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Journal of Virology, December 2005, p. 14614-14621, Vol. 79, No. 23
0022-538X/05/$08.00+0 doi:10.1128/JVI.79.23.14614-14621.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Departments of Pediatrics,1 Internal Medicine, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242,2 Department of Microbiology and Molecular Genetics, Harvard University, Cambridge, Massachusetts 021383
Received 16 June 2005/ Accepted 14 September 2005
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Limited human
pathological studies demonstrate that the respiratory tract is a major
site of SARS-CoV infection and morbidity
(8,
30). Two previously
recognized human coronaviruses (HCoV-OC43 and HCoV-229E) cause
30% of upper respiratory tract infections
(14,
28), and, recently, two
additional human coronaviruses, HCoV-NL63
(42) and HKU1
(46), were identified in
association with bronchiolitis and pneumonia, respectively.
Epidemiologic data suggest that infection with NL63 is common, as most
adults have neutralizing antibodies to the virus
(12). Limited studies of
these other human coronaviruses indicate that they infect respiratory
epithelia (2,
4,
44). Little isknown regarding the initial steps of SARS-CoV interaction with the host
cells in the respiratory tract, such as the cell types in which primary
viral infection and replication occur. Viral RNA has been localized to
cells of the conducting airways and alveoli by in situ hybridization in
SARS postmortem samples
(40). Experimental
evidence in several animal models, including nonhuman primates
(7,
19,
27,
38), mice
(9,
13), ferrets
(25), and Syrian hamsters
(34) indicates that
direct application of SARS-CoV to the respiratory tract results in
pulmonary infection. Furthermore, epidemiologic analysis of a Toronto
SARS outbreak supports the hypothesis that the virus is transmitted by
respiratory droplets
(49). Thus, it appears
likely that interactions between SARS-CoV and respiratory epithelia
play an important role in the genesis of SARS.
The cellular
receptors mediating binding and entry have been identified for some
coronaviruses associated with human disease. HCoV-229E uses CD13 as a
receptor (48). The
cellular receptors for HCoV-OC43 and HKU1 are currently unknown.
Recently, angiotensin converting enzyme 2 (ACE2) was identified as a
receptor for both SARS-CoV
(21) and NL63
(12). ACE2 is a
membrane-associated aminopeptidase expressed in vascular endothelia,
renal and cardiovascular tissue, and epithelia of the small intestine
and testes (6,
10,
11). A region of the
extracellular portion of ACE2 that includes the first
-helix
and lysine 353 and proximal residues of the N terminus of
ß-sheet 5 interacts with high affinity to the receptor binding
domain of the SARS-CoV S glycoprotein
(22).
Several unanswered questions remain regarding ACE2 expression in human respiratory epithelia and its role as a receptor for SARS-CoV. These include the identification of the specific epithelial cell types expressing ACE2, the polarity of ACE2 expression, and whether SARS-CoV infection of respiratory epithelia is ACE2-dependent. Here we investigate interactions between SARS-CoV and human airway epithelia using native tissue and a primary culture model of polarized, well-differentiated tracheal and bronchial epithelia. Our findings indicate that the state of cell differentiation and ACE2 expression levels are both important determinants of the susceptibility of human airway epithelia to infection.
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Immunoblot analysis. Cells or tissues were lysed in 0.1% Triton X-100 in phosphate-buffered saline (PBS), and total protein was separated on a sodium dodecyl sulfate-7.5% polyacrylamide gel electrophoresis gel and transferred to polyvinylidene difluoride membrane. Goat anti-ACE2 polyclonal primary antibody (catalog no. AF933, R & D Systems, Minneapolis, MN), horseradish peroxidase-conjugated donkey anti-goat secondary antibody, mouse anti-foxj1 monoclonal primary antibody (gift of S. Brody, Washington University), and a horseradish peroxidase-conjugated goat anti-mouse secondary antibody were used. Primary antibody binding was visualized using SuperSignal chemiluminescent substrate (Pierce, Rockford, IL).
Immunofluorescence staining. Airway epithelia were fixed in 4% paraformaldehyde for 5 min at room temperature and washed with PBS. Five percent bovine serum albumin in PBS was used to block nonspecific antibody binding. An anti-ACE2 monoclonal antibody (MAB933; R & D Systems, Minneapolis, MN) was applied to cells (both apical and basolateral surfaces for air-liquid interface-cultured cells). Epithelia were then incubated at 37°C for 1 h and again washed with PBS. Rabbit anti-mouse fluorescein isothiocyanate-conjugated secondary antibody (F-4143; Sigma, St. Louis, MO) was added to cells and incubated at 4°C overnight. Cells were then washed with PBS, and a Cy3-labeled mouse anti-ß-tubulin IV monoclonal antibody (C-4585; Sigma) was added. Cells were incubated at 37°C for 1 h, followed by PBS washes, and then mounted with DAPI (4',6'-diamidino-2-phenylindole) VectaShield (Vector Labs, Burlingame, CA). Nuclei were stained with To-pro-3 (T3605; Sigma, St. Louis, MO). The SARS-CoV nsp1 protein was localized in cells fixed with 100% methanol using a rabbit polyclonal anti-nsp1 primary antibody (gift of M. Denison) (33) and a mouse anti-rabbit fluorescein isothiocyanate-conjugated secondary antibody (catalog no. A11088, Molecular Probes, Eugene, OR).
Surface biotinylation. The apical or basolateral surfaces of airway epithelia were treated with 1 mg/ml N-hydroxysulfosuccinimidobiotin (Pierce, Rockford, IL) in PBS for 30 min at 25°C. The epithelial surface was washed and then incubated with 100 mM glycine in PBS for 20 min at 25°C to quench unreacted biotin. Epithelial protein lysates were prepared by sonication in lysis buffer, and biotinylated proteins were precipitated using neutravidin covalently linked to immobilized diaminodipropylamine (Pierce). Biotinylated proteins were released in 8% sodium dodecyl sulfate-containing loading buffer, boiled, and analyzed by immunoblotting for ACE2. ErB2 was detected as a control basolateral membrane marker (43) using rabbit polyclonal anti-c-erbB2 antibody (Dako Corporation, Carpinteria, CA).
Scanning electron microscopy (SEM). Epithelia were fixed in 2.5% glutaraldehyde in Na cacodylate buffer for 30 min and rinsed with 0.1 M Na cacodylate buffer three times. Samples were postfixed in 1% OsO4 for 1 h and sequentially rinsed with 0.1 M Na cacodylate buffer and H2O. Samples were then serially dehydrated using 25% to 100% ethanol. After critical-point drying, samples were mounted on stubs, sputter coated, and examined using a Hitachi F-4000 electron microscope.
Real-time reverse transcription-PCR mRNA analysis.
Total cellular RNA was isolated using
TRI-Reagent (MRC, Cincinnati, OH) or a commercial spin column isolation
kit (Stratagene, La Jolla, CA), and 1 µg was reverse
transcribed using a reverse transcription (RT)-PCR kit (Ambion, Austin,
TX). An aliquot of cDNA was subjected to PCR using an iCycler iQ
fluorescence thermocycler (Bio-Rad, Hercules, CA) with SYBR green I DNA
dye (Molecular Probes, Eugene, OR) and Platinum Taq DNA
polymerase (iQ SYBR green Supermix kit, Bio-Rad). PCR conditions
included denaturation at 95°C for 3 min and then for 35 cycles
of 94°C for 30 s, 60°C for 30 s,
and 72°C for 30 s, followed by 5 min at 72°C
for elongation. The following primers were used: (i) human ACE2 forward
5'-GGACCCAGGAAATGTTCAGA-3' and
reverse
5'-GGCTGCAGAAAGTGACATGA-3',
(ii) SARS-CoV N gene forward/leader
5'-ATATTAGGTTTTTACCCAGG-3'and reverse
5'-CTTGCCCCATTGCGTCCTCC-3', (iii)
SARS-CoV S gene forward/leader
5'-ATATTAGGTTTTTACCCAGG-3' and
reverse
5'-CTCCTGAGGGAACAACCCTG-3', and
(iv) human hypoxanthine phosphoribosyltransferase (HPRT) forward
5'-CCTCATGGACTGATTATGGAC-3'and reverse
5'-CAGATTCAACTTGCGCTCATC-3'.
Fluorescence data was captured during the 10-s dwell to ensure that
primer dimers were not contributing to the fluorescence signal, and
specificity of the amplification was confirmed using melting curve
analysis. Data was collected and recorded by iCycler iQ software
(Bio-Rad) and initially determined as a function of threshold cycle
(CT). Levels of mRNA were expressed relative to
control HPRT levels, which were calculated as
2
CT. In some samples, PCR products were visualized on 2% agarose gels with
ethidium bromide.
Adenoviral vectors. E1-deleted replication incompetent adenoviral vectors expressing human ACE2, Escherichia coli ß-galactosidase, and foxj1 under the control of the cytomegalovirus promoter were produced as previously described (1).
Preparation of SARS S protein-pseudotyped lentivirus and infection of airway epithelia.
The SARS-CoV S
protein cDNA (Urbani strain "S-H2," as described
reference 21) was used to
pseudotype feline immunodeficiency virus (FIV) expressing a
nuclear-targeted ß-galactosidase by using previously described
methods (45).
The virus was concentrated 250-fold by centrifugation, and
titers were determined on HT1080 cells, obtaining titers of
2
x 105 to 4 x 106transducing units/ml. Well-differentiated human airway epithelia were
transduced with the pseudotyped FIV by applying 100 µl of
solution to the apical surface of airway epithelia. After 1 h
of incubation at 37°C, virus was removed and cells were
incubated at 37°C for 2 days. To infect epithelia from the
basolateral side, the Millicell insert was turned over, and virus was
applied to the basolateral surface for 1 h in
100 µl of medium. Following the 1-h infection,
virus was removed and the insert was turned upright and incubated at
37°C in 5% CO2 for 2
days.
ß-Galactosidase activity assays. The Galacto-Light chemiluminescent reporter assay (Tropix, Bedford, MA) was used to quantify ß-galactosidase activity following the manufacturer's protocol. Relative light units were quantified using a luminometer (Monolight 3010; Pharmingen, San Diego, CA) and standardized to total protein in the sample.
Preparation of wild-type SARS-CoV and infection of airway epithelia.
SARS-CoV (Urbani strain) was produced
in Vero E6 cells under BSL3 containment conditions. Virus titers were
determined on Vero E6 cells with typical yields of
4 x
106 PFU/ml. Epithelia derived from three donors were
infected in duplicate with SARS-CoV from the apical surface
(multiplicity of infection [MOI], 0.8). Following a 30-min incubation
at 37°C, virus was removed and 10 washes with PBS were
performed. A sample was collected by adding and removing
500 µl of medium from the apical side of one
epithelium from each donor. A total of 500 µl of medium was
added to the basolateral side of the remaining epithelia, and
24 h later, samples were collected for titer
determinations.
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FIG. 1. ACE2
is expressed on human airway epithelia. (A) ACE2 protein levels were
determined using immunoblot analysis of extracts from human airway and
alveolar tissue. The control is recombinant ACE2 released into the
supernatant from A549 cells infected with an adenoviral vector
expressing human ACE2. The positions of ACE2 and -tubulin are
indicated by arrows. MW, molecular weight in thousands. (B)
ACE2 protein location in polarized human airway epithelia was
determined using immunofluorescence staining for ACE2 (green),
ß-tubulin IV (red), and nuclear DAPI (blue). Confocal
fluorescence photomicroscopic images are presented en face (top) and
from vertical sections (bottom). Colocalization is shown by yellow in
the merged images. Bar, 10 µm. (C) ACE2 protein location in
polarized human airway epithelia was determined by selective apical or
basolateral biotinylation, immunoprecipitation of biotinylated surface
proteins, and immunoblot analysis for ACE2 or control basolateral
erbB2. MW, molecular weight in thousands. The positions of ACE2 and
erbB2 are indicated by
arrows.
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FIG. 2. ACE2 expression is associated with airway epithelial cell differentiation. (A) Ciliated epithelial cell differentiation in cultures of primary airway epithelial cells under air-liquid interface or resubmerged conditions was verified by SEM of the apical epithelial surface. Bar, 10 µm. (B) ACE2 mRNA levels were determined using real-time RT-PCR analysis of samples from A549 cells or primary hTBE cells cultured under undifferentiating submerged (Sub), differentiating ALI, or resubmerged (Resub) conditions. Values are expressed as mean mRNA levels relative to control HPRT mRNA levels plus or minus standard deviations (SD) (n = 3), and the asterisk indicates a significant difference in mRNA levels between air-liquid interface and resubmerged conditions. (C) ACE2 protein levels were determined using immunoblot analysis of extracts from A549 or primary hTBE cells. The positions of ACE2, foxj1 (to verify epithelial cell differentiation status), and ß-actin are indicated by arrows. MW, molecular weight in thousands. (D) ACE2 protein levels were determined using immunoblot analysis of extracts from hTBE cells under submerged conditions that were infected with a recombinant adenoviral vector that expressed ACE2, control transgene (ß-galactosidase), or foxj1. MW, molecular weight in thousands.
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FIG. 3. SARS-CoV S protein-pseudotyped FIV infects differentiated airway epithelia best from the apical surface. (A) ß-galactosidase levels were determined by enzyme activity in 293 cells transfected with a plasmid expressing control (Ctl) transgene or human ACE2 and then infected with SARS-S protein-pseudotyped FIV expressing ß-galactosidase. ND, not detected. (B) ß-galactosidase levels were determined in A549 cells (black bars) or primary hTBE cultured under submerged conditions (white bars) that were first infected with an adenoviral vector expressing ACE2 at the indicated MOI and then infected with SARS-S protein-pseudotyped FIV expressing ß-galactosidase. (C) ß-Galactosidase levels determined in extracts from A549 cells or primary hTBE cultured under submerged or ALI conditions that were infected from the apical surface with SARS-S protein-pseudotyped FIV expressing ß-galactosidase. (D) ß-galactosidase levels determined in primary hTBE cultured under ALI conditions that were infected from the apical or basolateral surface with vesicular stomatitis virus-G or SARS-S protein-pseudotyped FIV. In panels A through D, values are expressed as means plus or minus SD (n = 4 to 6) and a significant difference from levels on uninfected cells (A and B), hTBE cells cultured under submerged conditions (C), or cells infected from the apical surface (D) is indicated by an asterisk. RLU, relative light units.
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FIG. 4. Infection
of differentiated airway epithelia by SARS-CoV. (A) SARS-CoV N and S
gene mRNA levels were determined using real-time RT-PCR analysis of
A549 cells or primary hTBE cultured under submerged or ALI conditions
and infected with SARS-CoV from the apical surface at an MOI of 0.8 for
24 h. Values are expressed as mean mRNA levels relative to
control HPRT mRNA levels plus or minus SD (n = 2). ND,
not detected. An asterisk indicates a significant difference in mRNA
levels between submerged and ALI conditions. (B) PCR products in panel
A for hTBE cells cultured under ALI conditions were visualized by
ethidium bromide. bp, base pairs. (C) SARS-CoV nsp1 replicase protein
location in polarized human airway epithelia that were left uninfected
or infected from the apical or basolateral side with SARS-CoV.
Twenty-four hours following infection with SARS-CoV viral replication,
complexes were localized using immunofluorescence staining for nsp1
(green) and nuclear To-pro-3 (red). Bar, 50 µm. (D)
Colocalization of SARS-CoV nsp1 protein and cilia in polarized human
airway epithelia. Airway epithelia were infected as described in the
legend for Fig. 4C and
then fixed and immunostained for nsp1 (green) or ß-tubulin IV
(red) as a marker for ciliated cells. The merged image shows
colocalization of nsp1 and ß-tubulin, indicating that the
predominant infected cell types were ciliated epithelia. Bar, 10
µm.
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0.8 for 30 min and then measured the
release of virus 24 h later. As shown in Table
1, these results indicate that, following apical application of SARS-CoV,
a productive infection occurred and virus was preferentially released
apically. We confirmed SARS-CoV infection of polarized epithelia by
immunostaining cells for the SARS-CoV nsp1 protein 24 h
following infection. Confocal microscopy revealed viral nsp1 protein in
the cytoplasm, consistent with replication complexes, following apical
application of the virus
(Fig. 4C).
Control, noninfected cells showed no staining. The infection of
permissive Vero E6 cells showed intense cytoplasmic staining only in
the presence of SARS-CoV infection (data not shown). To better define
the cell types infected by SARS-CoV in this model, we colocalized the
nsp1 and ß-tubulin IV proteins (Fig.
4D). Nsp1 staining was
observed in perinuclear regions and distributed throughout the
cytoplasm. In addition, we observed some areas of colocalization of
nsp1 and ß-tubulin IV, suggesting that replication complexes
may assemble in the cytoplasm near or within cilia. These findings
indicate that ciliated cells are the predominant cell type infected by
SARS-CoV in well-differentiated airway
epithelia. |
View this table: [in a new window] |
TABLE 1. Polar
release of SARS-CoV following apical application to airway
epitheliaa
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ACE2 expression in human tissues correlates with known sites of infection, including lung and intestine (6, 10, 11). ACE2 is an ectoenzyme that converts angiotensin II to angiotensin (1-7) (41), but its physiologic role in the airways is currently unknown. The predominant apical distribution of ACE2 suggests that the enzyme may be available to cleave peptides at the mucosal surface of the airway, but the native substrates in the lung have not yet been identified.
Epidemiologic data indicate that SARS-CoV is spread by respiratory droplets and contact (49). While such findings suggest that the virus enters the host through the mucosa of the respiratory tract and the eyes, many details of the initial steps of respiratory cell infection by SARS-CoV in humans are poorly understood. Limited human pathology data, primarily autopsy studies from SARS patients with severe disease and secondary complications, including respiratory failure, indicate the presence of virus in both proximal and distal pulmonary epithelia (40). Most data from human respiratory tissue from SARS patients was obtained two or more weeks following disease onset (8, 15, 20, 40). Lung tissue from such patients exhibits changes of diffuse alveolar damage, desquamated epithelial cells, type II cell hyperplasia, fibrin and collagen deposits in the alveolar space, increased mononuclear infiltrates in the interstitium, and, in some cases, the presence of multinucleated syncytial cells. Such changes reflect the combined effects of primary infection, host immune responses, and therapeutic interventions.
Human ACE2 appears necessary and sufficient to serve as a receptor for SARS-CoV (21). While both dendritic-cell-specific ICAM3-grabbing nonintegrin (DC-SIGN; CD209) and DC-SIGNR (L-SIGN, CD209L) can enhance SARS-CoV infection of ACE2 expressing cells, these proteins are not sufficient to support infection in the absence of ACE2 (16, 26, 47). Several recent reports using SARS-CoV or retroviral vectors pseudotyped with SARS S protein (31, 39, 47) (29) indicated that human airway epithelial cell lines were poorly transduced, an unexpected finding that raised questions regarding the ability of respiratory epithelia to support SARS-CoV infection. The present studies help explain these results. Since SARS-CoV infection of airway epithelia is ACE2-dependent, and ACE2 expression is greatest in well-differentiated cells, the low transduction efficiencies of nonpolarized, poorly differentiated cells are not unanticipated.
Our findings suggest that the epithelium of the conducting airways, the major site of respiratory droplet deposition, supports the replication of SARS-CoV. The observation that ACE2 complementation of poorly differentiated epithelia enhanced transduction with S protein-pseudotyped virions in a dose-dependent manner further supports its role as a receptor. In the setting of a productive infection of conducting airway epithelia, the apically released SARS-CoV might be removed by mucociliary clearance and gain access to the gastrointestinal tract. SARS-CoV infects cells in the gastrointestinal tract, and diarrhea is a clinical sign commonly observed in patients with SARS (5). Furthermore, the preferential apical exit pathway of virions would favor the spread of infection along the respiratory tract. While not a focus of this study, pathological data indicate that SARS-CoV infects type II pneumocytes (40). The infection and release of virus in this compartment with its close proximity to the pulmonary capillary bed might allow systemic spread of virus to distant organs, especially in the context of inflammation and alveolar capillary leak. This pattern of apical infection and release of virus in polarized epithelia is reminiscent of transmissible porcine gastroenteritis virus (36) and HCoV-229E (44). In contrast, mouse hepatitis virus-A59 enters polarized cells from the apical surfaces and exits from the basolateral side (35).
In summary, studies in models of human airway epithelial differentiation and polarity reveal that SARS-CoV infects well-differentiated cells from the apical surface and preferentially exits from the apical side. These findings should also apply to the entry of NL63 in human airway epithelia. ACE2 expression in airway epithelia appears to be both necessary and sufficient for SARS-CoV infection. Airway epithelial expression of ACE2 is dynamic and associated with cellular differentiation, a finding that may underlie susceptibility to infection. The apical expression of ACE2 on epithelia indicates that this coronavirus receptor is accessible for topical application of receptor antagonists or inhibitors. To date, the factors regulating ACE2 expression have not been identified. Future studies of the ACE2 promoter and gene expression associated with cell differentiation may reveal regulators of ACE2 expression and subsequent SARS-CoV and NL63 susceptibility.
We thank Jian Shao and Paola Vermeer for technical advice and assistance. We thank Steve Brody for supplying the antibodies against foxj1, an adenoviral vector expressing foxj1, and helpful discussions. We thank Carmen Halabi and Curt Sigmund for providing the human ACE2 cDNA. We also acknowledge the support of the Cell Culture and Gene Transfer Vector Cores, partially supported by the Center for Gene Therapy for Cystic Fibrosis (NIH P30 DK-54759) and the Cystic Fibrosis Foundation, for preparing airway epithelial cultures and adenoviral vectors.
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