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Journal of Virology, May 2006, p. 4664-4672, Vol. 80, No. 10
0022-538X/06/$08.00+0 doi:10.1128/JVI.80.10.4664-4672.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Program in Cancer Biology, Division of Human Biology,1 Program in Epidemiology, Division of Public Health Science, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109-1024,2 Departments of Epidemiology,3 Microbiology, University of Washington, Seattle, Washington4
Received 31 October 2005/ Accepted 23 February 2006
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The vaccines that are now being evaluated are composed of the HPV major late protein (L1) for each type. This protein self-assembles into empty capsids, also referred to as virus-like particles (VLPs) (10, 13). Early indications are that VLP vaccines are safe and provide protection from persistent HPV infection in a type-specific fashion (11, 24). Animal studies suggest that protection from papillomavirus infection is mediated by antibodies (2, 23).
Type-specific antibodies recognize conformation-dependent epitopes involving the surface-exposed loops of L1 proteins that exhibit considerable amino acid sequence variation between types (7, 8, 17, 18). It has been suggested that an epitope composed of the FG and HI loops is immunodominant (8) for HPV16. However, binding of HPV16-specific immune human sera was not transferred to HPV11 VLPs that had HPV16 substitutions for these regions (26). Studies of HPV6 and -11 monoclonal antibody (MAb) binding specificity indicated that the BC, DE, and HI loops were often important for these types (14-17). The DE loop of HPV6 was also found to be important for recognition by some human sera (18).
Neutralizing epitopes have been mapped to one or a combination of the BC and EF loops of HPV6 (17), the DE and HI loops of HPV11 (14, 15, 16), and the FG and HI loops of HPV16 (8, 20). Neutralizing MAbs have been found that recognize conformation-dependent epitopes consisting of only one loop (15), but more commonly two noncontiguous loops constituted the epitope (8, 17). An interesting study by Sadeyen et al. (22), in which an HBV epitope was inserted into each of the five loops of HPV16 L1, indicated that amino acid changes on any of the loops diminished the HPV16-specific immunogenicity of VLPs. However, insertions into the FG loop reduced the HPV16-specific immunogenicity to a greater extent than insertions into other loops.
To identify residues on the surfaces of HPV16 virions important for neutralizing activity, we employed a series of HPV16/31 hybrid VLPs. These particles, which had one or more loops of HPV16 replaced with an HPV31 loop(s) or, in one case, an HPV52 loop, were used to adsorb antibodies from human sera. Treated sera were then tested for activity in a pseudovirus neutralization assay. This approach permitted us to determine which loops were recognized by neutralizing antibodies and to address the question of whether there is a dominant neutralizing epitope on HPV16.
(These data were presented in part at the 22nd International Papillomavirus Meeting, Vancouver, Canada, May 2005.)
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Antibodies and sera. Human sera were obtained from two studies: a natural history study of HPV infection among university women (27) and a case control study of anogenital cancers (5). All sera had been previously screened for HPV16 antibodies by enzyme-linked immunosorbent assay (ELISA) (3). Sera that had reacted most strongly by ELISA to HPV16 VLPs and for which there was sufficient volume were chosen for evaluation. Two sera were selected from one woman for whom there was over 9 years of follow-up. Ascites or hybridomas were generously provided by Neil Christensen (Hershey Medical Center, Hershey, PA) (H16.V5, H31.A4, and H16.U4) and Richard Roden (Johns Hopkins University, Baltimore, MD) (H16.E70). The institutional review board of the Fred Hutchinson Cancer Research Center or the University of Washington approved all research protocols.
Virus-like particles. The creation and purification of the VLPs used here have been previously described (6). Briefly, mutations were created in the HPV16 L1 sequence in the pDest8 vector (Invitrogen) using primers that were designed to replace the HPV16 amino acid sequences with homologous sequences from HPV31 (16:DE, 16:EF, 16FG, 16:HI, 16:410, and 16:430) or HPV52 (16:BC). The rational for generating 16:BC using sequences from HPV52 was that we had been interested in residue 50 (6) (residue 50 is Phe for types 16 and 52, but the type 31 residue 50 is Tyr). However, residue 50 was not of particular interest in this study. A similar procedure was followed to alter the HPV31 L1 sequence to contain HPV16 on the FG and HI loops. After the plasmids were sequenced, recombinant bacmids were created using the Bac-to-Bac expression system (Invitrogen). Sf9 cells were transfected with bacmid DNA, and after several rounds of amplification, a baculovirus stock was generated. Sf9 cells were infected, and particles were purified by centrifugation over sucrose and CsCl gradient centrifugation (6).
Neutralization assay. The preparation of pseudovirus and neutralization assays were performed essentially as described by Pastrana et al. (19). Briefly, pseudovirus stocks were prepared by transfection of 293TT cells with vectors expressing HPV16 L1, HPV16 L2, and secreted alkaline phosphatase (p16L1h p16L2h and pYSEAP; provided by John Schiller). Three days later, the cells were harvested and pseudovirus was isolated over Optiprep (Accurate Chemical, Westbury, NY) gradients. Fractions from the Optiprep gradients were tested for the presence of pseudovirus by infection of 293TT cells in 96-well plates and assayed for secreted alkaline phosphatase activity in the supernatant after 3 days of incubation.
Neutralization assays were performed by incubation of diluted human sera or ascites with diluted pseudovirus stocks for 1 h on ice in a total volume of 120 ml of tissue culture medium without phenol red. These incubations were performed in silanized polypropylene 96-well plates (Fisher Scientific, Pittsburgh, PA). One hundred microliters from each well was transferred to a 96-well tissue culture plate that had previously been seeded with 293TT cells. The method for detection of secreted alkaline phosphatase in supernatants was a modification of that of Pastrana et al. (19). Their procedure recommended the use of a luminescent assay; however, we found that use of a standard alkaline phosphatase substrate gave equivalent results at considerably reduced cost (data not shown). To detect alkaline phosphatase, 30 µl of supernatant was transferred from the infected 293TT cells into a standard ELISA plate. One hundred microliters of developer (0.1 M CO3, 10 mM MgCl2, 4.3 mg/ml Sigma 104-Phosphate [Sigma Chemicals Inc., St Louis MO], pH 9.5) was added to each well, and the plates were incubated at room temperature. Optical density readings (405 nm) were recorded at 30 min and 1 h using a microplate reader (ELx 808; Bio-Tek Instruments Inc., Winooski, VT).
Experiments designed to identify amino acids recognized by neutralizing sera were performed in one of two ways. The first approach was to serially dilute VLPs on polypropylene plates in tissue culture medium (30 µl per well). Sera diluted in tissue culture medium were then added in 30 µl at a final concentration of 1:100 (human sera) or 1:75,000 (MAb 16.V5). The plates were sealed and incubated overnight at 4°C. The following day, 60 µl of diluted pseudovirus stock was added to each well, and the plates were incubated on ice for 1 h. The contents of each well (100 µl) was transferred to a tissue culture dish (96-well plate) previously seeded with 293TT cells. Neutralization assays were conducted as described above. The second approach was to serially dilute sera (or MAb) on silanized polypropylene plates in tissue culture medium before adding VLPs at a concentration determined to be optimal (final volume, 60 µl). The plates were sealed and incubated overnight at 4°C. Diluted pseudovirus stock solution was added, and neutralization assays were conducted as described above. Because of the propensity of VLPs to aggregate, the mass of protein used may not reflect the quantity of available epitopes. Therefore, the quantity of VLPs in each preparation was compared by ELISA rather than by protein assays.
The reproducibility of the assay was assessed by repeatedly performing the neutralization assay using several VLP preparations and the H16.V5 antibody (because of the large amount of serum used in these experiments, we were not able to routinely assay human sera repeatedly). The assay was performed once in triplicate using four antigens on separate plates to assess intra-assay variation and on 4 days to assess interassay variation. The coefficient of variation of triplicates was 7.38% (range, 5.82% to 8.97% for four antigens). The interassay coefficient of variation was 18.73% (range, 15.90% to 22.75% for four antigens), with the same pattern of inhibition consistently observed.
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FIG. 1. Diagram of the method used for identification of neutralizing epitopes. Antibodies and VLPs were incubated together overnight as described in Materials and Methods. In the presence of wild-type HPV16 VLPs or hybrid VLPs that retained neutralizing epitopes, the effective concentrations of neutralizing antibodies are reduced. Pseudovirus was then added, the cells were infected, and secreted alkaline phosphatase activity was measured 3 days postinfection. If pretreatment of sera failed to adsorb neutralizing activity, low alkaline phosphatase activity was detected. Conversely, high alkaline phosphatase activity indicated a low concentration of neutralizing antibodies and that the VLPs used for pretreatment retained neutralizing epitopes.
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It was important to confirm that all VLPs were in a native conformation. We have shown previously that all of the hybrid VLPs used in these experiments folded into a native conformation by binding to MAbs that recognize conformation-dependent epitopes and by resistance to proteolysis by trypsin (6). To confirm that the hybrid VLPs used here retained native epitopes, they were reacted with MAbs that are known to bind HPV16 or HPV31 only in a native conformation (Fig. 2A). Although all hybrid and wild-type VLPs reacted with MAbs as predicted, it should be noted that the relative concentrations of 16:HI and 16:FG/HI were much lower than for 16:FG (Fig. 2A, H16U4 graph).
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FIG. 2. (A) Identifying surfaces recognized by antibodies and required for neutralizing activity by H16.H5. To determine if the VLPs were correctly folded, they were tested in direct binding assays (ELISAs) using MAbs known to recognize the various hybrids. H16.V5 and H16.U4 are HPV16 MAbs that recognize epitopes known to depend on the native conformation of the HPV16 VLPs. H31.A4 is a specific HPV31 MAb that recognizes a conformation-dependent epitope on HPV31 VLPs. (B) H16.V5 was used to inhibit pseudovirus infection following incubation with VLPs. H16.V5 was titrated across a plate, and hybrid or wild-type VLPs were added. The following day, HPV16 pseudovirions were added to each well and incubated on ice for 1 h. Those samples were transferred to a 96-well tissue culture dish seeded with 293TT cells. After 3 days, 30 µl was removed from each well and tested for alkaline phosphatase activity.
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The 16:EF and 16:DE VLPs were relatively inefficient at adsorbing 16.V5 antibodies compared with wild-type 16 VLPs and 16:BC (Fig. 2B). This observation suggested either that the wild-type and 16:BC VLP preparations were more concentrated (
5 times) than the 16:EF and 16:DE preparations or that the neutralizing antibodies did not bind as well to the 16:DE or 16:EF VLPs. It is interesting that although 16:DE VLPs had a lower apparent concentration than 16:BC, 16:410, and 16:430 VLPs in the neutralization assay, 16:DE had a concentration similar to that of 16:BC and a higher concentration than 16:410 and 16:430 by ELISA (compare the curves in Fig. 2A with Fig. 2B). Thus, the neutralization assay might detect subtle differences in antibody-antigen interactions not measured by binding assays. These data suggest that amino acid changes on DE (and perhaps EF) could directly or indirectly reduce binding to the neutralizing epitope.
Identification of variable surface loops important for neutralization by human sera (titration of VLPs). To identify surface loops on VLPs important for neutralization activity by human sera, the sera were pretreated with VLPs as described above and tested for neutralization activity in a pseudovirus assay. In these experiments, the concentration of human sera was held constant (1:100) and the concentration of each of the VLPs was varied. Figure 3 shows the results from four sera. Serum "A" did not bind to HPV16 VLPs in an ELISA (data not shown) and, as expected, was not able to neutralize pseudovirus infection regardless of the VLPs used for pretreatment. At higher concentrations of VLPs, there was a gradual diminution of optical density values, suggesting that the VLPs might compete with pseudovirus for binding to the cells, but the effect was modest (Fig. 3A). Neutralizing antibodies in serum "B" were adsorbed by VLPs on which the FG and HI loops were type 16. Wild-type HPV16, 16:DE, 16:EF, 16:410, and 16:430 VLPs effectively adsorbed neutralizing antibodies from serum "B." The 16:FG and 16:HI hybrid VLPs partially adsorbed neutralizing antibodies, and the double hybrid VLPs 16:FG/HI failed to adsorb neutralizing antibodies. Compared with HPV31 wild-type VLPs, the 31:FG/HI hybrid VLPs acquired the ability to partially adsorb neutralizing antibodies. Thus, the neutralizing activity of serum "B" recognized an epitope consisting of residues on the FG and HI loops. For serum "C," the following VLPs did not have the ability to adsorb neutralizing antibodies: 31 wild type, 31:FG/HI, 16:DE, 16:FG, 16:HI, and 16:FG/HI. Neutralizing activity in this serum required HPV16 sequences on the DE, FG, and HI loops. Surprisingly, substitution of any one of those regions alone totally ablated the neutralization adsorption activity of the VLPs. Serum "D" required the same loops as "C"; however, the concentration of serum "D" was lower, and VLP titering failed to reach the end point (this was also true for serum "B"). The concentration of anti-HPV16 antibodies in serum "C" appeared to be higher because at a VLP dilution of 1:1,000, wild-type HPV16 could not adsorb neutralizing antibodies from serum "C" but the same concentration of wild-type VLPs effectively adsorbed neutralizing antibodies from sera "B" and "D" (Fig. 3).
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FIG. 3. Identification of VLP surface loops important for neutralizing activity in human sera by titration of VLPs. Wild-type and hybrid VLPs were titrated and incubated with one of four human sera overnight. These samples were then tested for residual activity in a pseudovirus neutralization assay. Lower optical density readings indicated that neutralization activity was not adsorbed by pretreatment with VLPs. Higher optical density readings indicated that neutralization activity was adsorbed or that there was no neutralizing activity in the serum. Serum A was known to be nonreactive with HPV16 VLPs (not shown). A control for each experiment was serum that was not pretreated with VLPs and that was used to neutralize pseudovirus infection (on the right side of each graph). The symbols represent the same VLP preparations as in Fig. 2.
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TABLE 1. Alkaline phosphatase activities of cells infected with pseudovirus following neutralization with serum pretreated with various concentrations of wild-type or hybrid VLPs
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FIG. 4. Identification of surface loops required for neutralizing activity in human sera by titration of sera. Human sera were titrated, mixed with wild-type or hybrid VLPs, and incubated overnight. These samples were then tested for residual activity in a pseudovirus neutralization assay. Lower optical density readings indicated that neutralization activity was not adsorbed by pretreatment with VLPs. Relatively high optical density readings indicated that neutralization activity was adsorbed or that there was no neutralizing activity in the serum. The bar graphs represent the optical density values from the graphs on the left that have been normalized for HPV16 wild-type activity. Only the three dilutions of VLPs that showed the greatest difference between HPV16 wild type and HPV31 wild type were used, except for serum J, where only the highest concentration of VLPs was used. The error bars are standard deviations for the three values.
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TABLE 2. Alkaline phosphatase activities of cells infected with pseudovirus following neutralization with various concentrations of serum pretreated with wild-type or hybrid VLPs
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One of the interesting findings from this study was that, for the great majority of sera tested, the ability of VLPs to adsorb HPV16-neutralizing antibodies was destroyed by substitution with a single loop from HPV31. It might have been anticipated that disruption of a single loop on VLPs would have decreased, but not ablated, the ability of particles to adsorb neutralizing activity. That pattern was observed in only 2 of 23 sera examined here (sera "L" and "S") and prevented identification of the specific loop(s) required for neutralizing activity. For the other 21 sera, adsorption of neutralizing activity was destroyed by substitution of a single region (loop) from HPV31 onto the HPV16 backbone. Thus, although sera recognized a variety of different combinations of loops, it appeared that for most sera, a single domain of the L1 surface, composed of multiple discontinuous regions, was recognized by neutralizing antibodies.
A second interesting finding was that, of the sequences required for neutralization defined here, none consisted of a single loop. In this analysis, for a serum to have all neutralizing residues on a single loop, one VLP hybrid (with a single loop substitution) would have had to reduce the normalized optical densities by greater than two-thirds, but no other VLP hybrid could reduce the values by more than one-third. Most sera appeared to require sequences on two loops or three loops, but two sera were identified that required sequences on four loops (sera "T" and "V"). This finding is in contrast to binding studies that have identified epitopes consisting of one or two loops (8, 14, 15, 17). It is possible (as with all experiments of this type) that amino acid sequence changes on one loop altered the conformations of adjacent loops. Although the five loops do not contact a single site, each loop is in close proximity to at least one other loop (7). Induced conformation changes on adjacent loops could reduce neutralization adsorption activity. Changes in antibody binding might have been detected in these assays but not in ELISAs, because the ELISA might detect only antibodies with higher avidity (19). Thus, our estimation of the number of loops involved might overestimate the number of loops that were in direct contact with neutralizing antibodies. This problem is being addressed by using L1 protein with single-amino-acid substitutions in the regions of interest.
Vaccination with L1 VLPs induces high-titer neutralizing serum (2, 12, 23); however, because there are approximately 30 genital HPV types, making a vaccine specific for each type is impractical. This has led to an interest in creating polyvalent VLPs that could induce immunity to multiple types. Chimeric L1 VLPs have been produced that induce neutralizing sera specific for two types (8). The findings presented here, indicating that most neutralizing sera required sequences on two or more loops (and given the fact that the number of antigenic sites is limited to five loops [7]), implies that creating chimeric L1 VLPs that can induce immunity for more than two types will be difficult, if not impossible.
Finally, there was not a single neutralizing epitope that all of the sera recognized. The regions most frequently identified as influencing a neutralizing activity were the DE loop (82.6% of sera) (combined data from Tables 1 and 2), the FG loop (71.3% of sera), and the EF loop (43.5% of sera). The VLPs with two regions replaced with HPV31 sequence (16:FG/HI) were identified as being important for neutralization for 91.3% of sera tested. Comparison of results using FG/HI with results using FG VLPs suggests that the HI region was important for recognition by a minimum of 20.0% of sera. Unfortunately, this question could not be addressed directly because of technical difficulties in producing native 16:HI VLPs. Pretreatment of sera with 16:FG/HI VLPs more often showed a partial loss of the ability to adsorb neutralizing antibodies (14 of 23 sera; 60.9%) rather than a reduction to less than one-third of wild-type VLPs (7 of 23 sera; 30.4%). In comparison, pretreatment of sera with 16:DE VLPs more often showed a greater disruption in the ability to adsorb neutralization antibodies (to <1/3 of wild type; 14 of 23 sera; 60.9%) than a partial disruption (5 of 23 sera; 21.7%). This again indicated that the region most important for neutralizing human sera included the DE loop. The other regions (the BC loop and the variable regions between residues 410 and 430) were infrequently involved in neutralizing epitopes.
A previous report described the FG and HI loops as the immunodominant epitopes on HPV16 (8) because they were the regions most frequently detected by mouse monoclonal antibodies. However, another study found that binding by most HPV16-reactive human sera was not transferred to HPV11 VLPs with HPV16 FG and HI loop substitutions (26). In the latter study, a comparison of HPV16 immune human serum binding was also made between wild-type HPV16 VLPs and HPV11/16 hybrid VLPs in which the first 171 residues (which encode loops BC and DE) were from HPV11, with the remainder of the molecule being HPV16 sequences. Again, many HPV16-reactive sera bound to wild-type but not to hybrid VLPs, suggesting that perhaps the BC or DE loops were important for HPV16 binding by human sera. Thus, our results and those of Wang et al. (26) indicate that the FG and HI loops alone do not define the HPV16 immunodominant epitope and implicate DE as often being involved in human serum binding.
The assay used here to detect sequences important for neutralizing activity found subtle differences between antibody binding and neutralization activity. For instance, 31:FG/HI VLPs did not adsorb neutralizing H16.V5 but were recognized by this MAb in ELISA (Fig. 2). These differences may be due to the fact that one assay takes place in solution while the other is done on a solid surface. It is also possible that the neutralization assay was more sensitive to antibody-VLP avidity than the ELISA.
In summary, the use of hybrid VLPs to adsorb HPV16-specific antibodies from human sera permitted the identification of surface loops required for neutralizing activity. Two or more variable regions on the VLP surface were required for neutralization activity for all sera tested. There was not a single dominant epitope, but sequences on DE and FG loops were required for neutralizing activity for all but two of the sera tested.
We express our appreciation to John Schiller and Diane Pastrana for providing the reagents and instruction necessary for conducting pseudoviral neutralization assays and to the study participants who made this work possible.
Supplemental material for this article may be found at http://jvi.asm.org. ![]()
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