Previous Article | Next Article ![]()
Journal of Virology, December 2005, p. 14719-14729, Vol. 79, No. 23
0022-538X/05/$08.00+0 doi:10.1128/JVI.79.23.14719-14729.2005
Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892
Received 24 April 2005/ Accepted 7 September 2005
|
|
|---|
|
|
|---|
|
|
|---|
Antibodies. Rabbit antisera were raised against a peptide derived from the predicted L3 sequence (amino acids 45 to 59, KPRLQPNQPPKQDNK) and one peptide from the A3 sequence (P4b/4b; amino acids 632 to 643, QYISARHITELF) plus a C-terminal cysteine required for coupling to keyhole limpet hemocyanin (Covance Research Products). Anti-A14-C (5), anti-A17-N (5), anti-A6/Rpo19 (2), and anti-H4/Rap94 (1) rabbit antisera, as well as anti-B5 rat monoclonal antibody 19C2 (25) were described previously. S. Shuman (Sloan-Kettering Institute, New York, N.Y.) kindly provided anti-H6/topoisomerase and anti-J6/Rpo147 rabbit antisera. Polyclonal anti-A4 antiserum (11) was provided by M. Esteban (Centro Nacional de Biotecnologia, Madrid, Spain) and murine monoclonal anti-L1 antibody 7D11 (15) was provided by A. Schmaljohn (United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD).
Plasmid and recombinant VACV construction. To construct pVOTE-L3L, the L3L ORF was amplified by PCR from genomic DNA using oligonucleotide primers 5'-ATA AAT TCC ATA TGA ATA CCC GTA CCG ATG TTA C-3' (NdeI site underlined) and 5'-TTA AAT AAT TTT AAT TCG TTT AAC GAA TAT CTT G-3', and the PCR product was cloned into the NdeI-SmaI sites of pVOTE.2 downstream of an encephalomyocarditis virus leader sequence (32). This plasmid was used to introduce the inducible copy of L3L into the A56R (hemagglutinin) locus of vT7lacOI by homologous recombination using mycophenolic acid selection as described previously (32), resulting in the intermediate virus vL3L/L3Li. The inducible L3L copy was verified by PCR amplification and sequence analysis. The endogenous L3L ORF was replaced with the enhanced green fluorescent protein (GFP) marker gene using homologous recombination with a linear DNA fragment containing the GFP sequence flanked by partial sequences of the L2R and L4R ORFs. This construct preserved the first 36 nucleotides of the L3L ORF, which function as a promoter for L4R but eliminated the start codon of L3L as well as a second methionine codon. This fragment was generated in three steps. First, two independent PCRs were carried out to amplify the flanking regions. The upstream flanking region (containing part of L2R) was amplified with oligonucleotide primers 5'-TTA TAA TAT TGG CAG CGT TGT TTA TGT ACT A-3' and 5'-GTC TAc TgC agT cAc Aaa ATA AAG TAA TAA AAA AT-3' (PstI site underlined; lowercase nucleotides indicate mutations introduced to create the PstI site and remove identical nucleotides between the L2R-L3R overlap and the inducible L3R). The downstream flanking region (containing part of the L4R sequence) was amplified using oligonucleotide primers 5'-TTT GTC TAg ATT ATC GTT TGT AAa ATC GGT ACG GGT ATT aAT T-3' (XbaI site underlined; lowercase letters indicated mutations introduced to create the XbaI site and remove possible start codons from the L3L fragment not deleted to preserve the L4R promoter) and 5'-GTA TAC TCA GTC GAC GCG GAT TCC ATA TTT TCT TTA TA-3'. In the second step, the PCR-amplified fragments were digested with the indicated restriction enzymes, mixed with a fragment containing the GFP ORF and the F18L late promoter obtained by digesting plasmid p11GFP (unpublished data) with XbaI and PstI, and ligated together. The third step consisted of PCR amplification with the outmost primers using the ligation reaction product as the template. The final PCR product was transfected into cells infected with vL3L/L3Li at 0.5 PFU per cell using Lipofectamine 2000 (Invitrogen). Recombinant viruses expressing GFP were isolated by five rounds of plaque purification using an inverted fluorescence microscope. The correct site of recombination was verified by PCR analysis and sequencing.
Electron microscopy. For transmission electron microscopy, BS-C-1 cells were grown in 60-mm-diameter dishes and infected with 3 PFU of vL3Li per cell in the presence or absence of 25 µM IPTG. At 20 h after infection, cells were fixed and prepared for transmission electron microscopy as described previously (9). Purified IMVs were adsorbed to carbon-coated Formvar grids and negatively stained with 7% uranyl acetate in 50% ethanol.
Confocal microscopy. BHK cells were infected with 2 PFU of vL3Li per cell in the presence or absence of 25 µM IPTG. At 24 h after infection, cells were fixed with 4% paraformaldehyde for 10 min, blocked for 30 min with 3% bovine serum albumin, washed three times with phosphate-buffered saline, and incubated with rat anti-B5 followed by Cy5-coupled anti-rat antibody (Jackson Immunoresearch). After three more washes, cells were permeabilized with 0.2% Triton X-100 in phosphate-buffered saline, and actin and DNA were visualized with phalloidin coupled to Alexa Fluor 568 (Molecular Probes) and diamidino-2-phenylindole (Molecular Probes), respectively. HeLa cells used for the IMV entry assay were stained as described previously (28). Images were collected with a Leica TCS-NT/SP2 inverted confocal microscope system.
Southern slot blot analysis. Serial dilutions of equal numbers of L3-containing (L3+) and L3-deficient (L3) particles were adjusted to 0.4 M NaOH and 10 mM EDTA in a final volume of 100 µl and heated to 100°C for 10 min to disrupt virions and denature the packaged DNA. Heated samples were filtered through a positively charged nylon membrane in a slot blot apparatus (Schleicher & Schuell). Wells were rinsed once with 0.4 M NaOH before the membrane was neutralized with 2x SSC (1x SSC is 0.15 M NaCl [pH 7] plus 0.015 M sodium citrate), and the DNA was covalently cross-linked to the membrane by UV irradiation. Membranes were incubated in hybridization buffer (0.09 M sodium citrate, pH 7, 0.9 M NaCl, 0.1% Ficoll, 0.1% polyvinylpyrrolidone, 0.1% bovine serum albumin, 0.5% sodium dodecyl sulfate [SDS]) for 1 h at 68°C. A heat-denatured E9L DNA fragment labeled with 32P using random priming (Decaprime II; Ambion) was added directly to the prehybridization reaction mixture to a final concentration of 1 x 106 cpm/ml, and incubation was continued for 15 h. Membranes were washed with increasing stringency, and hybridized, radioactively labeled DNA was detected by autoradiography and quantified by storage phosphor autoradiography with a Typhoon 8600 (Molecular Dynamics).
Northern blot analysis. Total RNA was prepared from infected cells with the RNeasy mini kit (QIAGEN). Equal amounts of total RNA were denatured by glyoxylation and separated on 1% agarose gels. Equal loading was confirmed by analysis of ethidium bromide-stained rRNA bands. RNA was transferred to a positively charged nylon membrane by downward capillary transfer in 20 mM NaOH. Detection and quantitation were carried out as described above for "Southern slot blot analysis."
Transcription by VACV cores.
Purified virions were incubated in a final volume of 20 µl containing 50 mM Tris HCl (pH 8.0), 5 mM dithiothreitol (DTT), 10 mM MgCl2, 0.05% Nonidet P-40 (NP-40), 5 mM ATP, 1 mM GTP, 1 mM CTP, 0.02 mM UTP, and 1 µCi of [
-32P]UTP (3,000 Ci/mmol) for 1 h at 30°C. Incorporation of 32P into trichloroacetic acid-insoluble material was determined by scintillation counting. Kinetic experiments were carried out under the same conditions using 0.25 OD260 unit of virions per reaction. At the indicated time, a 30-µl aliquot was withdrawn and cooled and EDTA was added to a final concentration of 30 mM. Cores were collected by centrifugation at 20,000 x g for 20 min in the cold. Methylation of RNA caps was measured by incorporation of 3H from [3H]methyl-S-adenosylmethionine in the presence of 1 mM UTP.
Preparation and analysis of virion extracts.
Virion extracts were prepared as described previously (24) from 10 OD260 units of virions. Transcription reaction mixtures contained 50 ng of pSB24 (20) plasmid DNA linearized with SmaI, 15 mM Tris, pH 8.0, 2 mM DTT, 2 mM ATP, 1 mM CTP, 20 µM UTP, 100 µM 3'-O-methyl GTP, 5 µCi [
-32P]UTP, 5 mM MgCl2, and 0.5 µl virion extract or DEAE column fraction in a total volume of 10 µl. Reaction mixtures were incubated at 30°C for 1 h before the amount of [
-32P]UMP incorporated into trichloroacetic acid-insoluble material was determined by scintillation counting. The pSB24 plasmid was generated by Steven Broyles (Purdue University) and contains a synthetic early promoter upstream of a 382-nucleotide G-less cassette. RNA products were isolated from larger reaction mixture volumes using the pooled peak fractions by phenol-chloroform extraction and isopropanol precipitation.
|
|
|---|
![]() View larger version (87K): [in a new window] |
FIG. 1. Multiple-sequence alignment of L3 orthologs. The nonredundant protein sequence database (National Center for Biotechnology Information) was searched using the BLASTP program to identify putative homologs (4). A multiple-sequence alignment was constructed with the T-Coffee algorithm (23). The alignment includes one representative amino acid sequence from each genus of Poxviridae and one sequence from Plasmodium falciparum strain 3D7. Amino acids at invariant positions are shown as white letters on black background. Amino acids at positions that are invariant in all but one sequence are shown as white letters against gray background. Other conserved amino acids are shown in bold type and boxed. Position numbers are indicated for each sequence at the beginning and the end of the aligned fragment. Abbreviations: VACV, vaccinia virus (Chordopoxvirinae); FWPV, fowlpox virus (Avipoxvirinae); LSDV, lumpy skin disease virus (Capripoxvirinae); MOCV, molluscum contagiosum (Molluscipoxvirinae); MYXV, myxoma virus (Leporipoxvirinae); SWPV, swinepox virus (Suipoxvirinae); YLDV, Yaba-like disease virus (Yatapoxvirinae); AMEV, Amsacta moorei entomopoxvirus (Entomopoxvirinae B); PF, Plasmodium falciparum (accession code NP_704661). The virus strain and ORF designation are also indicated after the virus.
|
![]() View larger version (20K): [in a new window] |
FIG. 2. Construction and characterization of a recombinant VACV with an inducible L3L ORF (vL3Li). (A) Genome structure of vL3Li. Three loci at which vL3Li differs from the WR strain are shown: L3L, J2R (thymidine kinase [TK]), and A56R (hemagglutinin [HA]). Below the loci are schematics of the modifications. Abbreviations: T7pol, bacteriophage T7 RNA polymerase gene; lacO, lac operator; P11, a VACV late promoter; P7.5, a VACV early/late promoter; lacI, E. coli lac repressor gene; gpt, E. coli guanine phosphoribosyltransferase gene; PT7, bacteriophage T7 promoter; EMC, encephalomyocarditis virus cap-independent translation enhancer element. (B) Plaque phenotype of vL3Li. BS-C-1 cells were infected with vL3Li and vT7lacOI in the absence (+) or presence () of 25 µM IPTG. After 48 h, cells were fixed and stained with crystal violet. (C) Dependence of vL3Li replication on IPTG. BS-C-1 cells were infected with 10 PFU per cell of vT7lacOI or with vL3Li in the presence of 0 to 100 µM IPTG, and viral yield was determined after 24 h by plaque assay in the presence of 25 µM IPTG. The insert shows a Western blot of whole-cell extracts prepared from vL3Li-infected cells at the indicated IPTG concentrations. (D) One-step growth curve of vL3Li. BS-C-1 cells were infected with 10 PFU per cell of vT7lacOI or vL3Li in the absence or presence of 25 µM IPTG, and virus yield was determined from 2 to 48 h postinfection (h p.i.).
|
![]() View larger version (43K): [in a new window] |
FIG. 3. Synthesis and IMV packaging of L3. (A) L3 expression kinetics. BS-C-1 cells were infected with 10 PFU per cell of vT7lacOI, and whole-cell extracts were prepared at the indicated times (hours postinfection [h p.i.]). Extracts from uninfected cells (U) and cells infected in the presence of cytosine arabinoside (AraC) were also prepared; extracts were analyzed by SDS-PAGE and Western blotting with antiserum to L3 as described previously (20). The positions and masses (in kilodaltons) of marker proteins are indicated on the left. (B) L3 is packaged into IMVs. Sucrose gradient-purified IMVs were extracted with NP-40 or NP-40 plus DTT or mock treated and separated into soluble (S) and pellet (P) fractions. Proteins in both fractions were separated by SDS-PAGE followed by Western blotting with anti-P4b, anti-L3, or anti-A14 sera. The positions and masses (in kilodaltons) of marker proteins are indicated on the left. WCE, whole-cell extracts.
|
VACV late proteins are synthesized and processed normally. VACV gene expression occurs as an ordered synthesis of early, intermediate, and late proteins. Concomitantly, host protein synthesis is reduced, allowing abundant late viral proteins to be selectively labeled with radioactive amino acids. Viral protein synthesis was analyzed by pulse-labeling BS-C-1 cells infected with vL3Li in the presence or absence of 25 µM IPTG. Whole-cell extracts of labeled cells were subjected to SDS-PAGE and autoradiography. As shown in Fig. 4, the pattern of viral protein synthesis 9 h after infection was similar in cells infected with the parental vT7lacOI and vL3Li with or without IPTG.
![]() View larger version (83K): [in a new window] |
FIG. 4. Synthesis and processing of viral late proteins. BS-C-1 cells were infected with 4 PFU per cell of vL3Li in the absence () or presence (+) of 25 µM IPTG or with 4 PFU per cell of vT7lacOI in the presence (+) or absence () of 100 µg/ml rifampin (RIF). Infected cells were pulse-labeled with 100 µCi of [35S]methionine and [35S]cysteine per ml for 30 min at 9 h postinfection, and whole-cell lysates were prepared either immediately (pulse [P]) or after a further 15-h incubation in the presence of excess unlabeled methionine and cysteine (chase [C]). Proteins were separated by SDS-PAGE and visualized by autoradiography. The migration positions and masses (in kilodaltons) of marker proteins are indicated on the left. The positions of major core protein precursors P4a and P4b as well as their proteolytically processed mature forms 4a and 4b are indicated on the right.
|
L3 is not required for formation of intracellular or extracellular virions. To directly examine the effect of L3 repression on the stage of virus assembly, thin sections of cells infected with vL3Li in the absence of IPTG were examined by transmission electron microscopy (Fig. 5). All stages of morphogenesis, including immature virions, IMVs, intracellular enveloped virions, and extracellular cell-associated enveloped virions (CEVs), were observed and were indistinguishable in morphology from those seen in the presence of IPTG (data not shown), a finding consistent with the apparently normal processing of core proteins.
![]() View larger version (111K): [in a new window] |
FIG. 5. Electron microscopy of infected cells. BS-C-1 cells were infected with 3 PFU per cell of vL3Li in the absence of IPTG. Cells were fixed and prepared for transmission electron microscopy at 20 h after infection. Lower (A) and higher (B) magnification electron micrographs are shown with their scale indicated by bars. Abbreviations: c, crescent; IV, immature virion; n, nucleoid within an IV; IMV, intracellular mature virion; IEV, intracellular enveloped virion; CEV, cell-associated enveloped virion.
|
![]() View larger version (25K): [in a new window] |
FIG. 6. Detection of CEVs and actin tails by confocal microscopy. BHK cells were infected with 2 PFU per cell of vL3Li in the absence () or presence (+) of 25 µM IPTG. After 24 h, cells were fixed and CEVs were visualized by staining with anti-B5 monoclonal antibody, followed by Cy5-conjugated goat anti-rat antibody (green). Cells were then washed and permeabilized prior to staining filamentous actin with Alexa Fluor 568 coupled to phalloidin (red) and staining DNA with diamino-2-phenylindole dihydrochloride (blue). White arrows point to examples of CEVs at the tips of actin tails. Images are representative of the larger populations and are shown as maximum-intensity projections calculated from stacks of optical sections obtained by confocal microscopy.
|
Negatively stained IMVs from the L3+ and L3 preparations had indistinguishable morphologies (Fig. 7A). In addition, when proteins from equal numbers of particles of both preparations were separated by SDS-PAGE and visualized by Coomassie blue staining, no significant differences in the major protein bands were apparent (Fig. 7B). The presence of several specific enzymatic, structural, and membrane proteins was confirmed by preparing immunoblots (Fig. 7C). Again, no differences between the preparations were apparent other than the expected absence of L3 from IMVs produced without IPTG. Furthermore, similar amounts of viral DNA were detected on slot blots prepared from equal amounts of L3 and L3+ IMV (Fig. 7D). The association of the viral DNA with the particles was confirmed by cesium chloride density gradient centrifugation (data not shown).
![]() View larger version (43K): [in a new window] |
FIG. 7. Morphology and protein and DNA contents of L3+ and L3 IMVs. (A) Morphology. vL3Li IMVs produced in the absence (L3) and presence (L3+) of IPTG were purified by sucrose gradient centrifugation, adsorbed to grids, washed, and negatively stained. Electron micrographs of representative particles are shown with a scale bar. (B) Polypeptide composition of purified virions. Proteins from 0.14 OD260 unit of purified L3+ and L3 virions were separated by SDS-PAGE and stained with colloidal Coomassie blue. The migration positions and masses (in kilodaltons) of marker proteins are indicated on the left. (C) Immunoblots of purified virions. Proteins from 0.01 OD260 unit of purified L3+ and L3 virions were separated by SDS-PAGE and transferred to nitrocellulose membranes, and the indicated core and membrane proteins were detected immunologically. A composite of the bands is shown. The antibodies used were as follows: anti-J6, RNA polymerase subunit Rpo147; anti-H4, RNA polymerase-associated protein; anti-H6, topoisomerase; anti-A3, structural protein 4b and its precursor P4b; anti-A17, IMV membrane protein; anti-L1, IMV membrane protein; anti-A14, IMV membrane protein. (D) DNA content of purified virions. (Right) The indicated amounts (ODU, OD260 unit) of purified virions were disrupted; the DNA contained in the virions was denatured and adsorbed to a nylon membrane. VACV DNA was detected by annealing a radioactively labeled VACV DNA fragment. The graph shows DNA content per particle normalized to the content in the L3+ virions.
|
![]() View larger version (40K): [in a new window] |
FIG. 8. Binding and penetration of purified virions into cells. Equal numbers of purified L3+ and L3 virions were allowed to adsorb to HeLa cells for 1 h at 4°C and then either fixed immediately or fixed after further incubation at 37°C for 2 h. Cells were washed, permeabilized, and sequentially stained with mouse monoclonal anti-L1 antibody and rabbit anti-A4 sera. The primary antibodies were detected with Alexa Fluor 594-coupled goat anti-mouse antibody (red) and Alexa Fluor 488-coupled goat anti-rabbit antibody (green), respectively. DNA was stained with diamino-2-phenylindole (blue). Stacks of optical sections were obtained by confocal microscopy, and representative images are shown here as maximum-intensity projections.
|
![]() View larger version (31K): [in a new window] |
FIG. 9. Early gene expression. (A) Analysis of three viral early RNAs in cells infected with purified L3+ and L3 virions. BS-C-1 cells were mock infected (uninfected [U]) or infected with 10 PFU per cell of L3+ virions or with an equal number of L3 virions. At 2 h postinfection (p.i.), total RNA was extracted, glyoxylated, and resolved by agarose gel electrophoresis. RNA was then transferred to a nylon filter, and transcripts were detected with radioactively labeled DNA fragments obtained by PCR amplification of E9L (DNA polymerase), A20R (DNA polymerase processivity factor), and C11R (VACV growth factor) sequences. The positions and lengths (in kilobases) of RNA size markers are indicated on the left. (B) Accumulation of an early RNA. BS-C-1 cells were treated with 40 µg/ml of cytosine arabinoside (AraC) for 1 h before infection with 10 PFU per cell of purified L3+ virions or with equal numbers of purified L3 or WR virions. Infected cells were maintained in the presence of AraC for the indicated times before isolation of total RNA. C11R RNA levels were determined by Northern blot analysis as described above for panel A. The RNA was quantified with a phosphorimager and plotted on a logarithmic scale.
|
-32P]UTP into trichloroacetic acid-insoluble material was determined. In each case, RNA synthesis was proportionate to virus added, but there was a fourfold difference in transcription between the two viruses (Fig. 10A). Kinetic experiments suggested that the rate of transcription by L3 virions decreased over time, leading to a bigger difference in total transcript levels at later times (Fig. 10B). In addition, the fraction of transcripts released from cores was higher in reaction mixtures containing L3+ virions (Fig. 10C) than in those containing L3 virions (Fig. 10D). The lengths of RNAs produced in the presence and absence of L3 were similar, although small pattern differences were noted (data not shown).
![]() View larger version (23K): [in a new window] |
FIG. 10. RNA synthesis and release by permeabilized virions. (A) In vitro transcription by different numbers of permeabilized virions. Sucrose gradient-purified L3+ or L3 IMVs were permeabilized with nonionic detergent and incubated with [ -32P]UTP and other unlabeled ribonucleoside triphosphates for 30 min. Incorporation of [ -32P]UMP into trichloroacetic acid-precipitable material was determined by scintillation counting. Lines are best-fit regressions with slopes of 4 x 106 and 1 x 106 for L3+ and L3 IMVs, respectively. ODU260, OD260 unit. (B to D) Kinetic analysis of transcription by permeabilized virions. Aliquots were withdrawn from transcription reaction mixtures and analyzed as described above for panel A (B) or separated into core-associated and released RNA fractions for L3+ (C) and L3 (D) virions. Note the different scales in panels C and D. (E) Cap methylation by permeabilized virions. Transcription reactions were carried out as described above for panel A except for the inclusion of the methyl donor [3H]methyl-S-adenosylmethionine and the omission of radioactively labeled UTP.
|
-32P]UTP incorporation is consistent with inhibition of transcription initiation. L3 is not required for template-dependent transcription activity by IMV extracts. The reduced transcription activity of permeabilized L3 virions despite the apparent presence of a normal complement of transcription enzymes raised the question of whether L3 was required for template-dependent transcription per se or whether L3 was required only for transcription within cores. To address this issue, equal numbers of L3 and L3+ virions were solubilized with deoxycholate and endogenous nucleic acid was removed by DEAE-cellulose chromatography. Fractions eluting from the DEAE column contained similar amounts of transcription factors as exemplified by the RNA polymerase-associated protein Rap94, which is required for early transcription, and the RNA polymerase subunit Rpo19 (Fig. 11A), irrespective of the presence of L3. Fractions from both extracts were able to transcribe a linear duplex DNA substrate containing an early promoter at comparable levels (Fig. 11A), and the sizes of the transcribed products were identical to each other (Fig. 11B) and to RNA made by a soluble extract of WR virions (not shown). No transcription was detected in the absence of template.
![]() View larger version (41K): [in a new window] |
FIG. 11. Promoter-dependent transcription by mutant virion extracts. (A) Components of the transcription machinery were solubilized from L3+ and L3 IMVs with deoxycholate and separated from endogenous genomes by DEAE chromatography. Fractions were collected, and template-dependent transcription activity was measured by UMP incorporation. In addition, the presence of Rap94 and Rpo19, both components of the early promoter-specific RNA polymerase holoenzyme, as well as L3 were analyzed by SDS-PAGE followed by immunoblotting. Results are shown for DEAE fractions 2 to 7. (B) RNA product size. RNA transcripts were purified from transcription reactions carried out with the peak activity fractions of the DEAE column and separated on a 4% denaturing polyacrylamide gel. Reactions were carried out in the presence (+) or absence () of template with L3+ or L3 virus extracts. nts, nucleotides.
|
|
|
|---|
To investigate the function of L3, a mutant in which L3 expression was dependent on the presence of IPTG was constructed. In the absence of inducer, the mutant virus was unable to spread or produce infectious progeny, indicating that L3L is an essential gene. Virus stocks prepared in the presence of IPTG were used to infect cells in the presence or absence of the inducer. The pattern of late protein synthesis was normal, and proteolytic processing of core proteins occurred irrespective of the presence of IPTG, suggesting that the L3 protein is unnecessary for morphogenesis. This was confirmed by examination of transmission electron microscopic images of infected cells, which showed immature and mature virus particles. Furthermore, the cell-associated enveloped virions formed in the absence of IPTG were associated with actin tails, which are important for cell-to-cell spread. Virions assembled in the absence of IPTG and therefore lacking L3 were purified and found to be indistinguishable in electron microscopic appearance, complement of major proteins, and DNA content from virions made in the presence of IPTG and containing L3. The presence of several specific structural, membrane, and enzymatic proteins was confirmed by immunoblotting. In particular, several examined components of the VACV transcription machinery, which is packaged into virions, were present in unchanged amounts. Nevertheless, L3 virions had only 2% of the specific infectivity of L3+ virions.
Several conditionally lethal mutant VACVs that produce virions with normal appearance and DNA content have been described elsewhere (8, 14, 18, 27, 29, 33, 34). Such mutants have defects in virus entry (26, 27) or early transcription (8, 14, 18, 29, 33, 34). Since the proteins required for entry are membrane proteins, we anticipated correctly that purified L3 virions would adhere to and enter cells with an efficiency comparable to that of L3+ virions. Instead, cells infected with purified L3 virions contained very little viral early RNA compared to cells infected with equal numbers of L3+ particles. Early transcription is carried out in the cytoplasm within VACV cores, which contain packaged DNA and the necessary proteins. Nascent RNAs are believed to be extruded from the intact cores. The reduced amounts of early transcripts in vivo could therefore be explained either by reduced transcriptional activity of viral cores or by a more rapid turnover of extruded RNAs. We measured the transcriptional activity of L3+ and L3 viral cores directly by permeabilizing IMVs in vitro under reducing conditions and found that the absence of L3 results in an up to 10-fold reduction of transcriptional activity, indicating that inhibition of transcription is the likely explanation for the very low early RNA levels in vivo. The RNA produced by L3 virions was also released to a lesser extent, but the length of the RNA appeared to be similar to that synthesized by L3+ virions. The rate of transcription fell over time for L3 virions, but not for L3+ virions. The rate of RNA capping by L3 IMVs was markedly reduced after initially proceeding at a rate comparable to that of L3+ virions. Since RNA contains only one cap, which is at the 5' end, the rapid drop in capping activity could be due to a reduction in transcription initiation or to a sudden decrease in capping of transcripts. The decrease of UTP incorporation, which occurs slightly later than the decrease in capping, is consistent with an overall reduction of transcription initiations, maybe after the first round of RNA synthesis.
Approximately 20 IMV proteins are known to be involved in transcription or RNA modification, including the eight subunits of the RNA polymerase, an RNA polymerase-associated protein, the early transcription factor, the capping enzyme, the poly(A) polymerase, two helicases, a single-stranded nucleic acid binding protein, a topoisomerase, and a phosphatase (6). Suppression of some of these proteins results in defects during morphogenesis, whereas others are dispensable for the formation of normal-appearing IMVs. Since early transcription has been reconstituted with purified components (7) and we could not detect L3 in a purified RNA polymerase preparation, it seemed unlikely that L3 was required for transcription of naked templates. Indeed, the normal template-dependent transcription activity of soluble L3-deficient virion extracts confirmed that L3 was required for transcription only within the confines of the intact core. In this regard, the absence of L3 causes a defect similar to that produced by the absence of the H6 topoisomerase (8), the I8 nucleoside triphosphate phosphohydrolase II (14), the H1 phosphatase (18), or the L4 DNA/RNA binding protein (33). While the mechanism of L3 action remains to be determined, one can hypothesize that L3 may contribute to functions that are required for the transcription of topologically constrained, chromatin-like templates, such as promoter unwinding, maintenance of single-stranded DNA, or regulation of supercoiling.
This research was supported by the intramural research program of the NIAID, NIH.
|
|
|---|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»