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Journal of Virology, May 2006, p. 4792-4800, Vol. 80, No. 10
0022-538X/06/$08.00+0 doi:10.1128/JVI.80.10.4792-4800.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Shwu-Yuan Wu,3
Cheng-Ming Chiang,3
Thomas R. Broker,1 and
Louise T. Chow1*
Departments of Biochemistry and Molecular Genetics,1 Pathology, University of Alabama at Birmingham, 1918 University Boulevard, Birmingham, Alabama 35294-0005,2 Department of Biochemistry, Case Western Reserve University, School of Medicine, 10900 Euclid Avenue, Cleveland, Ohio 44106-49353
Received 15 October 2005/ Accepted 20 February 2006
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, the topoisomerase I, and the single-stranded DNA binding protein RPA to initiate replication (7, 15, 16, 33, 36, 39).
The E2 protein consists of three domains, an amino-terminal trans-acting domain (abbreviated hereafter as the N domain), a flexible hinge (H) domain, and a carboxyl-terminal (C) domain. Both the N domain of approximately 200 amino acids and the C domain of approximately 90 residues are relatively conserved in all papillomaviruses, while the H domain is variable in length and sequence. In HPV-11 E2, the H domain contains the nuclear localization sequence and also associates with nuclear matrix (59). The E2N domain interacts with the helicase domain of the E1 protein; E2 protein lacking the N domain does not support HPV DNA replication (1, 2, 12, 32, 34). The E2C domain is responsible for dimerization and binding to the palindromic consensus E2BS in the ori. The crystal structures of the dimeric C domains of several papillomaviruses have been elucidated (8, 20, 21). The dimer interface contains an eight-stranded ß-barrel flanking two DNA binding
-helices, one from each monomer (see Fig. 2C).
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FIG. 2. Delineation of the mitotic-spindle localization domain in HPV-11 E2C. (A and B) Western blots of SDS-polyacrylamide gel electrophoresis of transfected COS7 cell lysates by using an antibody to GFP. (A) an SDS-4% to 12% polyacrylamide gradient gel. (B) An SDS-10% polyacrylamide gel. (C) Localization of selected GFP fusion peptides. Left column, GFP-E2C; middle column, ß-tubulin (Cy3) with DAPI-stained chromosomal DNA (blue); right column, merged images. The cells were in prometaphase (a) or metaphase (b and c). (D) Crystal structure of the HPV-16 E2C dimer. The DNA binding helices are colored red, and the spindle association domain is white (adapted from Hegde and Androphy [22]).
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For the HPV-11 E2 protein, the C and N domains each independently associate with the mitotic spindles (48). In this work, we show that the localization of HPV-11 E2 is dynamic through different phases during mitosis and that it does not associate with Brd4. In addition, we delineate the segment in the HPV-11 E2C domain critical for mitotic spindle localization to a segment spanning residues 285 to 308. This spindle localization motif is highly conserved in the C domain of the HPV-16, HPV-18, and BPV-4 E2 proteins. Deletion analyses demonstrated that this segment is necessary for their spindle localization as well. Reciprocal chimeric E2C proteins of HPV-11 and BPV-1 supported this conclusion. We discuss the implications of these findings.
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Plasmid construction and mutagenesis. pGFP-H11 E2C (spanning amino acid residues 285 to 367) was described previously (48). Plasmids expressing GFP fusions to E2C proteins of HPV-16 (pGFP-H16 E2C, residues 287 to 365), HPV-18 (pGFP-H18 E2C, residues 288 to 365), BPV-4 (pGFP-B4 E2C, residues 327 to 408), and BPV-1 (pGFP-B1 E2C, residues 327 to 410), as well as to deletion mutants of E2C proteins of these four viruses, pGFP-H11 E2C:285-308, pGFP-H11 E2C:285-318, pGFP-H11 E2C:285-328, pGFP-H11 E2C:285-338, pGFP-H11 E2C:285-348, pGFP-H11 E2C:285-358, pGFP-H11 E2C:295-367, pGFP-H16 E2C:296-365, pGFP-H18 E2C:297-365, and pGFP-B4 E2C:338-408, were each constructed by PCR amplification of the appropriate E2 fragments and placed in frame into the BglII and EcoRI sites of the pEGFP-C1 plasmid (Clontech, Mountain View, CA). pGFP-H11 E2H+:202-295, which extends HPV-11 E2H (residues 202 to 284) to include the first 11 residues of the C domain, was similarly prepared. The plasmids expressing the GFP fusions of the point mutations in HPV-11 E2HC (residues 285 to 367), namely, pGFP-H11 E2HC:V287A, pGFP-H11 E2HC:Q288A, pGPF-H11 E2HC:L289A, pGFP-H11 E2HC:Q290A, and pGFP-H11 E2HC:S293A, were constructed using PCR mutagenesis. pGFP-H11 E2HC:A7 contained alanine residues at positions 287 through 293. All of the above-mentioned clones, except pGFP-11H+:202-295, HPV-11E2C:285-308, and HPV-11E2C:295-367, contained an STR tag at the carboxyl terminus as previously described (48). Expression vectors of chimeric E2C were generated by PCR mutagenesis. For GFP fusion to HPV-11/BPV-1 E2C (pGFP-H11/B1 E2C), the forward primer incorporated nucleotides encoding amino acid residues 285 to 295 of HPV-11 E2, replacing the corresponding sequence of BPV-1 E2C. The reciprocal chimera, pGFP-B1/H11 E2C, was constructed using a forward primer that contained nucleotides encoding amino acid residues 327 to 337 of BPV-1 E2, followed by nucleotides encoding HPV-11 E2C. GFP-Brd4 was generated by PCR. The Brd4 coding region was amplified using a forward primer, GAATTCGTCTACCGAGAGCGGC, containing an EcoRI restriction site, and a reverse primer, GGATCCTCAAAAAAGATTTTCTTCAAATATTG, containing a BamHI restriction site. The PCR product was purified, digested with EcoRI and BamHI, and then inserted in frame into the pEGFP-C1 vector (Clontech, Mountain View, CA) at the same sites.
Western blots. COS7 cells separately transfected with expression vectors of various pGFP-E2C fusion proteins were grown for 24 h and lysed with RIPA buffer (0.15 mM NaCl, 0.05 mM Tris-HCl, pH 7.2, 1% Triton X-100, 1% sodium deoxycholate, 0.1% sodium dodecyl sulfate [SDS]) containing protease inhibitors (Sigma, St. Louis, MO). Equal amounts of total proteins were separated on a 4 to 12% polyacrylamide-SDS gel (Fig. 2A) or by 10% SDS-polyacrylamide gel electrophoresis (see Fig. 2B, 3C, 4C, and 5B) and transferred to a nitrocellulose membrane by Western blotting. The nitrocellulose membranes were probed with a monoclonal antibody specific for GFP, followed by an anti-mouse immunoglobulin G antibody conjugated with peroxidase and developed with an enhanced chemiluminescence detection system (ECL; Amersham Pharmacia, Piscataway, NJ).
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FIG. 3. Site-directed mutagenic analysis of the spindle localization domain in HPV-11 E2C. (A) Sequence of and mutations in the amino-terminal region of E2C. In GFP-H11E2-HC:A7, residues 287 to 293 were replaced with seven alanine residues. In others, individual residues were separately mutated as described in Results. (B) Localization of representative mutated fusion proteins. Left column, GFP-E2C; middle column, ß-tubulin (Cy3) with DAPI-stained chromosomal DNA (blue); right column, merged images. The cells were approaching metaphase. (C) A Western blot of transfected COS7 cell lysates with an antibody to GFP.
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FIG. 4. Conservation of the spindle localization domain in E2C proteins of HPV-11, HPV-18, HPV-16, and BPV-4, but not in that of BPV-1. (A) Sequence comparison of the amino-terminal portion of E2C implicated in colocalization with the mitotic spindles from papillomaviruses examined in this report. (B) Localization of GFP fused to the E2C domain of HPV-16, HPV-18, or BPV-4 (a, c, and e) and mutations with the putative spindle localization domain deleted (b, d, and f). Left column, GFP-E2C; middle column, ß-tubulin (Cy3) with DAPI-stained chromosomal DNA (blue); right column, merged images. The cells were in prometaphase (b, c, and e) or approaching or in metaphase (a, d, and f). (C) Western blot of transfected COS7 cell lysates with an antibody to GFP.
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FIG. 5. Structure and properties of reciprocal chimeric HPV-11 and BPV-1 E2C fused to GFP. (A) Schematic diagram of GFP fusions of HPV-11 E2C, BPV-1 E2C, and the reciprocal chimeric H11/B1 E2C and B1/H11 E2C. (B) Western blot of transfected COS7 cell lysates using an antibody to GFP. (C) Localization of the fusion proteins in transfected cells. Left column, GFP-E2C; middle column, ß-tubulin (Cy3) with DAPI-stained chromosomal DNA (blue); right column, merged images. The cells were in prometaphase (b), metaphase (c), or anaphase (a).
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FIG. 1. HPV-11 E2 localization is dynamic during mitosis and does not colocalize with Brd4. (A to C) Three images are presented for each cell, and each cell is denoted by a lowercase letter. (A and B) HPV-11 E2 localization is dynamic throughout the different phases of mitosis. Human 293(11-E2) cells that harbor FLAG-tagged HPV-11 E2 under the control of a tetracycline-regulated promoter were probed (A) with antibodies to HPV-11 E2 and ß-tubulin (left column, E2 [Alexa488]; middle column, ß-tubulin [Cy3] and DAPI-stained chromosomes [blue]; right column, merged images) and (B) with antibodies to the FLAG epitope and ß-tubulin (left column, FLAG [Alexa488]; middle column, ß-tubulin [Cy3] and DAPI-stained chromosomes [blue]; right column, merged images). (C) E2 does not associate with GFP-Brd4. 293(11-E2) cells were transfected with pEGFP-Brd4 and induced for HPV-11 E2 expression. The cells were stained with an antibody to ß-tubulin (a) or an antibody to E2 (b). Both cells were in late anaphase. (Row a) Left panel, GFP-Brd4; middle panel, ß-tubulin (Cy3) with DAPI-stained chromosomal DNA (blue); right panel, merged images. (Row b) Left panel, GFP-Brd4; middle panel, E2(Cy3); right panel, merged images with DAPI-stained chromosomal DNA (blue).
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Residues 285 to 308 of HPV-11 E2 are necessary for localization to the mitotic spindles. To localize the region of HPV-11 E2C (residues 285 to 348) responsible for its colocalization with the mitotic spindles, we generated a series of carboxyl-terminal truncations of GFP-H11E2C, yielding the following clones: GFP-H11 E2C:285-338, E2C:285-328, E2C:285-318, and E2C:285-308. Each expressed a fusion protein of the expected length in Western blots (Fig. 2A). The expression clones were each transfected into COS7 cells. The cells were extracted with microtubule-stabilizing buffer and stained for mitotic spindles using an anti-ß-tubulin antibody as described above. Each of the truncated fusion proteins was seen on the mitotic apparatus, suggesting that the spindle localization domain was within residues 285 to 308 (Fig. 2Ca and data not shown). As inferred from the crystal structure of HPV-16 (Fig. 2D), residues 285 to 295 of HPV-11 E2 are expected to form a ß-sheet, with residues 296 to 308 constituting the DNA binding helix. We reasoned that the DNA binding helix was not likely to be involved in spindle localization as well. Thus, the peptide spanning residues 285 to 295 was a logical candidate.
To test this hypothesis, we generated two additional fusion proteins. GFP-H11 E2C:295-367 had the first 11 residues of E2C deleted, and it no longer colocalized with the spindle fibers (Fig. 2Cb). HPV-11 E2H (spanning residues 201 to 284) did not colocalize with mitotic spindles (48). However, the extended hinge region (GFP-H11 E2H+:201-295) gained the ability to localize to the mitotic spindles (Fig. 2Cc). The expression of both fusion proteins was confirmed by Western blot analysis (Fig. 2B). Collectively, these results demonstrate that, for HPV-11 E2C, residues 285 to 308, and possibly as few as residues 285 to 295, are necessary and sufficient for localization to the mitotic spindles.
Mutational analysis of the HPV-11 E2C spindle localization domain. We generated a number of single point mutations in HPV-11 E2HC (Q288A, L289A, Q290A, D292A, S293A, and N294A), as well as a clone containing seven alanines (HPV-11 E2HC:A7), in the spindle localization motif delineated above, each as a GFP fusion protein (Fig. 3A). We observed that none of the individual point mutations abrogated the ability of the fusion protein to colocalize with the mitotic spindles (Fig. 3Ba and b and data not shown). In contrast, HPV-11 E2HC:A7 no longer colocalized with the mitotic spindles, confirming the importance of the region (Fig. 3Bc). Western blot analyses demonstrated that the mutated proteins were synthesized in transfected cells (Fig. 2C).
HPV-16 E2C, HPV-18 E2C, and BPV-4 E2C colocalize with the mitotic spindles. The E2 proteins of HPV-16 and the HPV-18 colocalize with the mitotic spindles (48). The spindle localization domain of HPV-11 E2C is highly conserved among these three viruses (Fig. 4A). To test if the conserved region in HPV-16 E2C and HPV-18 E2C also mediates this localization, we generated GFP fusion constructs of the E2C domains of these HPVs, as well as truncations that removed the segment spanning the putative mitotic-spindle localization domain. Only the fusions with the full-length E2C proteins, H16 E2C:287-365 and H18 E2C:288-365, colocalized with the mitotic spindles (Fig. 4B, rows a and c), whereas the truncated fusion proteins H16 E2C:296-365 and H18 E2C 297-365 did not (Fig. 4B, rows b and d). Western blotting showed that all four GFP-E2C fusion proteins were synthesized in the transfected cells (Fig. 4C).
Interestingly, the E2C domain of BPV-4 also contains a sequence very similar to the spindle localization domain of HPV E2C proteins (Fig. 4A). We were curious whether BPV-4 E2C also colocalizes with the mitotic apparatus. To test this possibility, we generated GFP fusion constructs of BPV-4 E2C (pGFP-B4 E2C, residues 327 to 408), as well as a truncation, BPV-4 E2C:336-408. The full-length E2C protein was able to colocalize with the mitotic spindles (Fig. 4B, row e), whereas the truncated form did not (row f). Western blotting showed that both proteins were expressed (Fig. 4C). These observations were corroborated by using an epitope-tagged BPV-4 E2C protein (data not shown). Collectively, these results support the notion that BPV-4 E2C colocalizes with the mitotic spindles and that GFP has no role in this localization.
A chimera of HPV-11 and BPV-1 E2C colocalizes with the mitotic spindles. The N domain of BPV-1 E2 mediates the association with the mitotic chromosomes via the cellular protein Brd4, whereas the C domain is not involved (57). We constructed a GFP fusion to the E2C domain of BPV-1 (GFP-B1 E2C). Indeed, in the absence of extraction, it did not associate with either the mitotic spindles or the mitotic chromosomes but was diffusely distributed throughout the cell with a reduced intensity in areas occupied by the chromosomes, due to an excluded-volume effect (data no shown). Upon extraction, little GFP-B1 E2C remained in the cell (Fig. 5Ca). Sequence alignment indicated divergence in the HPV-11 E2C spindle localization domain compared to the corresponding region in BPV-1 E2C (Fig. 4A). To examine if this difference contributed to the distinct localization patterns of the HPV-11 and BPV-1 E2C proteins, we generated two chimeric E2C proteins. In the GFP-H11/B1 E2C chimera, the first 11 amino acids from BPV-1 E2C were replaced with the spindle localization domain of HPV-11 E2C. In the reciprocal chimera, GFP-B1/H11 E2C, the spindle localization domain of HPV-11 E2C was replaced with the corresponding region from BPV-1 E2C. Western blotting confirmed the synthesis of GFP-BPV-1 E2C, GFP-H11/B1 E2C, and GFP-B1/H11 E2C (Fig. 5B). The chimeric proteins were analyzed for the ability to colocalize with the mitotic spindles in transfected cells after extraction to remove any unattached GFP-E2C protein. Chimera GFP-H11/B1 E2C was observed to colocalize with the mitotic-spindle fibers (Fig. 5Cb), whereas the reciprocal chimera, GFP-B1/H11 E2C (Fig. 5Cc), exhibited no discernible patterns of localization, similar to GFP-BPV-1 E2C (Fig. 5Ca). These experiments verified our conclusion that residues 285 to 295 of HPV-11 E2C are critical for mitotic-spindle localization.
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It is intriguing that a very similar and dynamic localization during mitosis has been reported for human Orc6, one of the subunits of the cellular origin recognition complex, the counterpart of the HPV E2 protein. Chromatin-bound Orc complexes serve as sites for the assembly of the prereplication complexes (5). During early metaphase, the Orc6 protein localizes to the kinetochores, but at anaphase and telophase, as the chromosomes segregate, Orc6 relocalizes to the central spindle microtubules. Finally, during cytokinesis, the Orc6 protein can be seen in the midbody (41). The dynamic E2 localization during mitosis suggests that E2's apparent association with the spindle fibers might be mediated by one or more passenger proteins. Indeed, in vitro-translated E2 protein did not bind in vitro-translated ß-tubulin (our unpublished observations). Passenger proteins are involved in coordinating events during mitosis and cytokinesis, regulating the movements of both the chromosomes and the mitotic apparatus. Several passenger proteins, including Aurora B (6) and Polo-like kinase (50), exhibit dynamic localization with some similarity to that observed for the E2 protein. Notably, Aurora B, which forms a complex with INCENP during mitosis, localizes to the kinetochores during prometaphase and then relocalizes to the central spindle fibers during anaphase and telophase (6). Interestingly, Aurora B plays a crucial role in regulating plasmid segregation for the EBV genome. EBV nuclear antigen 1 (EBNA-1) associates with the mitotic chromosomes in a process mediated by the human EBNA-1 binding protein 2 (hEBP2) (53). Silencing Aurora B caused hEPB2 to disassociate from the metaphase chromosomes, implicating this kinase in the segregation of EBV DNA, along with hEBP2.
By deletion and point mutations, the mitotic-spindle localization domain of HPV-11 E2C has been delineated to residues 285 to 308, and possibly as few as residues 285 to 295. The region as a whole is involved in mitotic-spindle association, because individual point mutations had no effect on this property. Furthermore, the domain is conserved, in both sequence and function, in the E2C peptides of HPV-16, HPV-18, and BPV-4 and is necessary to confer the ability to localize on the spindle apparatus. We propose that HPV-11, HPV-16, HPV-18, and BPV-4 may also use the abilities of the respective E2 proteins to associate with mitotic spindles as a means to maintain their extrachromosomal plasmids during cell division. Upon completion of mitosis, the viral plasmid DNA would presumably travel along the microtubules back into the nuclei of the daughter cells.
These patterns of localization of HPV E2 are different from that of BPV-1 E2, which is tethered to the mitotic chromosomes via an interaction with Brd4 (4, 56). Through chimeric E2C proteins, we showed that this spindle localization domain of HPV-11 E2C is sufficient to confer spindle localization on BPV-1 E2C, which by itself is diffusely distributed. We also investigated the localization patterns of HPV-11 E2 relative to GFP-Brd4 through different phases of mitosis. No colocalization of the FLAG-tagged HPV-11 E2 and GFP-Brd4 was observed throughout mitosis, and Brd4 remained associated exclusively with the chromosomes.
Intriguingly, HPV-16 and HPV-18 can induce carcinomas. We have previously suggested that, in addition to the oncogenic properties of the HPV E6 and E7 proteins, the association of the E2 protein with the mitotic spindles might play an important role in the carcinogenic conversion of the infected tissues (48). Oncogenic transformation by the high-risk HPV types results when the viral oncoproteins E6 and E7 are overexpressed in the dividing basal cells. High levels of E7 lead to extended periods of cellular proliferation by inactivating the pRB family of proteins, whereas overexpression of E6, which degrades the p53 tumor suppressor, leads to the survival of cells harboring chromosomal damage by abrogating various check points and apoptosis (60). Moreover, both E6 and E7 can independently induce chromosome instability (18). Intriguingly, BPV-4 can also induced carcinomas, but by a hit-and-run mechanism (9).
How might the E2 protein contribute to carcinogenesis? It is our opinion that, initially, both the E1 and E2 proteins might be expressed from intact copies of integrated HPV genomes. The repeated reinitiation of replication from the viral ori could generate unfinished replication bubbles susceptible to breakage. More importantly, the viral origin in integrated viral genomes may act as a virocentromere (48). During mitosis, the E2 protein would be able to bind to the viral origin as well as to the mitotic apparatus. If the virocentromere and the chromosomal centromere, on which the kinetochore assembles, are pulled to opposite poles during chromosome segregation, a break in the DNA might occur. Broken DNA ends are prime targets for recombination by nonhomologous end joining, thereby generating dicentric chromosomes and initiating breakage fusion bridge cycles (37). Breakage could also occur when the virocentromere-bound E2 relocalizes to the central spindle microtubules at telophase and cytokinesis, away from the rest of the chromosomes. Chromosome fragments could be lost when they fail to be included in the newly reformed nuclei of the daughter cells. Any of these events would result in genome instability and accelerate viral oncogenesis. Our hypothesis explains why, in patient lesions and in a cell line, HPV DNA integration is invariably and quickly accompanied by host chromosome instability (23, 38, 40).
Our hypothesis would also account for additional attributes consistently observed in HPV-induced cancers, cancer cell lines, and keratinocytes immortalized in vitro by HPVs. For instance, singly or tandemly integrated viral genomes are always disrupted in the E1 or the E2 gene, abolishing the expression of E2 or both genes (52). A predominant viral oncogene transcript that contained downstream host sequence and a polyadenlyation site was invariably detected in these cells (58). Such chimeric RNAs are thought to confer higher mRNA stability than the normal viral mRNA, leading to elevated levels of viral-oncoprotein expression and a growth advantage for the cell (26, 27). Indeed, in situ hybridization studies demonstrated that, in HPV-immortalized cells, cancers, and cervical-cancer cell lines, there is usually one transcription center, regardless of the copy number or number of integration sites. Moreover, in tandemly integrated viral genomes, the transcriptionally active copy was always located at the downstream integration site, which could not express an intact E2 protein. All the upstream copies, each containing an intact E2 gene, were silenced by DNA methylation (49). We suggest that E2 expression from integrated viral DNA has to cease in the cancer or immortalized cell which eventually emerges to avoid mitotic catastrophe induced by the association of E2 with the mitotic apparatus. However, it must also be noted that HPV-11 does not induce carcinomas in infected patients. This difference can be readily explained by the fact that the HPV-11 E6 and E7 proteins do not inactivate p53 and pRB as efficiently as those of the high-risk viruses, and in particular, E6 does not cause the degradation of p53. Thus, the low-risk HPV oncoproteins would not be able to overcome the various mitotic checkpoints or prevent apoptosis. The hypothesis that E2 contributes to the initial stage of HPV oncogenesis remains to be tested.
We thank Keiko Ozato for Brd4 cDNA, Saveria Campo for the BPV-4 E2 clone, and Robert J. Carter for discussion.
Present address: Department of Internal Medicine, 660 S. Euclid Ave., P.O. Box 8121, Washington University in St. Louis, St. Louis, MO 63110. ![]()
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