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Journal of Virology, June 2006, p. 6106-6114, Vol. 80, No. 12
0022-538X/06/$08.00+0 doi:10.1128/JVI.02665-05
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Zhu-Nan Li,2,
Qizhi Yao,1,2
Chinglai Yang,2
David A. Steinhauer,2 and
Richard W. Compans2*
Molecular Surgeon Research Center, Michael E. DeBakey Department of Surgery, Baylor College of Medicine, Houston, Texas 77030,1 Department of Microbiology and Immunology, Emory University, School of Medicine, Atlanta, Georgia 303222
Received 21 December 2005/ Accepted 8 March 2006
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The Env protein of Friend murine leukemia virus has similar structural features to those of other retroviral envelope proteins (9, 41). However, the Env protein of MuLV undergoes an additional processing event during virus assembly that removes its C-terminal 16-amino-acid segment, designated the R peptide (12). It has been shown that the cleavage of the R peptide from the Env protein of MuLV is important in activating the fusion activity of the Env protein and for virus infectivity (12, 17, 30, 31, 39, 45). A point mutation (L627A) in the R peptide significantly reduced the inhibitory effect of the R peptide on MuLV Env-induced membrane fusion (46), indicating that the ability of the R peptide to suppress fusion is sequence dependent. Insertion mutations in the cytoplasmic tail of the MuLV Env protein upstream of the R peptide coding sequence, which may affect a predicted amphipathic helix formed by the connecting region, were also found to reduce the inhibitory effect of the R peptide (20).
Although several studies have analyzed the inhibitory effect of the R peptide on membrane fusion (20, 28, 31, 46), the molecular mechanism of inhibition remains unclear. One of the limitations of studies on membrane fusion by the MuLV Env protein is the lack of specific antibodies for detecting conformational changes in the external domain. Studies with the influenza virus HA protein have shown that it undergoes a conformational change at low pHs, which exposes the buried fusion peptide and expels it to the distal tip of the protein for insertion into the target membrane, where it induces fusion between viral and cell membranes (7, 34, 43, 44). Many studies have been done to analyze the low-pH-induced conformational change of the HA external domain, and a panel of monoclonal antibodies against the HA protein's external domain have been used for such studies (4, 38). To investigate the specificity of the inhibitory effect of the MuLV R peptide on the fusion activities of viral glycoproteins and to extend studies on the role of the influenza virus HA cytoplasmic tail in the fusion process, we constructed chimeric influenza virus-MuLV HA genes in which the full-length or R peptide-truncated cytoplasmic domain of the MuLV Env protein was attached to the end of the transmembrane domain or the end of the cytoplasmic tail of the influenza virus HA protein. We also determined the effect of the L627A mutant R peptide sequence on HA proteins. We determined the expression levels of the chimeric HA proteins by enzyme-linked immunosorbent assays (ELISAs) and Western blotting, analyzed the fusion activities of these proteins by syncytium formation and dye redistribution assays, and investigated the conformational changes of the chimeric HA proteins in response to different pHs.
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Plasmid construction and site-directed mutagenesis. The Pfu polymerase and DpnI for PCR were purchased from Stratagene (La Jolla, Calif.), and other restriction endonucleases and DNA modification enzymes used for plasmid construction were purchased from Roche (Indianapolis, Ind.). The wild-type H3 influenza virus (A/Aichi/2/68) HA gene was cloned into plasmid pRB21 as described by Blasco and Moss (3).
A gene encoding a chimeric HA protein containing the full-length cytoplasmic tail of the MuLV Env protein (HAM) was constructed by using PCR amplification. Two primers were synthesized, with the forward primer spanning the start codon of the wild-type HA gene and the reverse primer containing the coding sequence for the full-length cytoplasmic tail of MuLV Env following the end of the HA transmembrane domain. PCR was performed with the pGEM4-HA plasmid, in which the wild-type H3 HA gene was cloned into the pGEM4 plasmid, as the template, and the PCR product was purified and cloned into the pRB21 plasmid. The construction of the R peptide-truncated (HAM-13 or HAM-16) or L627A mutant (HAMRA) chimeric HA fusion gene was carried out by using a Stratagene Quick Change site-directed mutagenesis kit (Stratagene, La Jolla, Calif.). Two pairs of primers were synthesized which contained the desired mutation, with 10 to 15 bases of the complementary sequence on both sides, based on the cytoplasmic tail sequence of the wild-type Friend MuLV Env protein (18). The primers for the HAM-16 construct were as follows: forward primer, 5'-GGATCTCAGTAGTCTAGGCTTTAGTCGCG-3'; and reverse primer, 5'-CGCGACTAAAGCCTAGACTACTGAGATCC-3'. The primers for HAMRA were as follows: forward primer, 5'-CCAGGCTTTAGTCGCGACTCAACAATACCACCAGC-3'; and reverse primer, 5'-GCTGGTGGTATTGTTGAGTCGCGACTAAAGCCTGG-3'. PCR amplification was carried out by using the pRB21-HAM plasmid, which contains the full-length cytoplasmic tail coding sequence of the MuLV Env protein in the pRB21 vector, as the template, with 20 cycles of 94°C for 1 min, 55°C for 1 min, and 68°C for 10 min. The PCR products were incubated with DpnI at 37°C for 1 h to digest the methylated parental supercoiled double-stranded DNA and then transformed into Escherichia coli DH5
competent cells to repair the nicks in the mutated plasmids.
Constructs encoding the chimeric HA proteins containing the R peptide (HA+R) or the L627A mutant R peptide (HA+RA) attached at the end of the transmembrane domain of the HA protein were constructed by using PCR amplification. Two primers were synthesized, with the forward primer spanning the start codon of the wild-type HA gene and the reverse primer containing the coding sequence for the R peptide or L627A mutant R peptide sequence following the end of the HA transmembrane domain. PCRs were performed by using the pGEM4-HA plasmid as the template, and the PCR products were purified and cloned into the pRB21 plasmid. Similarly, to construct the chimeric HA protein retaining the full-length cytoplasmic tail of HA followed by the R peptide, the L627A mutant R peptide, or the upstream region of the R peptide in the MuLV Env cytoplasmic tail, pairs of primers were designed, with the forward primer spanning the start codon of the wild-type HA gene and the reverse primer containing the sequence encoding the R peptide, L627A mutant R peptide, or the upstream region of the R peptide sequence following the end of the HA cytoplasmic domain. PCRs were performed by using the pGEM4-HA plasmid as the template, and the PCR products were purified and cloned into the pRB21 plasmid as described previously. All constructs were sequenced to confirm the presence of the desired mutations and the absence of additional mutations.
Expression and cleavage of cell surface HA proteins. Cell surface HA proteins were detected by ELISA. Briefly, HeLa cells were infected with recombinant vaccinia viruses expressing chimeric HA proteins at a multiplicity of infection (MOI) of 5 at 37°C. At 12 to 18 h postinfection, cells were incubated with different monoclonal antibodies against the HA protein, and binding to the antibodies was detected by ELISA as described previously (4). The cleavage of HA proteins was detected by Western blotting. Briefly, CV-1 cells were infected with the recombinant vaccinia viruses expressing the chimeric HA proteins. At 12 to 18 h postinfection, cells were washed and treated with tosylsulfonyl phenylalanyl chloromethyl ketone (TPCK) trypsin (5 µg/ml) for 5 min at 37°C and lysed with lysis buffer, and proteins were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by Western blot analysis using a rabbit anti-HA polyclonal antibody.
Conformational-change assay and fusion assay of wild-type and chimeric HA proteins. The assay of HA conformational changes by ELISA was described previously (4, 38). Briefly, HeLa cells cultured in a 96-well plate were infected with a recombinant vaccinia virus expressing either WT or chimeric HA at an MOI of 5. At 12 to 18 h postinfection, the cell monolayers were treated with TPCK trypsin (5 µg/ml) for 5 min at 37°C. The cells were washed once and incubated with serial low-pH buffer (20 mM HEPES, 2 mM CaCl2, 0.15 N NaCl, 20 mM citric acid buffer) at 37°C for 1 min, followed by washing with neutral buffer and fixation in 0.05% glutaraldehyde-phosphate-buffered saline (PBS). Monoclonal antibodies HC3 (1:1,000) and HC68 (1:500) in 2% bovine serum albumin-PBS were added and incubated at 37°C for 1 h, followed by incubation with horseradish peroxidase-conjugated protein A (1:1,000) in 2% bovine serum albumin-PBS at 37°C for 1 h. After the cell monolayers were washed with PBS five times, 50 µl of substrate (0.015% 3,3',5,5' tetramethylbenzidine, 0.03% H2O2 in 20 mM citric acid buffer, pH 4.5) was added, and the reaction was stopped with 50 µl of 0.1 N H2SO4. The absorbance was detected at a wavelength of 450 nm by an ELISA reader. The fusion activities of the chimeric HA-MuLV Env proteins were determined by the following procedure. BHK21 cells were infected with recombinant vaccinia viruses expressing a wild-type or mutant HA gene at an MOI of 5. Cells were treated by trypsin cleavage at 37°C for 5 min, followed by exposure of the cells to low pH for 1 min at 37°C. Syncytium formation was observed under a phase-contrast microscope. Syncytia were defined as giant cells with more than four nuclei within one single membrane. Ten fields from each sample were randomly selected, and the fusion activity was calculated based on the average value for the ratio of nuclei in syncytia to total nuclei in the same field.
Fluorescent dye redistribution assay. We also determined fusion activity based on the redistribution of fluorescent dyes between chicken red blood cells (RBCs) or XC cells and target HeLa cells upon fusion (13), using the following procedures.
Labeling with rhodamine R-18. Fresh chicken RBCs were incubated with 15 µl of octadecyl rhodamine B (R-18) (1 mg/ml; Molecular Probes) in 10 ml PBS for 30 min at room temperature in the dark (19, 22). Unbound probe was absorbed by adding 30 ml of DMEM with 10% serum and shaking for 20 min at room temperature. RBCs were then washed five times in PBS and resuspended in PBS.
Labeling with the cytoplasmic probe calcein-AM. XC cells were selected for labeling with calcein-AM because of their size advantage and better fluorescence emission. XC cells were incubated with 5 µM of calcein-AM (Molecular Probes, Eugene, Oreg.) (21, 27) in 10 ml of DMEM for 45 min at 37°C in the dark, washed once, and then incubated in fresh complete medium containing 10% fetal bovine serum for another 30 min at 37°C. XC cells were washed three times with PBS and resuspended in DMEM.
Dye redistribution assay. Labeled RBCs or XC cells were used to overlay neuraminidase (NA; 30 mU)- and TPCK trypsin-treated HeLa cells expressing a wild-type or chimeric influenza virus HA protein and then incubated at 37°C for 15 min. Cells were then treated with low-pH or neutral buffer and incubated at 37°C to allow fusion to occur. Dye redistribution was monitored for 2 min after the cells were transferred to 37°C by using a Nikon fluorescence microscope. Fluorescein isothiocyanate and rhodamine optical filter cubes were used for observing green and red fluorescent dye transfer, respectively.
Reverse genetics. The chimeric HA-MuLV genes were introduced into the RNA expression plasmid pHH21, which contains the noncoding regions of both ends of the HA gene. Influenza viruses were rescued from plasmid cDNA essentially as described by Neumann et al. (26). Briefly, human 293T cells were transfected with 17 protein and RNA expression plasmids (kindly provided by Y. Kawaoka), using Mirus (Panvera) transfection reagent following the manufacturer's instructions. At 3 days posttransfection, cell supernatants were titrated on MDCK cells.
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FIG. 1. Sequences of the cytoplasmic domains (CT) of the wild-type and chimeric HA-MuLV Env proteins. The construction of the plasmids containing the chimeric HA genes is described in Materials and Methods. The designation of each chimeric protein is given on the left. The dotted boxes represent the transmembrane domain of the influenza virus HA protein, and the black box represents the transmembrane domain of the MuLV Env protein. The amino acid sequences of the HA and MuLV Env cytoplasmic tails are shown, and the R peptide coding region is underlined. The point mutation L627A is shown in bold.
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TABLE 1. Analysis of cell surface expression and conformation by ELISAa
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FIG. 2. Expression of wild-type and chimeric HA-MuLV Env proteins. CV-1 cells were infected with recombinant vaccinia viruses expressing wild-type or chimeric HA proteins at a multiplicity of infection of 5 at 37°C. At 12 to 18 h postinfection, the cells were treated in the presence or absence of 5 µg/ml TPCK trypsin, lysed, and collected, and the HA proteins were analyzed by Western blotting as described in Materials and Methods.
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FIG. 3. Syncytium formation assay of wild-type and chimeric HA proteins. BHK21 cells were infected with recombinant vaccinia viruses expressing wild-type or chimeric HA proteins. At 12 to 18 h postinfection, cells were treated with 5 µg/ml TPCK trypsin for 5 min and exposed to buffer at pH 7.0 or pH 5.1 for 1 min at 37°C. Heterokaryon cells were examined using a Nikon inverted phase-contrast microscope. Photographs were taken using a Nikon FX-35DX camera.
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FIG. 4. Summary of syncytium formation results for wild-type and chimeric HA proteins. BHK21 cells were infected with recombinant vaccinia viruses containing chimeric HA proteins at an MOI of 5 at 37°C. Cells were treated with trypsin for 5 min at 37°C before exposure to low-pH fusion buffer. Syncytium formation was examined in 10 different fields under a light microscope. Fusion activity was designated as follows, with data representing the averages of three independent experiments: ++++, >60% of nuclei were in syncytia; +++, 40 to 60% of nuclei were in syncytia; ++, 10 to 40% of nuclei were in syncytia; +, <10% of nuclei were in syncytia; , no syncytia were observed.
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For the third group, where the full-length cytoplasmic tail of the HA protein was intact, we found that the HACT+R protein, in which the R peptide sequence was attached directly at the end of the full-length HA protein, did not cause any syncytium formation at a low pH. The HACT+16 protein, in which the R peptide-deleted cytoplasmic domain was attached to the full-length HA protein, caused syncytium formation at a level of 5 to 10% that of the wild-type HA protein. HACT+RA, which contains the L627A point mutation, caused 60% syncytium formation compared to the wild-type HA protein. These results indicate that the R peptide specifically inhibits HA-induced cell fusion when attached directly at the end of the full-length HA protein, and the chimeric HA proteins containing the R peptide-deleted cytoplasmic tail of the MuLV Env protein or an L627A point mutation in the R peptide showed partial recovery of syncytium formation activity.
Conformational changes of chimeric HA proteins. To further investigate if the chimeric HA proteins undergo the conformational changes in the external domain which are required for membrane fusion, we examined the conformational changes of all chimeric HA proteins at different pHs, using the monoclonal antibodies HC3 and HC68. HC3 recognizes the HA protein at both acidic and neutral pHs, while HC68 only recognizes the HA protein at neutral pH. As shown in Table 2 and Fig. 5, all chimeric HA proteins showed conformational changes at low pH values similar to that of the wild-type HA protein, although the precise pH at which the conformational changes of the chimeric HA proteins occurred was slightly different from that for the wild-type HA protein. As shown in Table 1, most antibodies bound to chimeric HA proteins at similar levels to those for the wild-type HA protein; however, we found that HAM-16 showed less reactivity to the HC31 and HC68 monoclonal antibodies and that HA+RA showed less reactivity to the HC3 monoclonal antibody. Thus, the ratio of HC68/HC3 signals for HAM-16 was lower than those observed with the rest of the chimeric HA proteins and the ratio for HA+RA was higher than those for the rest of the chimeric HA proteins.
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TABLE 2. Determination of pH of conformational changea
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FIG. 5. Conformational changes of chimeric HA proteins. HeLa cells were infected with recombinant vaccinia viruses expressing chimeric HA proteins at an MOI of 5 at 37°C. At 12 to 18 h postinfection, cells were treated with trypsin for 5 min at 37°C before being exposed to low-pH fusion buffer, and conformational changes were detected by ELISA as previously described. The values indicate the ratios of reactivities with monoclonal antibodies HC68 and HC3 and represent the averages of three separate experiments.
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FIG. 6. Lipid mixing assay with wild-type and chimeric HA proteins. HeLa cells expressing the HA proteins were used as target cells, and chicken RBCs were labeled with R-18. Labeled RBCs were used to overlay the trypsin-treated HeLa cells and incubated at 37°C for 15 min to allow binding. The cells were then treated with low-pH or neutral-pH buffer before being transferred to 37°C for the lipid mixing assay. Fluorescent dye redistribution was monitored beginning 2 min after cells were transferred to 37°C. The photograph was taken 10 min after the cells were transferred to 37°C. The small bright red cells represent labeled RBCs, and the large bright red cells are target cells where the dye was transferred from RBCs. A, WT HA; B, HAM; C, HAMRA; D, HAM-13; E, HAM-16; F, HA+R; G, HA+RA; H, HACT+R; I, HACT+16; J, HACT+RA.
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FIG. 7. Small aqueous dye transfer assay. Calcein-AM-labeled XC cells were added to monolayers of trypsin-treated HeLa cells which expressed chimeric HA proteins, and cells were incubated at 37°C for 15 min. The cells were then treated with low-pH or neutral-pH buffer before being transferred to 37°C for the dye transfer assay. The aqueous dye transfer was monitored beginning 2 min after cells were transferred to 37°C. The photographs were taken 10 min after the cells were transferred to 37°C. The small fluorescent cells represent labeled XC cells, and the large fluorescent cells indicate dye transfer, as described in the legend to Fig. 6. A, WT HA; B, HAM; C, HAMRA; D, HAM-13; E, HAM-16; F, HA+R; G, HA+RA; H, HACT+R; I, HACT+16; J, HACT+RA.
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Reverse genetics. We generated recombinant influenza viruses containing the WT Aichi/2/68 HA gene and other gene segments derived from the WSN/1/33 virus (H3N1/WSN) at a titer of 103 to 104 PFU/ml by using the methods described by Neumann et al. (26). In order to further analyze the function of the chimeric HA-MuLV proteins, we attempted to rescue influenza viruses containing the chimeric HA-MuLV genes. However, we were not able to rescue the influenza viruses. Fujii et al. (10) have shown that the package signals of gene segments are located not only in the noncoding region but also near both ends of the coding region. Our results are consistent with their observations.
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Cytoplasmic tails of viral glycoproteins play an important role in regulating viral membrane fusion. Modification of the cytoplasmic tail has different consequences in different viral families. The long cytoplasmic tails of the retroviruses human immunodeficiency virus and SIV are thought to be involved in regulating virus infectivity and fusion activity, and deletion of the cytoplasmic tail has been shown to increase the fusion activity of the viral envelope protein (15, 25, 29, 32, 35, 36). Several studies have shown that the C-terminal R peptide of the MuLV Env protein's cytoplasmic tail exerts a potent inhibitory effect on MuLV-induced cell fusion (16, 24, 39). Truncation of the cytoplasmic domain of the human paramyxovirus type 2 F protein did not affect its fusion activity (47). In contrast, removal of the cytoplasmic tail of the human paramyxovirus type 3 F protein or the simian virus 5 (SV5) F protein debilitated the fusion activity (1, 47). For influenza virus, a previous study showed that elongation of the cytoplasmic tail of the HA protein by as little as one amino acid reduced fusion activity significantly, whereas the addition of five amino acids abolished fusion activity completely (27). Although replacing the cytoplasmic tail of the HA protein with the corresponding region of the Sendai virus F protein did not affect the fusion activity, replacement of the cytoplasmic tail with that of the CD4 molecule impaired fusion pore enlargement significantly (19). Our recent studies on SER virus, a paramyxovirus closely related to SV5, indicated that the long cytoplasmic tail of the SER F protein plays an important role in F protein-induced syncytium formation and that truncation or mutations of the cytoplasmic tail result in enhanced syncytium formation (33, 40). These studies indicate that the cytoplasmic tails of many viral envelope proteins play an important role in modulating viral membrane fusion. In our current study, we extended our understanding of the inhibitory effect of the MuLV R peptide by replacing the cytoplasmic tail of the influenza virus HA protein with that of the MuLV Env protein. We found that the R peptide specifically inhibited the fusion activity of the HA protein; however, when the R peptide was removed or mutated such that the chimeric HA protein retained the same length of cytoplasmic tail to that of the chimeric HA protein containing the R peptide, the resulting chimeric HA protein was fusogenic. These results indicate that the MuLV R peptide has a potent inhibitory role in the fusion activity of an unrelated viral glycoprotein, the HA protein, and that this inhibition is sequence specific and not length specific.
With constructs in which we directly attached the R peptide or L627A mutant R peptide to the end of the transmembrane domain of HA, we did not find specific inhibition of membrane fusion by the R peptide. One of the possible explanations is that the inhibitory effect of the R peptide involves sequences from the cytoplasmic tail region upstream of the R peptide in the MuLV Env protein. The sequence of the MuLV Env cytoplasmic tail indicates that the MuLV Env is predicted to form helical structures in the membrane-proximal region of the cytoplasmic tail, which plays important roles in connecting the cytoplasmic tail to the external domain and regulating the membrane fusion activity of MuLV Env. Without this connecting region, the R peptide may not form a stable helix structure and therefore may not be able to modulate the membrane fusion caused by the HA protein.
When exposed to a low pH after trypsin cleavage, the external domain of the HA protein undergoes a conformational change, which is required for fusion pore formation, leading to complete membrane fusion (7, 34). We found that all of the chimeric HA proteins that we constructed undergo conformational changes similar to those of the wild-type HA protein, although the pH values at which this occurs are slightly different from that for the wild-type HA protein. We also found that the R peptide did not affect hemifusion and small pore formation, which are early stages of the membrane fusion process, by the chimeric HA proteins. It is possible that a late stage in HA-induced membrane fusion might be altered by the MuLV R peptide, resulting in impaired fusion activity of the HA protein. According to current fusion models (2, 6, 7, 8, 34), after conformational changes, class I viral fusion proteins form rod-like structures with a central coiled coil and antiparallel polypeptide chains that pack against it. This generates a trimer-of-hairpins structure that brings the two membranes together at the same end of the helical rods to initiate the fusion process. It will be interesting to determine whether the R peptide has an impact on the proper formation of the low-pH structure of the HA external domain in the chimeric proteins, thus affecting a later phase of the fusion process.
We thank Kim M. Gernert (Emory Molecular Modeling Center) for helpful discussions concerning molecular modeling of the MuLV Env protein and the HA protein. We thank Y. Kawaoka for providing the plasmids for reverse genetics and Tanya Cassingham for assistance in preparing the manuscript.
M.L. and Z.-N.L. contributed equally to this work. ![]()
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