transmission electron microscope.
Northern blot analysis.
BS-C-1 cells were infected with 5 PFU per cell of VACV and harvested after 3 h. RNA was extracted with an RNeasy Mini kit (QIAGEN), and 3 µg of denatured RNA was separated by electrophoresis on a 1.2% glyoxal agarose gel (Ambion). The RNA was transferred to a nylon membrane (Amersham), and the blots were hybridized with an [
-32P]dCTP probe that had been labeled using a DECA prime kit (Ambion), washed, and subjected to autoradiography.
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FIG. 1. Multiple-sequence alignment of G9 orthologs. One representative sequence from each genus of Chordopoxvirinae and two from Entomopoxvirinae are included in the alignment. LSDV, lumpy skin disease virus (Capripoxvirus); YLDV, Yaba-like disease virus (Yatapoxvirus); SPV, swinepox virus (Suipoxvirus); MYX, myxoma virus (Leporipoxvirus); VAC, vaccinia virus (Orthopoxvirus); MCV, molluscum contagiosum (Molluscipoxvirus); FPV, fowlpox virus (Avipoxvirus); MSV, Melanoplus sanguinipes (Entomopoxvirus); AMV, Amsacta moorei (Entomopoxvirus). Invariant conserved cysteines are shown in white with a black background; other conserved amino acid residues are shown with a gray background.
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FIG. 2. Correlation of G9 expression with virus replication. (A) Construction and characterization of a G9-inducible virus. The diagram shows relevant segments of the recombinant vG9i genome. T7 pol, bacteriophage T7 RNA polymerase; PT7, bacteriophage T7 promoter; lacO, E.coli lac operator; lacI, E.coli lac repressor; P11, vaccinia late promoter; Pe/l, P 7.5 early/late promoter; TK, thymidine kinase locus. (B) Plaque formation in the presence and absence of inducer. BS-C-1 monolayers were infected with the vG9i in the presence of 0 or 50 µM IPTG. At 48 h postinfection (h.p.i), the cells were stained with crystal violet. (C) Single-step virus yield in the presence and absence of inducer. vG9i or the parent virus vT7LacoOI was adsorbed to BS-C-1 cells (5 PFU/cell) in the presence or absence of IPTG for 60 min at 37°C. After 1 h, the residual inoculum was removed and the cells were washed and overlaid with medium with or without IPTG. Cells were then harvested at zero time or at the indicated times postinfection (p.i.). The crude lysates were treated with 125 µg/ml of trypsin for 30 min at 37°C to disperse virus particles. Virus yields were determined by plaque assay with 50 µM IPTG. Averages of data for two experiments with error bars are shown. (D) Western blot. BS-C-1 cells were infected with 5 PFU of vG9i in the presence of the indicated amounts of IPTG. After 24 h, whole-cell extracts were analyzed by Western blotting with an anti-HA MAb to detect G9 and anti-proliferating cell nuclear antigen (PCNA) rabbit antibody as a loading control. (E) Attempt to delete the G9R ORF. CV-1 cells were infected with FPV and transfected with the VAC-BAC G9 plasmid. After 7 days, the cells were lysed and the presence or absence of infectious virus was determined by plaque assay. In parallel, another plate of CV-1 cells was infected with FPV and transfected with the VAC-BAC G9 plasmid plus or minus DNA containing the G9 wild-type sequence and flanking region and assayed in the same manner.
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G9, in which the G9R ORF was replaced by the ampicillin resistance gene, was carried out with E. coli. CV-1 cells were then infected with helper FPV and transfected with VAC-BAC
G9. After 7 days, the cells were harvested and a plaque assay with BS-C-1 cells was performed to detect any VAC-BAC
G9 virus. However, no plaques were seen at the lowest dilution tested, even when viewed with a fluorescent microscope to detect individual cells expressing GFP, which was encoded in the VAC-BAC. To confirm that VAC-BAC
G9 had no additional mutations that would impair rescue, DNA containing the intact G9R gene and flanking region was transfected with VAC-BAC
G9 into cells infected with FPV. Under these conditions, recombination occurred between the VAC-BAC
G9 and the G9 DNA, resulting in the rescue of infectious virus (Fig. 2E). Our inability to isolate a deletion mutant indicated that G9 was essential or that the level of replication was too low for isolation by this method. Association of G9 with the MV surface membrane. The previous isolation of G9 from infected cell membranes in complex with other entry-fusion proteins (32) suggests that G9 is also MV associated. However, we wanted to confirm the MV association of G9 more directly. Because highly specific antibody to G9 was unavailable, we took advantage of the HA epitope-tagged G9 in vG9i. Virions were purified from cells that were infected in the presence of IPTG and analyzed by Western blotting with an anti-HA MAb. We also analyzed whole-cell extracts in parallel. Relative to the amount of total protein applied to the polyacrylamide gel, G9 was enriched more than eightfold in MVs compared to that in the whole-cell extract (Fig. 3A). By comparison, A16 was enriched more than 16-fold (Fig. 3A). The relatively low percentage of G9 incorporated into MVs compared to that for A16 may be due to the higher than normal and slightly delayed expression that occurs with the inducible T7 promoter system.
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FIG. 3. Association of G9 protein with purified virions. (A) Whole-cell extracts (WCE) or sucrose gradient-purified virions from cells infected with vG9i in the presence of IPTG were analyzed by SDS-PAGE and Western blotting using anti-HA MAb. The amounts of total protein (4 to 16 µg) applied to the gel are indicated. (B) Extraction of G9 from purified virions. Virions prepared as in panel A were treated with 1% NP-40 with or without 50 mM DTT for 1 h at 37°C and separated into soluble (S) or insoluble (P) fractions. Proteins in both fractions were resolved by SDS-PAGE, followed by Western blotting with anti-A3 (P4b/4b) and anti-A14 polyclonal antibodies and anti-HA MAb for G9. (C) Biotinylation of surface proteins. Purified virions prepared as in panel A were treated or mock treated with sulfo-NHS-SS-biotin. Excess biotin was quenched, and the virions were recovered by sedimentation, disrupted with SDS and DTT, and allowed to bind to a NeutrAvidin column, which was then washed. The unbound flowthrough (F) and the bound and eluted (E) materials were resolved by SDS-PAGE and analyzed by Western blotting with anti-HA MAb and anti-A4 and anti-A28 polyclonal antibodies.
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We used a second method to investigate the membrane association of G9 that did not depend on its solubility in a nonionic detergent. MVs were purified from cells infected with vG9i in the presence of IPTG and biotinylated with sulfo-NHS-SS-biotin, a membrane-nonpermeating reagent. Subsequently, the excess biotin was quenched and the virions were collected by centrifugation and lysed by heating in SDS. Biotinylated and nonbiotinylated proteins were separated using NeutrAvidin beads, and the bound and unbound fractions were analyzed by Western blotting. In mock-treated MVs, G9 was associated with the unbound NeutrAvidin fraction, whereas in biotinylated MVs, G9 was almost entirely in the bound fraction (Fig. 3C). As controls, Western blotting was also carried out with antibody to A28, another component of the entry-fusion complex expected to be biotinylated, and with A4, a core protein that should not be biotinylated. The proportion of biotinylated A28 was similar to that of G9, whereas little A4 bound to the NeutrAvidin beads, indicating that the MVs were largely intact (Fig. 3C). We concluded that G9 is exposed on the surface of the MV membrane but that it is insoluble in nonionic detergent.
VACV morphogenesis was unaffected by repression of G9. The processing of core protein precursors into their mature products is coordinated with MV morphogenesis, and interference with the latter prevents cleavage (27). We determined by Western blotting that the ratios of 4b to its protein precursor P4b were similar in the presence and absence of IPTG (Fig. 4A), consistent with normal morphogenesis.
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FIG. 4. Core protein processing and viral morphogenesis. (A) Cleavage of P4b. BS-C-1 cells were infected with 5 PFU per cell of vG9i in the absence or presence of 50 µM IPTG (I). After 12 and 24 h, whole-cell extracts were prepared and analyzed by SDS-PAGE and Western blotting with antibody to P4b/4b. (B, C, and D) Electron microscopy. BS-C-1 cells were infected with 10 PFU per cell of vG9i for 21 h in the absence of IPTG. Ultrathin sections were prepared and examined by transmission electron microscopy Abbreviations: C, crescent; IV, immature virion; N, immature virions with nucleoid. Magnification is indicated by bars.
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Characterization of vG9i MVs made in the absence of IPTG. As previously noted, vG9i was always propagated in the presence of IPTG so that the virus used for all infections thus far contained G9; consequently, only the effects of repressing de novo G9 synthesis were studied. It was important, however, to compare the properties of vG9i virus made in the absence of IPTG (called G9 virus, although, as will be seen, it is not totally lacking G9) with that made in the presence of IPTG (called +G9 virus). In each case, MVs were purified by sedimentation twice through a sucrose cushion and banded once on a sucrose gradient. Specific infectivity, defined as the ratio of PFU to virus particles estimated from the optical density at 260 nm (OD260), was more than 20-fold higher for +G9 virions than for G9 virions. This residual infectivity was explained by the presence of a small amount of G9 in the virions. Although G9 could barely be detected when equal amounts of G9 and +G9 virions were used for Western blotting, the protein was readily detected when six times more G9 than +G9 virus was analyzed (Fig. 5A). Despite the deficiency of G9, the two virus preparations could not be distinguished from each other or from wild-type VACV WR by silver staining polypeptides following SDS-PAGE (Fig. 5B). Furthermore, Western blotting with available antibodies to other entry-fusion proteins demonstrated the presence of similar relative amounts of A28, A21, L5, and A16 as well as an additional membrane protein, H3, in all three MV preparations (Fig. 5C). Note that at this loading, the small amount of G9 was not detected in G9 virions; G9 was not detected in wild-type VACV WR because of the absence of the HA epitope tag (Fig. 5C).
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FIG. 5. Polypeptide composition of purified virions. (A) SDS-PAGE and Western blotting with anti-HA MAb of G9 from purified virions made in the presence (+G9) or absence (G9) of IPTG. Lanes 1, 2, and 3 were loaded with equal amounts of WR, +G9, and G9 virions, respectively, and lane 4 with six times more +G9 virions. (B) Equal numbers of purified G9, +G9, and VACV WR virus particles were analyzed by SDS-PAGE and silver staining. The mobilities of standard proteins of the indicated masses are shown on the left. (C) SDS-PAGE and Western blotting with polyclonal antibodies to A28, A21, L5, A16, and H3 from purified G9 and +G9 virions. G9 was probed with anti-HA MAb as in panel A.
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FIG. 6. Analysis of early transcription in cells infected with purified G9 and +G9 virions. BS-C-1 cells were mock infected or infected with 5 PFU per cell of +G9 virions or the equivalent OD260 of G9 virions in the presence of AraC. Total RNA was extracted at 3 h after infection. Northern blot analysis was carried out using [ -32P]dCTP-labeled DNA probes complementary to the VACV A20R and GADPH cellular transcripts. Radioactivity was detected with a phosphorimager.
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FIG. 7. Virus binding, entry, and induced cell-cell fusion. (A) Detection of extracellular virions and intracellular cores. HeLa cells were infected with 5 PFU per cell of +G9 virions or the equivalent OD260 of G9 virions in the presence of 300 µg of cycloheximide per ml for 1 h at 4°C and then for 2 h at 37°C. At this time, the cells were washed, fixed, and permeabilized with 0.1% Triton X-100 and then incubated with anti-L1 mouse MAb and anti-A4 rabbit polyclonal antibody followed by fluorescein isothiocyanate-conjugated goat anti-mouse (green) and rhodamine red-X-conjugated goat anti-rabbit (red) antibodies, respectively. DNA was visualized by DAPI staining, and optical sections were obtained by confocal microscopy. (B) Fusion from within. BS-C-1 cells were infected with 2 PFU per cell of vG9i in the absence (-I) or presence (+I) of 50 µM IPTG for 18 h at 37°C followed by a brief exposure to pH 5.0 or 7.4 buffer. The buffer was replaced with regular medium, and the incubation continued for 3 h. The cells were stained with Hoechst dye and visualized by phase and epifluorescence microscopy for DNA and GFP expression. (C) Fusion from without. BS-C-1 monolayers were incubated with 200 PFU per cell of +G9 virions or the equivalent OD260 of G9 virions at 4°C for 1 h. Unabsorbed and loosely bound virions were removed by washing, and the cells were briefly treated with pH 5.0 or 7.4 buffer at 37°C and then incubated in regular medium containing 300 µg of cycloheximide per ml for 3 h. The cells were fixed and stained with DAPI and Alexa Fluor 594-phalloidin to visualize DNA and the actin cytoskeleton, respectively.
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Formation of syncytia can also be triggered by briefly lowering the pH immediately after adding a high multiplicity of MVs to cells (18). This phenomenon, called fusion from without, also requires the previously studied entry-fusion proteins. To determine whether G9 is required for fusion from without, 200 PFU of +G9 virions or the equivalent number of G9 virions were added per cell. The cells were then briefly treated with pH 5.0 or 7.0 buffer and incubated in regular medium for 3 h in the presence of cycloheximide to prevent cytopathic effects. Extensive cell-cell fusion was observed only in monolayers infected with +G9 virions and exposed to low pH (Fig. 7C). Thus, G9 is required for VACV-induced fusion from within and without.
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VACV MV membrane proteins can be divided into two functional groups, those required for assembly and structure and those that participate in virus entry and membrane fusion. Here, we have shown that G9 belongs to the latter class, which includes at least five other membrane proteins, namely, A16, A21, A28, H2, and L5 (28, 31, 33, 36, 37). In each case, conditional null mutants produce normal-looking MVs and EVs that can bind to cells but are unable to penetrate or induce membrane fusion. These six proteins, as well as two others (G3 and J5) that are still uncharacterized, are conserved in all sequenced poxviruses and associate in an entry-fusion complex (32). There appear to be at least two mechanisms for activation of VACV fusion: binding of MVs to an unknown receptor or receptors on the plasma membrane, allowing neutral pH fusion (2, 5, 6), or via an internalization mechanism (11, 29) that is mimicked by low-pH-induced syncytium formation (15, 18). There is no evidence that the EV membrane is directly involved in membrane fusion, though it may affect attachment and internalization (21, 22, 24, 38).
There is variation among the effects of repressing the expression of VACV genes with the inducible system, which may depend on position effects of the target gene within the genome and the amount of the protein needed to fulfill its role in replication. In the case of G9, some infectious virus was made in the absence of inducer, even though we reversed the orientation of the ORF in order to prevent read-through from neighboring genes. The infectivity correlated with small but detectable amounts of G9 in purified virions. Nevertheless, this result could also be interpreted as indicating that G9 is important but not absolutely essential. To evaluate the latter possibility, we tried to delete G9 by using a novel approach that has worked well in other cases (A. Domi, unpublished). The method depends on the ability of FPV to rescue the VACV genome cloned in a bacterial artificial chromosome (13). In the present case, we deleted the G9R ORF from the cloned genome but were unable to demonstrate the rescue of infectious VACV unless DNA containing G9R was also transfected, even though this required an additional recombination step. Thus, either G9 expression is essential or deletion of the gene severely impairs infectivity, preventing us from isolating mutants. A similar ambiguity exists with respect to the A16L gene (28). Regardless, the phenotypes of the inducible G9 and A16 mutants were similar to those of the other entry-fusion proteins.
In conclusion, an unprecedented number of proteins are required for poxvirus entry and membrane fusion. Why poxviruses require so many proteins to accomplish what other viruses do perfectly well with one or two is an intriguing question.
The research was supported by the Intramural Research Program of the NIAID of the NIH.
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