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Journal of Virology, December 2005, p. 15314-15322, Vol. 79, No. 24
0022-538X/05/$08.00+0 doi:10.1128/JVI.79.24.15314-15322.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
M. H. Verheije,1,2,
K. Broen,1
B. J. Bosch,1
B. J. Haijema,1
C. A. M. de Haan,1
V. W. van Beusechem,2
W. R. Gerritsen,2 and
P. J. M. Rottier1*
Virology Division, Department of Infectious Diseases & Immunology, Utrecht University, 3584 CL Utrecht,1 Division of Gene Therapy, Department of Medical Oncology, VU University Medical Center, 1081 HV Amsterdam, The Netherlands2
Received 5 August 2005/ Accepted 27 September 2005
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MHV belongs to the family Coronaviridae, a family of large (approximately 30-kb), positive-strand RNA viruses. MHV displays high species specificity, determined by the interaction between the virus spike (S) protein and the virus receptor (3). The S protein is a type I glycoprotein, synthesized as a 180-kDa glycosylated precursor that is posttranslationally cleaved into two 90-kDa subunits, S1 and S2 (13). The spike N-terminal S1 subunit is responsible for binding to the MHV receptor, which results in a conformational change of the S2 subunit, mediating the fusion of the virus envelope and the cell membrane. Key events in this fusion process are the insertion of an as-yet-unidentified fusion peptide present in the S protein into the cell membrane and the coalescence of the heptad repeat regions, HR1 and HR2, into a tightly associated six-helix bundle (2, 31).
MHV infects murine cells via receptors belonging to the carcinoembryonic antigen family of glycoproteins in the immunoglobulin (Ig) superfamily, called murine CEACAMs (1, 7, 8, 38). Results from infection studies with mice have shown that mCEACAM1a is the major receptor for MHV strain A59 (18). Through analysis of recombinant forms of CEACAM1a, it was established that the N-terminal domain is responsible for virus binding (9, 36). Crystallization studies revealed that this domain resembles an Ig-like fold and identified the amino acids responsible for interaction with the S protein (33). Furthermore, it was reported that incubation of virions with anchorless soluble receptor proteins caused a marked increase in the hydrophobicity of the virions, which was associated with a conformational change in S2 and neutralization of infection of murine cells (24, 34, 40).
The aim of our studies is to investigate the possibilities of using animal coronaviruses as oncolytic vectors for human use. This requires specific targeting of the viruses to antigens (over) expressed on tumor cells. Our approach is to engineer bifunctional adapters of which, when functioning, the sequence will be incorporated genomically into the virus to create a self-targeted vector. In a previous study, we showed that the feline infectious peritonitis coronavirus (FIPV) could be redirected to human cancer cells expressing the epidermal growth factor receptor (EGFR) via a bispecific single-chain antibody capable of binding simultaneously to the FIPV spike protein and to the human EGFR. The same adapter was also able to target fMHV, an MHV derivative carrying the FIPV spike protein, to the EGFR (39). Unfortunately, subsequent attempts to genomically incorporate the adapter sequence failed; the virus appeared to be unstable and rapidly lost the inserted sequence (unpublished observations). In the present study, we therefore took a fundamentally different approach by designing an adapter of a different nature. We hypothesized that the N-terminal domain of CEACAM1a (soR), when fused to a cancer cell-binding ligand, could also be used as a bridging adapter. To demonstrate this principle, the soR part was fused to single-chain monoclonal antibody (MAb) 425 directed against the EGFR and analyzed for its capacity to mediate EGFR-specific entry of MHV into human cancer cells. The results show that although the binding of the soR moiety to the S protein presumably triggers in the viral spike the conformational changes that normally initiate the membrane fusion process, these events do not inactivate the particles but allow the fusion process to ensue as soon as the virus-adapter complex has docked with the cell receptor.
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Construction of soR adapters.
To obtain the gene encoding the N-terminal domain of the mCEACAM1a receptor (henceforth referred to as soR), a PCR was performed on plasmid pCEP4:sMHVR-Ig (kindly provided by T. Gallagher (15) with forward primer 2296 (5'-CATGGGCCCAGCCGGCCGAGCTGGCCTCAGCACAT-3') and reverse primer 2297 (5'-CATGGCGGCCGCGGGGTGTACATGAAATCG-3'). In addition, PCRs were performed on the same plasmid with primers 2296 and 2298 (5'-TGTCACAAGATTTGGGCTGGGGTGTACATGAAATCG-3'), 2296 and 2299 (5'-CGGTGGGCATGTGTGAGTTTTGTCACAAGATTTG-3'), and 2296 and 2300 (5'-CATGGCGGCCGCTGGGCACGGTGGGCATGTGT-3') to generate a similar soR fragment with a 3' extension encoding a hinge linker region derived from human IgG1 (15). The resulting DNA fragments, soR (429 nucleotides) and soR-h (472 nucleotides), contained a 5' SfiI site and a 3' NotI site (underlined in the primers) and were subsequently cloned with these restriction enzymes into the expression vector pSecTag2 (Invitrogen, Breda, The Netherlands). The resulting expression vectors, pSTsoR and pSTsoR-h, encode the N domain of mCEACAM1a in fusion with an amino-terminal Ig
signal sequence and a carboxy-terminal myc-His tag under the control of a cytomegalovirus and a T7 promoter. The hinge region in pSTsoR-h is located directly downstream of the N domain of mCEACAM1a. Single-chain MAb 425, directed against EGFR, was isolated from pSTCFS11-425 (17, 26) by NotI digestion and ligated in a VH-VL configuration into the NotI site downstream of the soR and soR-h sequences in pSTsoR and pSTsoR-h, creating a three-Ala linker between the soR and single-chain fragments, resulting in expression vectors pSTsoR-425 and pSTsoR-h-425. The composition of the adapter genes was confirmed by sequencing.
Production and analysis of soR constructs. For production of the soR adapter proteins, subconfluent monolayers of OST7-1 cells were inoculated at a multiplicity of infection (MOI) of 5 with vTF7-3 (t = 0 h) and transfected (t = 1 h) with pST-soR, pST-soR-h, pST-soR-425, or pST-soR-h-425 or mock transfected by using Lipofectin (Life Technologies, Ltd., Paisley, United Kingdom). The medium was refreshed at t = 4.5 h, harvested at t = 20 h, and centrifuged for 10 min at 3,000 rpm to clear it of cell debris. The supernatants containing the soR proteins were loaded onto a 20% sucrose cushion and centrifuged for 30 min at 13,000 rpm to clear them of vTF7-3 virus prior to 20-fold concentration with Vivaspin columns. The protein batches were aliquoted and stored at 20°C.
Western blot assay. The concentrated soR adapter protein preparations were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and subsequent blotting on a polyvinylidene difluoride membrane (Bio-Rad Laboratories, Hercules, CA). To block nonspecific antibody binding, the blot was incubated in blocking buffer (phosphate-buffered saline [PBS] containing 5% Protivar and 0.05% Tween 20) for 30 min at room temperature. Incubation was continued with anti-N-CEACAM-Fc antibodies diluted 1:3,000 in blocking buffer for 1 h at room temperature, followed by swine anti-rabbit peroxidase (DAKO, Glostrup, Denmark) diluted 1:3,000 in blocking buffer for 1 h at room temperature. Finally the blot was incubated with a 1:1 mixture of luminol and enhancer (Amersham Pharmacia Biotech Europe GmbH, Freiburg, Germany) and analyzed with Hyperfilms (Amersham Pharmacia Biotech Europe GmbH) according to the manufacturer's protocol.
Anti-N-CEACAM-Fc dot blot assay. The concentration of the soR proteins in our concentrated preparations was determined by dot blot analysis. Serial dilutions in a total volume of 50 µl were blotted onto a nitrocellulose membrane with a vacuum pump. A standard curve of purified N-CEACAM-Fc protein (100 nM) was prepared in parallel to estimate the concentration of the soR adapter proteins in our preparations. The immunoassay with antibodies directed against N-CEACAM-Fc was performed as described above for the Western blot assay. The density per square millimeter of each dot was measured with a densitometer (Bio-Rad Laboratories) and plotted against the corresponding dilution factor, after which the soR protein concentrations were calculated. The different preparations were brought to the same concentration with culture medium before use.
Determination of luciferase expression. At the indicated time points, the culture media were removed and the cells were lysed with the appropriate buffer provided with the firefly assay system (Promega). Intracellular luciferase expression was measured according to the manufacturer's instructions, and the relative light units were determined with a LUMAC biocounter M2500.
Anti-MHV immunostaining. Cells inoculated with MHV or fMHV in the presence or absence of adapter protein were fixed with PBS containing 3.7% paraformaldehyde, permeabilized with PBS containing 1% Triton X-100, and subsequently incubated with k134 anti-MHV serum diluted 1:300, followed by swine anti-rabbit peroxidase (DAKO, Glostrup, Denmark) diluted 1:300, both in PBS containing 5% fetal bovine serum. The cells were stained with AEC (Brunschwig, Amsterdam, The Netherlands) according to the manufacturer's protocol and analyzed by light microscopy.
Antibody blocking experiments. To determine whether soR-425 and soR-h-425 interact with the EGFR, 105 A431 cells per 0.32-cm2 well were incubated with or without 100 µl hybridoma supernatant containing MAb 425 for 30 min at 4°C. Next, the cells were inoculated with 104 tissue culture infective doses (TCID50) of MHV-EFLM preincubated for 1 h at 4°C with 0.5 nM soR-425 or soR-h-425 and were incubated for 1 h at 37°C. The cells were washed, and incubation was continued for 20 h, after which they were lysed and luciferase expression was measured.
Analysis of the effect of mHR2 on coronavirus infection. The effect of fusion-inhibitory peptide mHR2 on the targeted infection process was analyzed by preparing in parallel three sets of inoculation mixtures. MHV-EFLM at 104 TCID50 was preincubated in duplicate with 5 nM soR-425, soR-h-425, or mock supernatant for 1 h at 4°C. To one of each set of mixtures, mHR2 peptide was added to a concentration of 20 µM. Cultures of 105 human A431 cells were washed with PBS and inoculated with the infection mixtures for 1 h at 37°C. The cells were then washed and incubation continued for 20 h. Finally, the cells were lysed and luciferase activity was measured.
Monitoring of productive infection. A431 cells were seeded at 5 x 105/10-cm2 well and inoculated the next day with 2.5 x 106 TCID50 MHV-EFLM in the presence or absence of adapter protein for 1 h. The cells were washed three times with PBS and cultured for up to 48 h. At several time points after inoculation, a small sample of the medium was harvested, centrifuged for 10 min at 3,000 rpm, and stored at 80°C until analysis. The amount of virus produced at each time point after inoculation was determined by endpoint dilution on murine LR7 cells.
Measurement of soR-425-mediated cell-cell fusion. A431 cells at 5 x 104/0.32-cm2 well were inoculated for 2 h with 5 x 104 TCID50 MHV-EFLM preincubated with 5 nM soR-425 for 1 h at 4°C. The cells were washed three times with PBS and incubated further in the presence or absence of 5 nM soR-425, soR-h-425, or mock control supernatant. Immunostaining was performed at 24 h after inoculation, and the number of nuclei per syncytium was determined by counting under a light microscope.
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FIG. 1. Schematic diagram of the soR constructs used in this study. Native mCEACAM1a[1,4] is composed of two ectodomains (N and A2) and contains a signal sequence (SS). The N and A2 domains are linked to the transmembrane (TM) and cytoplasmic (Cy) domains. The soluble receptor constructs are depicted below mCEACAM1a[1,4], i.e., the CEACAM1a N domain (soR), the Ig hinge region (h), and single-chain MAb 425 (425). The different soR proteins contain an Ig leader sequence for secretion and a myc-His tag for detection.
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FIG. 2. Immunoblot analysis of the soR adapter proteins. (A) Western blot analysis of the soR adapter proteins in the presence (left side) and absence (right side) of ß-mercaptoethanol. kD, kilodaltons. (B) Anti-N-CEACAM-Fc dot blot analysis was used to equalize the soR protein concentrations in the different batches. Twofold dilutions were made and analyzed for reactivity with anti-N-CEACAM-Fc antibody. In addition, the adapter concentration in the soR preparation was determined by an anti-N-CEACAM-Fc dot blot assay in which a standard curve of purified N-CEACAM-Fc protein (100 nM) was used to estimate the concentration of the soR adapter batches, as shown here for soR-425.
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FIG. 3. Virus neutralization by the soR adapter proteins. MHV-EFLM (MOI, 0.1) was preincubated for 1 h at 4°C with various concentrations of the different soR adapter proteins and inoculated onto 105 murine LR7 cells, which were then incubated for 1 h. The cells were washed, incubation was continued, and after 7 h luciferase expression was measured. Shown is the percent neutralization, calculated as the decrease in luciferase expression relative to infections in the absence of adapter protein. The data represent the average of a representative experiment performed in triplicate. Error bars indicate standard deviations.
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FIG. 4. Targeting of MHV-EFLM to human A431 cells. (A) To determine whether MHV-EFLM was able to infect human A431 cells, 104 TCID50 of MHV-EFLM were preincubated in the presence or absence of 0.5 nM soR-425. After inoculation onto 105 A431 cells for 1 h at 4°C, the cells were washed and incubated further. At several time points after inoculation, intracellular luciferase expression was measured. Shown are the data from a representative experiment. (B) MHV-EFLM (104 TCID50) was preincubated with the different soR adapter proteins at various concentrations and inoculated onto A431 cells, which were incubated for 1 h. At 20 h after inoculation, luciferase expression was determined. All data shown represent the average and standard deviation of an experiment performed in triplicate. RLU, relative light units; p.i., postinoculation.
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Soluble receptor-mediated MHV neutralization, but not targeting, is affected by soR dimer formation. To further investigate the effect of the hinge region in the soR proteins on MHV neutralization and targeting, we disrupted the soR-h and soR-h-425 dimers by treatment with the minimal concentration of dithiothreitol (DTT) required for complete reduction of the hinge disulfide bonds. Thus, all soR proteins were treated with 1.56 µM DTT for 20 min at 4°C. Dimer dissociation was confirmed by Western blot analysis performed under nonreducing conditions (Fig. 5A). Incubation of soR-h and soR-h-425 in the presence of DTT resulted in full reduction to monomers, whereas in the absence of DTT, protein bands corresponding to the size of dimers were detected. No effects of the DTT treatment on soR and soR-425 migration were observed.
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FIG. 5. Soluble receptor-mediated MHV neutralization, but not targeting, is affected by soR dimer formation. (A) Western blot analysis of the soR adapter proteins electrophoresed under nonreducing conditions after preincubation in the presence (+) or absence () of DTT. kD, kilodaltons. (B) MHV-EFLM (MOI, 0.1) was inoculated onto murine LR7 cells, which were incubated for 1 h in the presence or absence of various amounts of the different soR adapter proteins, which had been pretreated in the presence (+) or absence () of DTT. At 7 h after inoculation, luciferase expression was determined. Shown is the percentage of neutralization, calculated as the decrease in luciferase expression relative to infections in the absence of adapter proteins. The data represent the average of a representative experiment performed in triplicate. Error bars indicate standard deviations. (C) MHV-EFLM (104 TCID50) was inoculated onto 105 A431 cells in the presence of 5 nM soR-425 or soR-h-425 protein, both pretreated in the presence (+) or in the absence () of 1.56 µM DTT. After 1 h, the cells were washed and incubation was continued for 20 h, after which the cells were lysed and luciferase expression measured. All data shown represent the average and standard deviation of an experiment performed in triplicate. RLU, relative light units.
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Soluble receptor-mediated coronavirus infection is EGFR and S protein specific. To further confirm that the infection of MHV-EFLM established by soR-425 or soR-h-425 was indeed mediated by the EGFR expressed on A431 cells, we studied the effect of anti-EGFR MAb 425. A431 cells were incubated with the antibody prior to inoculation with MHV-EFLM in the presence of 0.5 nM soR-425 or soR-h-425 for 1 h. The cells were then washed and incubation continued for 20 h. Figure 6A shows that infection was blocked almost completely by MAb 425, confirming that a direct interaction with the EGFR is required for adapter-mediated infection.
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FIG. 6. EGFR- and spike-specific coronavirus targeting. (A) MHV-EFLM was preincubated with soR-425 or soR-h-425 and inoculated onto A431 cells preincubated for 1 h at 4°C in the presence or absence of anti-EGFR MAb 425. The data represent average luciferase expression relative to that of cells inoculated in the absence of blocking antibody. Error bars show the standard deviations of experiments performed in triplicate. (B) The specificity of the interaction of the soR adapters with the MHV spike was determined by preincubating 104 TCID50 of MHV or fMHV in the presence or absence of the soR adapters at 0.5 nM. After 1 h, the inoculum was replaced with normal culture medium and incubation was continued for 20 h. Polyclonal MHV antibodies were used to detect the presence of coronavirus proteins in the A431 cells at 20 h after inoculation. Representative images are shown.
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Targeted coronavirus infections require S protein-mediated membrane fusion. Addition of a heptad repeat-mimicking peptide, mHR2, during inoculation of murine LR7 cells abrogates MHV infection by inhibition of the coalescence of the heptad repeat regions, HR1 and HR2, required for fusion (2). In order to investigate whether the targeted MHV infections also depend on those conformational rearrangements in the viral spike protein, we tested their sensitivity to the mHR2 peptide. To this end, MHV-EFLM was targeted toward EGFR expressed on A431 cells with 5 nM adapter proteins soR-425 and soR-h-425, in the presence or absence of 20 µM mHR2. As shown in Fig. 7, addition of the peptide efficiently blocked both soR-425- and soR-h-425-mediated infections. Thus, EGFR-mediated MHV infections appear to depend on conformational changes in the S protein, similar to the ones occurring during normal infection.
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FIG. 7. Effect of mHR2 on the bispecific adapter-mediated entry process. A431 cells were inoculated with a preincubated mixture of MHV-EFLM (104 TCID50) and 5 nM soR-425 or soR-h-425 in the presence or absence of 20 µM mHR2. After 1 h, the cells were washed and incubation continued for 20 h. Finally, the cells were lysed and luciferase activity was measured. Error bars show the standard deviations of experiments performed in triplicate. RLU, relative light units.
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FIG. 8. Soluble receptor-mediated syncytium formation and production of progeny virus after targeted infection. (A) A431 cells were inoculated with MHV-EFLM in soR-425-containing medium for 2 h and subsequently cultured for another 22 h in the presence or absence of soR-425 or soR. The cells were fixed and stained for the presence of coronavirus proteins with polyclonal MHV antibodies. The number of nuclei of eight randomly selected syncytia per inoculated, stained cell culture was determined under a light microscope, and this was carried out in parallel in triplicate. The data represent the average number of nuclei per syncytium, based in each case on the counting of 24 syncytia. Error bars show the standard deviation of such an experiment. (B) MHV-EFLM was preincubated in the presence or absence of soR-425 or soR-h-425 and inoculated onto A431 cells. After 1 h, the cells were washed and incubation was continued. At several time points thereafter, samples were taken from the cell culture medium and subsequently titrated on murine LR7 cells to determine the amount of virus produced. The results shown are from a representative experiment. p.i., postinoculation.
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We have shown recently that targeted entry of the feline coronavirus FIPV and chimeric fMHV could also be accomplished by making use of an adapter composed of two single-chain antibodies, one directed against the feline viral spike and the other to the EGFR (39). Like the soR-425-mediated MHV infections, the bispecific antibody-mediated fMHV infections were blocked by an HR-mimicking peptide derived in this case from the feline S protein (39). These observations suggest that binding of the adapters to particular regions of the S proteini.e., the receptor-binding domain or a certain epitoperesults in conformational changes that, upon binding of the virus-adapter complex to a cellular target receptor, facilitate insertion of the fusion peptide into the cell membrane. Binding of these adapters apparently does not inactivate the virus, as is also indicated by studies in which MHV, purified by sedimentation through a sucrose cushion after preincubation of the virus with the soR-425 adapter protein, maintained its infectivity for EGFR-positive cells (our unpublished data). These results suggest that the adapter proteins, once bound to the virus, may freeze the S protein in a stable prefusion conformation ready to proceed to its structural rearrangements upon contacting the target cell. What the actual trigger is that activates the fusion process is unknown, but it is quite likely that the insertion of the fusion peptide into the cellular membrane is a critical event.
An interesting paradox that we noticed in our studies was the opposite efficiency of hinge-containing and hingeless adapter molecules in neutralization and targeting. Thus, the virus-neutralizing capacities of the adapters soR-h and soR-h-425 were significantly higher than those of the soR and soR-425 molecules, respectively, while the reverse was true of the relative targeting efficiencies of soR-h-425 and soR-425 (Fig. 3 to 5). The reasons for these differences appear to be unrelated. This can be concluded from the differential effects of reducing agent treatment of the adapters on the two activities. Whereas this treatment did not affect the targeting efficiencies of the adapters, it reduced the virus-neutralizing capacities of the hinge-containing adapters to about the level of their hingeless counterparts, the activity of which was not significantly changed by the treatment. Dimeric forms of the adapters apparently neutralize the infectivity of the virus more efficiently than monomers, possibly by their stronger interaction with the spikes or their ability to cross-link spikes on the viral particle. Remarkable as it may seem, these effects apparently have no bearing on the efficiency of the targeting of such viral particles or on the subsequent steps leading to membrane fusion.
Previous studies have shown that the N domain of the mCEACAM1a receptor is sufficient by itself to induce conformational changes in the MHV spike protein (22, 24, 34, 40). Remarkably, however, this same N domain, when linked directly to the transmembrane domain, thus lacking the intermediate CEACAM1a A2 domain (Fig. 1), failed to function as a receptor for MHV (9). A possible explanation for this observation might be that the functional structure of the N domain is affected by linking it to the transmembrane region. This appeared, however, not to be the case when the N domain was replacing the corresponding domain in the mouse poliovirus receptor homolog (25), which also belongs to the family of Ig-like viral receptors (23). The resulting chimeric receptor molecule functioned as a receptor for MHV (6). It is conceivable that the CEACAM1a N domain needs a certain distance from the cellular membrane to allow interaction with the S protein to lead to effective membrane fusion. Interestingly, the efficiency of the targeted infections described here was significantly higher with the soR-425 adapter than with the soR-h-425 adapter, and this difference was not accounted for by the dimeric state of a fraction of the latter, as the targeting efficiency of the hinge-containing adapter was unaffected by dissociation through DTT treatment. These observations indeed suggest that also the dimensions of our adapters may affect the efficiency of their targeting. Whether this is really the case, and how, remains to be investigated.
The ability to target viruses by design to preselected cells is a tremendous challenge with far-reaching implications for the development of virus-based therapies. We previously established the principle of retargeting of coronaviruses by exchanging spike ectodomains (16, 21). Subsequent attempts to modify the tropism of these viruses further by incorporating tumor-binding ligands into different parts of the spike protein were unsuccessful, as no viable viruses could be rescued (M. H. Verheije, T. Würdinger, and P. J. M. Rottier, unpublished data). As an alternative and potentially also versatile targeting approach, we therefore aimed at the development of bispecific adapters. The use of soluble receptor-based adapters to expand virus tropism has been described before for retroviruses (32) and adenoviruses (20). Recently, also the herpes simplex virus was redirected to a new receptor via the variable domain of its cellular receptor, nectin 1, fused to a single-chain antibody (27). However, in contrast to these viruses, the coronavirus MHV is normally incapable of infecting human cells, due to its restricted tropism. Hence, its native tropism does not need to be eliminated to obtain a truly targeted virus, which avoids possible reduction of its cytotoxicity to the specific target cells. In order to fully exploit the oncolytic properties of MHV, multiround genetic targeting will be essential. As we described earlier, incorporation of the gene encoding the bispecific single-chain antibody s11-425 into the adenovirus genome leads to persistent self-targeting of the virus to a specific receptor (35). Also others showed virus retargeting by genomically expressed bispecific adapters, though this resulted in a reduction of the oncolytic potency of the adenovirus in the case of the sCAR-EGF adapter (19). The same approach seems also feasible for the development of tumor-targeted coronaviruses. As we and others showed recently, MHV can tolerate and express foreign genes from various insertion sites of its genome (4, 5, 11, 12). Therefore, our next step in the development of oncolytic coronaviruses will be to introduce the gene encoding a bispecific adapter molecule into the virus genome.
This work was supported by the Dutch Cancer Society (UU 2001-2430). Victor W. van Beusechem is supported by a research fellowship from the Royal Netherlands Academy of Arts and Sciences (KNAW).
T.W. and M.H.V. contributed equally to this work. ![]()
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