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Journal of Virology, August 2006, p. 8089-8099, Vol. 80, No. 16
0022-538X/06/$08.00+0 doi:10.1128/JVI.00579-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Ping Li,
Angela McLees, and
Richard M. Elliott*
Centre for Biomolecular Sciences, School of Biology, University of St Andrews, North Haugh, St Andrews KY16 9ST, Scotland, United Kingdom
Received 22 March 2006/ Accepted 23 May 2006
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Bunyaviruses share certain morphological and biochemical characteristics, including possession of a tripartite single-stranded RNA genome, but differ in the patterns of genome RNA and viral protein sizes, genome segment coding strategies, and the coding of nonstructural proteins (34). For BUNV, all three genome RNA segments are of negative-sense polarity. The large segment (L) codes for an RNA-dependent RNA polymerase (L protein), the medium segment (M) codes for a precursor polyprotein (NH2-Gn-NSm-Gc-COOH), which is cotranslationally cleaved to yield the two virion glycoproteins (Gn and Gc) and a nonstructural protein called NSm, and the smallest segment (S) codes for the nucleoprotein N and a second nonstructural protein NSs in overlapping reading frames (1, 36, 47). Viruses replicate in the cytoplasm of infected cells and mature by budding primarily at membranes of the Golgi apparatus (24, 25, 33, 47).
Proteins called NSm are also encoded by the M RNA segments of some phleboviruses and the tospoviruses (47) but do not show amino acid similarity to orthobunyavirus NSm proteins. Like orthobunyaviruses, phleboviruses encode their NSm proteins as part of a precursor with the glycoproteins (9, 18, 56), whereas NSm of tospoviruses is translated from a subgenomic mRNA in an ambisense manner (21, 27). Little is known about the function of NSm encoded by orthobunyaviruses or phleboviruses. The BUNV NSm protein was found to localize to the Golgi in virus-infected cells and, when expressed alone, from a transfected cDNA clone (26, 35). NSm did not affect the cotranslational cleavage of the BUNV glycoprotein precursor but seemed to be required for the efficient maturation of the two glycoproteins (50). The fact that the Golgi complex houses the bunyavirus factory where virus particles mature and bud (25, 37, 45) suggests that NSm may be involved in the process of virus assembly and morphogenesis, though this suggestion is tempered by the recent observation that a Maguari orthobunyavirus mutant lacking the C-terminal two-thirds of NSm is viable (41). The NSm protein of tospoviruses forms tubular structures in plant and insect cells (52) and is the viral "movement protein," mediating cell-to-cell movement of the nonenveloped ribonucleocapsid structures across the plasmodesmata in infected plant cells (22, 51).
To investigate the role of BUNV NSm in viral replication, we first determined the intracellular location, membrane integrality, and topology of the protein. We also developed a novel virus assembly assay based on the BUNV minigenome (59) to evaluate the function of NSm in assembly and morphogenesis of infectious virus-like particles (VLPs). Using our efficient reverse genetics system, we rescued three recombinant BUNVs that contain deletions in the NSm coding region and a virus in which the green fluorescent protein (GFP) coding sequence was inserted into NSm. Our data show that the N-terminal region of NSm is essential for morphogenesis in infected mammalian cells.
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Virus growth curves. BHK-21 cells in 35-mm-diameter petri dishes were infected with 0.01 PFU per cell of the different viruses for 1 h, and the cells were washed twice with PBS to remove unattached viruses. Supernatants were harvested at various times after infection, and virus titers were determined by plaque assays on Vero E6 cells.
Antibodies. A monoclonal antibody (MAb 742) against the BUNV Gc protein, anti-BUN, a rabbit antiserum against purified BUNV virions, and anti-NSm, a rabbit antiserum against a peptide TDQKYTLDEIADVLQA (residues 338 to 353 of the M segment precursor) derived from NSm, have been described previously (26, 35, 57). A rabbit polyclonal antibody against GM130, a cis-Golgi matrix protein (34), was provided by M. Lowe (School of Biological Sciences, University of Manchester, United Kingdom), and a monoclonal antibody against the same Golgi protein was purchased from BD Bioscience. Goat anti-rabbit antibody conjugated with fluorescein isothiocyanate was purchased from Sigma, and goat anti-mouse antibody conjugated with Cy5 was purchased from Amersham Pharmacia Biotech (Buckingham, United Kingdom).
Plasmids. Plasmids pT7riboBUNL(+), pT7riboBUNM(+), and pT7riboBUNS(+) that contain full-length cDNAs of the BUNV genome segments under control of a T7 promoter and hepatitis delta virus ribozyme have been described previously (2). Eight BUNV M segment cDNA mutants, which contain internal deletions in the NSm coding region, were constructed from pT7riboBUNM(+) using a PCR mutagenesis approach (49) with Turbo Pfu DNA polymerase (Stratagene) (Fig. 1A). The mutated M cDNAs were also cloned into pTM1 (32) for use in the BUNV minigenome assembly assay. pT7riboBUNM-NSm-EGFP was made by inserting the enhanced GFP (EGFP) gene into the NSm coding region at PCR-created SacI restriction enzyme sites, replacing amino acid residues 403 to 420 (Fig. 1B). For the yeast two-hybrid protein-protein interaction assay, the predicted cytoplasmic domain (residues 391 to 457) of NSm, the cytoplasmic tail (residues 223 to 302) of Gn, or the complete NSs coding sequence was cloned into the binding domain (BD)-containing plasmid pGBKT7 or the activation domain (AD)-containing plasmid pGADT7 (28) (both from Clontech, Palo Alto, CA) to produce pBD-NSm, pAD-NSm, pBD-Gn, and pBD-NSs. All constructs were confirmed by DNA sequence analysis. The primers used and details of PCR are available upon request.
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FIG. 1. The BUNV M RNA segment and the encoded precursor polyprotein. (A) The gene layout of the M segment is shown at the top, with positions of amino acid residues marking protein boundaries indicated. ss, signal peptide; TMD, transmembrane domain. Below, the Kyte-Doolittle hydropathy plot and predicted domain structure of NSm are shown. Domains I to V were suggested by the program TMHMM (21). The amino acid alignment of the NSm proteins of BUNV, Maguari virus, and its mutant R2 are shown, with the conserved N-terminal region boxed. The peptide sequence used to raise the anti-NSm antibody is underlined. (B) Schematic of NSm deletion mutants. The regions deleted are indicated by the dashed line, and the residues deleted are indicated at the right. (C) Insertion of EGFP open reading frame into NSm. The EGFP coding sequence was cloned into the M segment cDNA at artificial SacI restriction enzyme sites created at codons 403 and 420 in NSm.
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Metabolic radiolabeling of viral proteins. Vero E6 cells in 35-mm-diameter petri dishes were infected with wild-type (wt) or mutant BUNVs at a multiplicity of infection (MOI) of 1.0 PFU per cell and labeled with 50 µCi [35S]methionine (Amersham Pharmacia Biotech) for 1 to 2 h at various time points after infection. Cell lysates were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), as described previously (57).
Subcellular fractionation and sodium carbonate extraction of membranes. Preparation of the total microsomal fraction of wt BUNV-infected Vero E6 cells was performed as described by Ehrenreich et al. (6) with minor modifications. Briefly, cells grown in 35-mm-diameter petri dishes were infected with an MOI of 5.0 PFU per cell and were radiolabeled for 2 h with 100 µCi [35S]methionine at 24 h postinfection. The cells were scraped into phosphate-buffered saline (PBS) and washed twice with cold PBS and once with 0.25 mM sucrose-10 mM HEPES buffer by centrifugation at 2,500 rpm for 3 min at 4°C. The cell pellet was resuspended in 400 µl of 0.25 mM sucrose-10 mM HEPES buffer and disrupted by three freeze-thaw cycles alternatively at 37°C and on dry ice, followed by three 10-s pulses of sonication in a water bath at 4°C. After centrifugation at 10,000 x g for 10 min at 4°C, the supernatant (total fraction) was further centrifuged at 65,000 rpm for 15 min (Beckman TL-100 rotor) to produce the soluble and pellet (microsomal) fractions. The microsomal fraction was resuspended in 400 µl 0.1 M Na2CO3 solution (pH, 11.0) and incubated for 30 min on ice. The sample was laid on top of 200 µl 0.25 M sucrose-10 mM HEPES buffer and centrifuged at 65,000 rpm at 4°C. The pellet was resuspended in 200 µl of 0.25 M sucrose-10 mM HEPES buffer (membrane fraction). The samples were then subjected to SDS-PAGE analysis and Western blotting.
Indirect immunofluorescence staining. Immunofluorescence assays were performed as previously described (49). Briefly, the infected or transfected cells were fixed with 4% paraformaldehyde and then permeabilized with 0.1% Triton X-100 in PBS before staining with specific primary antibodies and secondary antibody conjugates. Some samples were semipermeabilized by the freeze-thawing method as described by Mardones and Gonzalez (31) with minor modifications. Cells on coverslips were placed on a precooled metal block (70°C) for 10 s. Upon freezing, cells were put on a prewarmed metal block (40°C) for 10 s and were then fixed in PBS-4% paraformaldehyde. The localization of fluorescently labeled proteins was examined using either a Zeiss LSM confocal microscope or Delta Vision restoration microscope as indicated in the figure legends.
BUNV assembly assay. BSR-T7/5 cells were transfected with three expression constructs, pTM1-BUNN (0.1 µg), pTM1-BUNL (0.25 µg), and either pTM1-BUNM (0.2 µg) or one of the NSm mutants cloned in pTM1 (also 0.2 µg), together with 0.3 µg of the BUNV-derived minigenome, pT7riboBUNMRen() (minigenome containing Renilla luciferase reporter gene) (59). pTM1-FFluc (0.1 µg), which contains the firefly luciferase gene (58), was cotransfected as an internal transfection control. Five hours later, the transfection mixture was removed and replaced with 2 ml of growth medium. At 24 h posttransfection, the supernatant was clarified by centrifugation for 3 min at 1,700 rpm, and 1.5 ml was used to infect BSR-T7/5 cells that had been transfected with pTM1-BUNN (0.1 µg) and pTM1-BUNL (0.2 µg) for 5 h. Renilla luciferase activity was measured after 24 h incubation using the dual-luciferase assay kit (Promega) as described previously (20). The level of Renilla luciferase activity of the infected cells was used as a measure of infectious VLP production. The specificity of passage of Renilla luciferase was demonstrated by the absence of firefly luciferase activity in the same cell extract.
Yeast two-hybrid assay. Protein-protein interaction assays were performed using a commercial yeast two-hybrid system, Matchmaker 3 (Clontech, Palo Alto, CA), as described previously (28). Briefly, Saccharomyces cerevisiae strain AH109 (17) cells were cotransformed with GAL4 AD- and BD-containing plasmids expressing the genes of interest using the lithium acetate method (13). Cotransfection with the appropriate other empty vector (pGBKT7 or pGADT7) was used as a negative control. Further controls were provided in the Matchmaker 3 system and included pGADT7-T and pGBKT7-53 (positive control) and pGADT7-T and pGADT7-Lam (negative control). Yeast colonies were selected on SD-L-W-H-A selective medium containing various amounts of 3-amino-1,2,4 triazol (26).
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FIG. 2. Intracellular localization and determination of the membrane integrality of NSm. (A) Colocalization of NSm with Gc (panels a to c) and Golgi matrix protein GM130 (panels d to f). wt BUNV-infected BSR-T7/5 cells were stained with a mixture of anti-NSm antibody and either anti-Gc MAb 742 or anti-GM130 MAb. NSm stains green (panels a and d), and Gc and GM130 stain red. Merged confocal microscopic images are also shown, with colocalization shown in yellow (panels c and f). (B) NSm is an integral membrane protein. Vero E6 cells were infected with wt BUNV and radiolabeled with [35S]methionine, and membrane fractions were prepared as described in Materials and Methods. Total (T) and microsomal (Mi) fractions were collected, and membranes were extracted with sodium carbonate to yield supernatant (S) and membrane (M) samples. The fractions were analyzed by SDS-PAGE. The positions of viral proteins are indicated at the right. (C). Western blot analysis of the gel using anti-calnexin antibodies as a marker for membranes. (D) Western blot analysis of the gel using anti-tubulin antibodies as a marker for the cytosolic fraction.
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Membrane topology of NSm. The topology of NSm in intracellular membranes was examined by assessing the accessibility of an anti-NSm antibody, which was raised against NSm resides 338 to 353 (35), to its cognate epitope in semipermeabilized virus-infected cells. Cells on glass coverslips were frozen at 70°C for 10 s and then thawed at 40°C for 10 s. The freeze-thaw treatment allows the antibody to penetrate the plasma membrane but not the intracellular membranes, which remain impermeable (31). As a control, the semipermeabilized cells were further treated with 0.2% Triton X-100 to permeabilize them fully. As shown in Fig. 3A, both NSm and the cis-Golgi matrix protein GM130 were detected in fully permeabilized cells (panels a to c). However, in semipermeabilized cells, although GM130 was detected, no staining of NSm was evident (Fig. 3A, panels d to f), indicating that domain II, the first stretch of predominantly nonhydrophobic amino acids (residues 328 to 361) of NSm, was not accessible to the anti-NSm antibodies. We also analyzed cells infected with a newly constructed recombinant virus rBUNM-NSm-EGFP (see later for details) that expresses an NSm-EGFP hybrid protein. Anti-NSm antibodies were not able to access the same region of the recombinant NSm-EGFP fusion protein in semipermeabilized cells (Fig. 3B, d to f) but reacted with the protein in fully permeabilized cells (Fig. 3B, a to c). Thus, we conclude that NSm domain II is located inside an intracellular compartment, such as the endoplasmic reticulum (ER) or Golgi complex. A possible topological model of NSm is shown in Fig. 3C which is consistent with that suggested by Pettersson and Melin (40).
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FIG. 3. Determination of the topology of BUNV NSm. Vero E6 cells were infected with wt BUNV (A) or recombinant virus rBUNM-NSm-EGFP (B) and semipermeabilized by the freeze-thaw technique. Cells shown in the upper row of each set were further permeabilized with 0.2% Triton X-100-PBS (panels a to c in each case). Before examination by confocal microscopy, the wt BUNV-infected cells were costained with rabbit anti-NSm serum and anti-GM130 MAb and the rBUNM-NSm-EGFP-infected cells were stained only with anti-NSm serum. In panel A, NSm stains green and GM130 stains red, and in panel B, the EGFP autofluorescence of NSm-EGFP protein shows as green and the NSm antibody stains red. Merged confocal images are also shown. NSm antibodies can only react with NSm or NSm-EGFP in fully permeabilized cells. (C) The predicted topology of NSm. Hydrophobic domains are shown as black columns across the intracellular membrane. The positions of the predicted domains I to V and of the anti-NSm epitope are marked.
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The assay was used to analyze the requirement for NSm on VLP formation. As shown in Fig. 4A, infectious VLPs were produced in cells that were cotransfected with pTM1-BUNM (wt control, column 2), which expresses intact NSm, and with pTM1-BUNM-NSm
4 and pTM1-BUNM-NSm
5 (columns 7 and 8), which contain deletions in domains III and IV. No VLPs were detected in the supernatant from cells cotransfected with pTM1-BUNM-NSm
1, pTM1-BUNM-NSm
2, pTM1-BUNM-NSm
3, pTM1-BUNM-NSm
6, or pTM1-BUNM
NSm, nor from the control cells transfected with empty pTM1 or an inactive L protein mutant or from nontransfected cells. The authenticity of the VLPs was validated by their effective neutralization by anti-BUN antiserum (column 3). In addition, there was no passage of firefly luciferase from the initially transfected cells to the new cells, indicating specific packaging of the BUNV minigenome (data not shown). These results showed that VLP formation with construct pTM1-BUNM-NSm
4 was as efficient as that with the wt M segment cDNA construct, whereas VLP formation in cells transfected with pTM1-BUNM-NSm
5 was compromised (about 35% of luciferase activity was passaged compared to wt).
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FIG. 4. Effect of internal deletions in NSm on virus assembly, protein processing, and intracellular transport. (A) Production of virus-like particles. BSR-T7/5 cells were transfected with minigenome-component plasmids and either wt BUNV M segment cDNA or mutated NSm-containing plasmids as indicated. Controls included pTM1 instead of pTM1-BUNM, substitution of wt BUNV L segment cDNA with an inactive L cDNA mutant, and mock-infected cells. Supernatants from these cells were taken 24 h posttransfection and used to infect fresh BSR-T7/5 cells that had been transfected with BUNV L and N protein-expressing plasmids 5 h previously. In one case, the supernatant was reacted with anti-BUN antibody prior to infection. Renilla luciferase activity in all extracts of these cells was measured after 24 h and is shown in arbitrary light units. 1, pTM1 vector control; 2, pTM1-BUNM (wt control); 3, anti-BUNV serum-neutralized supernatant from pTM1-BUN-M-transfected cells; 4, pTM1-BUNM-NSm 1; 5, pTM1-BUNM-NSm 2; 6, pTM1-BUNM-NSm 3; 7, pTM1-BUNM-NSm 4; 8, pTM1-BUNM-NSm 5; 9, pTM1-BUNM-NSm 6; 10, pTM1-BUNM NSm; 11, substitution with inactive L mutant; 12, mock-transfected cells. (B) Processing of BUNV glycoproteins from Vero E6 cells transfected with wt or NSm deletion mutant cDNA clones. Vero E6 cells were infected with recombinant vaccinia virus vTF7-3, followed by transfection with pTM1-BUNM (wt) or NSm mutant cDNA constructs. Cells were labeled with [35S]methionine for 15 h, extracts were prepared, and viral proteins were immunoprecipitated with anti-BUN serum. The labeled glycoproteins were subjected to endo H (H) or mock digestion (C) and analyzed by SDS-10% PAGE under reducing conditions. The relevant portions of the gels are shown. (C) Intracellular localization of Gc expressed from wt and mutated NSm-containing M segment cDNAs. BSR-T7/5 cells were transfected cDNA constructs as indicated and were stained with a mixture of anti-Gc MAb 742 and anti-GM130 antibodies and 4',6'-diamidino-2-phenylindole (DAPI). Cells were examined using the DeltaVision microscopy system (AppliedPrecision), and triple-stained images are shown. Gc proteins stain red, the Golgi stains green, and cell nuclei, stained with DAPI, are shown in blue.
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1 to pTM1-BUNM-NSm
5 (lanes 3 to 13) were correctly cleaved. The Gc proteins expressed from pTM1-BUNM-NSm
1 and pTM1-BUNM-NSm
2 were predominantly endo H sensitive (lanes 4 and 6), while both endo H-sensitive and -resistant forms of Gc (evident as two closely migrating bands) could be seen in extracts from cells transfected with mutants pTM1-BUNM-NSm
3 (lane 8), pTM1-BUNM-NSm
4 (lane 11), pTM1-BUNM-NSm
5 (lane13), and pTM1-BUNM
NSm (lane 17) as well as with wt BUNV M segment cDNA (lane 2). No glycoproteins of the correct size were detected in extracts of cells transfected with mutant pTM1-BUNM-NSm
6 that lacks domain V (lanes 14 and 15).
The intracellular localization of the expressed glycoproteins was monitored by immunofluorescent staining of transfected cells, using MAb 742 to detect Gc. Golgi targeting was influenced by deletion of the complete NSm coding region (pTM1-BUNM
NSm) (Fig. 4C, panel h) and deletion of domain I (pTM1-BUNM-NSm
1) (panel b) where most Gc staining appears to be cytoplasmic. The pattern of staining was distinct from that observed in cells in which the intact NSm was expressed (panel a). However, Golgi localization of Gc appeared similar to the wt observed in cells transfected with pTM1-BUNM-NSm
2, -NSm
3, -NSm
4, and -NSm
5 (Fig. 4C, panels c to f). Deletion in NSm domain V completely abrogated intracellular transport of the glycoproteins to the Golgi, as Gc showed a cytoplasmic staining pattern (Fig. 4C, panel g). Together with the radiolabeling result (Fig. 4B, lanes 14 and 15), this indicates that the precursor polyprotein from transfected pTM1-BUNM-NSm
6 was not correctly processed.
Generation of recombinant BUNVs containing mutations in NSm.
The role of NSm in viral replication was further evaluated using our improved reverse genetics system (2, 30) to recover NSm-deficient recombinant viruses. pT7riboBUNM(+) derivatives containing deletions in NSm were transfected into BSRT-7/5 cells, together with plasmids pT7riboBUNL(+) and pT7riboBUNS(+) that contain wt L and S segment cDNAs. Consistent with results form the VLP assay, no viable virus was recovered from repeated virus rescue attempts with the constructs that either lacked the complete NSm (in the case of pT7riboBUNM
NSm) or contained internal deletions in domains I, II, and V (in the cases of pT7riboBUNM-NSm
1, -NSm
2, and -NSm
6). We were successful in rescuing three recombinant viruses from the NSm deletion constructs pT7riboBUNM-NSm
3, -NSm
4, and -NSm
5 that contain deletions covering domains II to IV (Fig. 1B) (the rescued recombinant viruses were designated rBUNM-NSm
3, rBUNM-NSm
4, rBUNM-NSm
5). The recovery of rBUNM-NSm
3 was somewhat unexpected, as no VLP production was detected using the construct pTM1-BUNM-NSm
3. No band equivalent to NSm was detected in the protein profiles of cells infected with the mutant viruses with viruses rBUNM-NSm
3, rBUNM-NSm
4, and rBUNM-NSm
5 (Fig. 5, lanes 3, 4, and 5). Two prominent bands below Gc were seen in cells infected with rBUNM-NSm
3. Their identity has not been pursued, but they may represent aberrant processing products of the M segment precursor. DNA sequence analysis of reverse transcription-PCR products of recombinant virus RNA confirmed that the viral genomes carried the expected deletions (data not shown).
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FIG. 5. Protein profiles of cells infected with wild-type and recombinant BUNV. Vero E6 cells were infected with wt BUNV (lane 2), rBUNM-NSm 3 (lane 3), rBUNM-NSm 4 (lane 4), rBUNM-NSm 5 (lane 5), and rBUNM-NSm-EGFP (lane 6) at 5 PFU/cell. At 24 hpi, cells were labeled with 100 µCi [35S]methionine for 2 h, and then equal amounts of cell lysate were analyzed by SDS-12.5% PAGE under reducing conditions. Positions of viral proteins are indicated.
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Effect of internal deletions in NSm on virus viability and growth in cell culture.
We compared the plaque size, growth kinetics, and ability to shutoff host cell protein synthesis of the three recombinant viruses carrying deletions in NSm (Fig. 6). The plaque morphology of the mutant viruses rBUNM-NSm
3 and rBUNM-NSm
4 were comparable to those of wt BUNV, while plaques produced by rBUNM-NSm
5 were much smaller (Fig. 6A). Analysis of the growth curves of the mutant viruses revealed that replication of all mutant viruses was compromised, to different extents, in comparison with that of wt BUNV (Fig. 6B). rBUNM-NSm
3 grew slowest, generating titers nearly 1,000-fold less than that of wt BUNV at 24 h postinfection, and maximal virus yield was almost 100-fold lower. rBUNM-NSm
5 and rBUNM-NSm
4 also grew more slowly than wt BUNV but reached maximal yields only 10-fold lower than wt BUNV. Analysis of the time course of protein synthesis (Fig. 6C), performed under similar multiplicities of infection, showed that shutoff of host cell protein was delayed in cells infected with the mutant viruses. Shutoff was already evident at 6 h postinfection (hpi) in wt BUNV-infected cells and was complete by 18 hpi; in the mutant virus-infected cells, shutoff was delayed by 6 h (rBUNM-NSm
4) to 24 h (rBUNM-NSm
5). Viral N protein synthesis was only significantly delayed in cells infected with rBUNM-NSm
5, though continued for longer than in cells infected with wt BUNV.
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FIG. 6. Plaque phenotype, growth kinetics, and protein synthesis shutoff of wt and mutant BUNV. (A) Comparison of plaque morphology on Vero E6 cells. Cell monolayers were fixed with 4% formaldehyde and stained with Giemsa solution 4 days after infection. (B) Viral growth curves. Vero E6 cells were infected with either wt or recombinant viruses at an MOI of 0.01 PFU/cell. Virus was harvested at 8-h intervals and titrated by plaque assay. The results shown are the averages from two independent titrations. (C) Time course of protein synthesis. Vero E6 cells infected at an MOI of 1.0 PFU/cell were labeled with 100 µCi [35S]methionine for 20 min at the time points indicated, and cell lysates were analyzed by SDS-15% PAGE. The positions of the viral proteins are indicated at the right.
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FIG. 7. Interaction of Bunyamwera virus proteins. (A) Coimmunoprecipitation. BUNV-infected Vero E6 cells (at 5 PFU/cell) were labeled with 80 µCi [35S]methionine for 4 h at 30 h postinfection, and equal volumes of cell lysate were immunoprecipitated with anti ( )-BUN serum (lanes 1 and 2), anti-Gc MAb 742 (lanes 3 and 4), anti-NSm serum (lanes 5 and 6), or anti-N serum (lanes 7 and 8). I, BUNV-infected cells; C, mock-infected control cells. The positions of the viral proteins are indicated. (B) Interaction studied by yeast two-hybrid analysis. S. cerevisiae AH109 cells were cotransformed with plasmids as listed below and plated on selective medium as described in Materials and Methods. Plasmid combinations: a, pBK-NSm + pAD-NSm; b, pBK + pAD-NSm; c, pBK-NSm + pAD; d, pBK-NSs + pAD-NSm; e, pBK-NSs + pAD; f, negative control; g, pBK-T + pAD-p53; h, pBK-T + pAD-Lam; i, pBK-Gn + pAD; j, pBK-Gn + pAD-NSm; k, pBK + pAD-NSm; l, negative control. Growth on the plates indicates interaction of NSm with itself (sector a), with NSs (sector d), and the cytoplasmic tail of Gn (sector j).
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The hydropathy profile and computer-aided domain prediction analysis of NSm (Fig. 1A) revealed that the protein has features common to transmembrane proteins (8). We demonstrated that NSm was indeed an integral membrane protein by its resistance to sodium carbonate extraction (10) and its partitioning with the viral glycoproteins in membranes isolated from infected cells. The orientation of integral membrane proteins is defined by the distribution of charged residues flanking the hydrophobic core of the signal-anchor sequence (15). On this basis, it was predicted that NSm domain II should be located in the ER lumen, with the second hydrophobic domain (domain III) acting as a transmembrane anchor (Fig. 3C). This prediction correlated with the result from experiments to assess the accessibility of an epitope on NSm to its cognate antibody in semipermeabilized cells infected by wt BUNV or a recombinant BUNV expressing an NSm-EGFP fusion protein.
The production of VLPs from recombinant expressed proteins has proved a valuable technique to study virus assembly (39). The assembly of infectious VLPs probably requires all the components for virus replication, including the structural and nonstructural proteins as well as the virus genome or genome analogue. We developed an assay to produce infectious BUNV VLPs that were capable of transferring a minigenome RNA-expressing luciferase (59), by infection, into new cells. It was found that no infectious VLPs were produced when either the full-length NSm or regions in domains I, II, III, or V were removed from the M segment polyprotein precursor. This correlated with the inability to rescue infectious virus by reverse genetics from the cDNA constructs that contained the same deletions in domains I, II, and V. However, we were able to recover a viable virus from pT7riboBUN-NSm
3 that contains the deletion in domain III; this mutant virus exhibited the poorest growth kinetics of the mutant viruses rescued, perhaps indicative of inefficient virus assembly. Presumably, the VLP assay in its present form is not sufficiently sensitive for use with precursor proteins containing such disruptive mutations. Infectious VLPs and recombinant viruses were obtained from constructs containing deletions in domain IV. In addition, we were able to recover a viable virus expressing a hybrid NSm-EGFP protein, indicating that incorporation of a foreign sequence did not interfere with NSm function or, indeed, processing of the M segment precursor protein. This correlates with data from Bupp et al. (5), who demonstrated that insertion of a portion of the beta-galactosidase gene into the La Crosse virus NSm coding region did not affect processing or intracellular targeting of the glycoproteins when expressed via vaccinia virus vectors.
Correct processing of the glycoprotein precursor depends both on the sequence and protease accessibility of the Gn-NSm and NSm-Gc cleavage sites and on the presence of N-terminal signal sequences to translocate the proteins across the ER membrane. The suggested topology of the precursor (40) and of NSm (Fig. 3C) is similar to that of the Semliki Forest virus membrane protein precursor that comprises p62-6K-E1 proteins (46). In this case, the C-terminal hydrophobic domains of p62 and 6K act as an internal signal sequences for 6K and E1, respectively. Deletion of 6K does not destroy virus viability, and the hydrophobic domain in p62 can substitute as the E1 signal sequence (29). Analyses of the mutants described in this paper and of the Maguari virus R2 mutant (41) suggest a similar arrangement for the orthobunyavirus precursor. We rescued three mutant viruses (rBUNM-NSm
3, -NSm
4, and -NSm
5) that contain deletions in part of domains II, III, and IV, but we failed to recover viable virus from cDNA constructs that contain deletions in domains I and V or in which the entire NSm coding region was removed. Thus, we suggest that domain I acts as the internal signal sequence for NSm itself and domain V acts as the internal signal sequence for Gc, but this role is assumed by domain I in Maguari virus R2, which contains an extensive deletion in NSm (40). However, it is still not clear whether hydrophobic domains I and V remain attached to or are cleaved from the mature NSm protein. In snowshoe hare orthobunyavirus-infected cells, proteins of 11,000 molecular weight (11K) and 10K were mapped to the NSm region of the polyprotein, but the relationship between these proteins remains unknown (9). For Germiston orthobunyavirus, NSm appeared as a 16K doublet upon SDS-PAGE (12). These data may indicate that NSm does indeed undergo further processing.
The alignment in Fig. 1A shows that the sequence of the portion of NSm remaining in Maguari virus R2 is very similar to that in BUNV and extends into a conserved region in domain II. The maintenance of this conserved sequence in Maguari virus R2 and the failure to recover a recombinant BUNV with this region deleted (from pT7riboBUNM-NSm
1, pT7riboBUNM-NSm
2, and pT7riboBUNM
NSm) are indicative that this region may be critical in virus assembly. Note that, in pT7riboBUNM
NSm, domain V was retained, which permitted polyprotein cleavage and acquisition of endo H resistance (Fig. 4B) and partial Golgi localization (Fig. 4C). At present, it is unclear how Gc derived from pT7riboBUNM-NSm
3 can be correctly translocated into the cell membrane. The lack of transmembrane domain III suggests that the C terminus of the mutated NSm protein would be on the cytoplasmic side rather than in the lumen of the ER, and the program TMHMM gave ambiguous predictions on membrane topology (data not shown). However, since the precursor is cotranslationally cleaved, it is possible that the presence of domain V could allow Gc to translocate independently.
It is well known that viral assembly and morphogenesis involve interaction between viral proteins and interaction between the viral and host cell proteins (11, 39, 42, 55). NSm was shown to interact with itself and the cytoplasmic tail of Gn protein, interactions that would appear to be relevant (though not obligatory) to viral assembly. The interaction with the other nonstructural protein NSs is less obvious. NSs is a virulence factor and is involved in interferon antagonism and shutoff of host cell protein synthesis (3, 19, 53, 54, 58). NSm does not seem to be involved in interferon antagonism, as the NSm mutants had not lost their ability to inhibit the interferon response (unpublished data). Although host protein shutoff was significantly delayed by the mutant viruses, especially rBUNM-NSm
5, this is more likely because of slower growth of the viruses; however, other effects of NSm, such as on the ER stress response, cannot be discounted at this stage. Likewise, whether the deletions in NSm affect pathogenesis in animals requires further investigation.
In short, we characterized the BUNV NSm protein by determining the membrane integrality, topology, and role in virus replication. A novel virus assembly assay based on a reverse minigenome system was developed and applied to assess the role of NSm in virus assembly and packaging. Our results demonstrated that the N-terminal region of NSm plays an important role in assembly and morphogenesis of orthobunyaviruses.
The work was supported by Wellcome Trust grants to R.M.E.
Present address: Mayo Clinic College of Medicine, 200 First Street SW, Rochester, MN 55905. ![]()
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