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Journal of Virology, November 2005, p. 13656-13666, Vol. 79, No. 21
0022-538X/05/$08.00+0 doi:10.1128/JVI.79.21.13656-13666.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Vaccine Research Institute of San Diego, California 92109,1 Department of Biochemistry and Molecular Biophysics, Commonwealth University, Richmond, Virginia,2 College of Veterinary Medicine, Western University, Pomona, California 91766,3 Division of Clinical Virology, Karolinska University Hospital, Karolinska Institute, Huddinge, Sweden4
Received 25 May 2005/ Accepted 10 August 2005
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-helical axis comprise the subunits of the particle. Dimer clustering of subunits produces spikes on the surface of the core shell which consist of radial bundles of four long
-helices. Previous studies have suggested that the immunodominant B-cell epitopes on HBcAg are localized around amino acids (aa) 76 to 82 (21, 24), which the structural studies showed formed an external loop that connected adjacent helices. Recent cryoelectron microscopy studies defined several B-cell epitopes localized within the external loop region as well as at least one B-cell epitope outside the loop region (1). The immunogenicity of heterologous insertions in the loop region of HBcAg suggested that the inherent immunogenicity of the native HBcAg B-cell epitopes could be successfully "transferred" by placement of heterologous epitopes in the same position as the native dominant epitopes (i.e., at the tip of the spikes). It appears that the spacing of the spikes on the HBcAg shell is optimal for binding and cross-linking the naïve B-cell membrane immunoglobulin G (Ig) receptor (11, 14). Therefore, B cells appear to be the primary antigen-presenting cell (APC) for HBcAg (10, 14). A number of pathogen-specific B-cell epitopes (i.e., epitopes for HBV, human immunodeficiency virus type 1 [HIV-1], foot-and-mouth disease virus, human rhinovirus type 2, bovine leukemia virus, feline leukemia virus, HCV, Plasmodium berghei, P. yoelii, P. falciparum, murine cytomegalovirus, poliovirus type 1, and simian immunodeficiency virus) have been inserted by recombinant methods into HBcAg as a method to increase immunogenicity (16, 18). These studies, conducted in a number of independent laboratories, have yielded significant success, including complete protection against foot-and-mouth disease virus (6), P. berghei (26), and P. yoelii (25); these latter three studies prove that neutralizing B-cell epitopes presented in the context of HBcAg can elicit protective immunity.
Although HBcAg is a highly immunogenic particulate antigen, the existing HBcAg-based platform technology is plagued with a number of biochemical and immunological problems that may limit its full potential as a vaccine carrier for the human population. The two main limitations of the current HBcAg platform technology can best be described as the "preexisting immunity" problem and the "assembly" problem. Because HBcAg is derived from a human pathogen, preexisting anti-HBc antibodies are present in individuals previously exposed to HBV infection which are likely to immune complex with an HBcAg-based vaccine and may adversely affect immunogenicity. Further, the anti-HBc antibodies elicited by an HBcAg-based vaccine will compromise the usefulness of the anti-HBc assay currently employed as a diagnostic for current or recent HBV infection. Most importantly, T-cell immune tolerance towards HBcAg is present in individuals chronically infected with HBV (400 million globally). Because the rodent hepadnaviruses are not human pathogens, the "preexisting immunity" problems may be overcome by using, for example, the woodchuck hepatitis virus core antigen (WHcAg) or the ground squirrel hepatitis core antigen (GScAg) as a vaccine platform. In fact, recent studies have demonstrated that the rodent core proteins can serve as competent vaccine carrier platforms and, importantly, are not significantly cross-reactive with the HBcAg at the antibody level and only partially cross-reactive at the level of Th cell recognition (2). The lack of significant immune cross-reactivity between the rodent hepatitis core proteins and HBcAg suggests that their use as vaccine platforms will circumvent the "preexisting immunity" problems. Therefore, we have chosen the rodent hepadnavirus core proteins and, more specifically, WHcAg as a candidate vaccine platform to address the second "assembly" problem.
It is commonly acknowledged among investigators who use HBcAg as a vaccine platform that less than 50% of selected foreign sequences can be successfully inserted into HBcAg (8). This high failure rate is believed to be due to destabilization of particle assembly caused by inserting foreign sequences. Many parameters can affect the expression level and/or the correct assembly of hybrid core particles. Recent analysis of biochemical-biophysical properties of several proposed heterologous inserts revealed that parameters such as length, high hydrophobicity, high ß-strand index, or large volume may impede the proper assembly-folding of chimeric core particles (9). The "assembly" problem is so severe that several groups working with HBcAg (8) or with other virus-like-particle (VLP) technologies (i.e., the L1 protein of the human papillomavirus) (3) have opted to chemically link the foreign epitopes to the wild-type (wt) VLPs as opposed to inserting the epitopes into the particles by recombinant methods. Chemical linkage of heterologous epitopes to VLPs may compromise a number of the advantages inherent in the recombinant hybrid particle technology. For example, chemical linkage will result in less than the 100% substitution achieved with the recombinant method, chemical linkage is not as reproducible, making manufacture difficult and more expensive, and in our experience, chemical linkage results in inferior immunogenicity compared to recombinant hybrid core particle results. Therefore, we have addressed the "assembly" problem by developing a so-called "combinatorial" technology using WHcAg as a new particulate carrier system. We demonstrate that (i) WHcAg appears to tolerate insertions of foreign epitopes at a greater number of positions (i.e., 17) than HBcAg both inside the external loop region (i.e., aa 76 to 82) and outside the loop region; (ii) the identification of an expanded number of insertion sites depended on developing 21 modifications to the C terminus that stabilize the various internal insertions and can be used in combination with the 17 insertion sites to ensure efficient hybrid WHcAg particle assembly; and (iii) the optimal combination of insertion site and stable C-terminal modification of WHcAg is also dependent on the sequence of the inserted epitope, and the charge of the insert sequence appears to be a very important variable.
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Creation of insertion sites. All insertions were accomplished by using the EcoRI-XhoI or SacI sites, with only the position of the insertion differing between constructs (Fig. 1A). Briefly, we have designed specific pairs of primers: one of the primers (forward or reverse) matches the exact sequence of the wt WHcAg gene and encompasses the restriction site RS1 (for example, SacI) and includes mismatches designed to encode two new restriction sites (EcoRI-XhoI); the other primer was homologous to the wt WHcAg gene and spanned the RS2 (for example, BseAI) restriction site. PCRs were performed using the forward-RS1-EcoRI-XhoI and the reverse RS2 as primers and the wt WHcAg plasmid as the template according to the procedure recommended by the manufacturer (La Roche). The resulting PCR product and the WHcAg wt plasmid were then digested by RS1-RS2 and ligated with T4 DNA ligase to create the new WHcAg with the corresponding insertion site. The EcoRI and XhoI restriction sites used in this study created the linkers Gly-Ile-Leu on the N terminus and Leu-Glu on the C terminus of the insert.
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FIG. 1. Schematic representation of the hybrid WHcAg constructs (see Materials and Methods).
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Screening and characterization of hybrid WHcAg particles. The transformed bacteria were grown overnight at low temperature (28°C) to avoid inclusion body formation before the expression of the protein was induced by addition of IPTG (isopropyl-ß-D-thiogalactopyranoside) (1 mM for 4 h). The bacteria were lysed in a lysozyme-salt solution containing protease inhibitors. The resulting supernatant was precipitated overnight in the cold with 10 to 50% ammonium sulfate. Bacterial lysates were then screened for levels of protein expression, hybrid WHcAg particle assembly, and epitope antigenicity. Briefly, lysates were sequentially screened in capture enzyme-linked immunosorbent assays (ELISAs) designed either to detect the WHcAg polypeptide by use of a monoclonal antibody (MAb) (2221; Institute for Immunology, Tokyo University, Japan) specific for a peptide epitope (aa 129 to 140) on WHcAg (anti-pWHc) as a marker of protein expression or to detect the WHcAg particle by use of an antibody specific for a conformational epitope on WHcAg (anti-nWHc) as a marker for assembly. This polyclonal BALB/c anti-nWHc antibody only binds particulate WHcAg, and even mild denaturation of WHcAg destroys anti-nWHc antibody binding (Fig. 2A). Insert-specific antibodies (not sensitive to reduction-denaturation) were used to assess the expression level and antigenicity of the various inserts (Fig. 2A). The capture antibody was peptide specific and noncompetitive with the detecting antibodies. The levels of core protein expression and assembly competence detected in the capture ELISAs were assigned relative values (units) based on comparison with anti-pWHc and anti-nWHc antibody binding to wt WHcAg (see Fig. 6): for example, a value of 5 = wt binding (i.e., maximum binding level); 4 = 5x less than wt binding; 3 = 25x less than wt binding; 2 = 125x less than wt binding; 1 = 625x less than wt binding; 0 = no binding. "+," "±," and "" correspond, respectively, to the relative scores of 5 to 3, 2 to 1, and 0. Based on relative expression level, assembly, and insert antigenicity detected in the lysates, optimal hybrid particle gene constructs were selected for further purification (Fig. 2B). The selected proteins were then purified through hydroxyapatite followed by gel filtration chromatography on Sepharose 4B columns as previously described (24). We have observed a 100% correlation between anti-nWHc antibody binding and the ability to purify over 50 hybrid WHcAg particles. A typical chromatograph profile is shown in Fig. 3A, demonstrating that the native or hybrid WHcAg particle is recovered from the second peak (arrow). Following this purification, each newly purified particle is then electrophoresed on a 1% agarose gel and on a 15% Tris-glycine gel under reducing (ß-mercaptoethanol) and denaturing (sodium dodecyl sulfate) conditions to confirm the particulate structure (Fig. 3B) and the expected apparent molecular weight of its constitutive monomer (Fig. 3C), respectively. Finally, the purified particles are reanalyzed in the same capture ELISAs used to determine particulate structure and level of protein expression and the antigenicity of the insert in the lysate (Fig. 3D).
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FIG. 2. (A) Capture ELISAs were designed to detect either WHcAg polypeptide as a marker for expression or WHcAg particles as a marker for assembly in E. coli lysates. An MAb specific for a peptidic epitope on WHcAg is used as the detecting antibody to determine relative expression levels (anti-pWHc; bottom panel). A polyclonal antibody that recognizes only assembled particles (anti-nWHc) is used to determine relative assembly competence (top panel). The capture antibody is a noncompeting MAb specific for a peptidic epitope on WHcAg. Purified malaria-WHcAg hybrid particles were treated with the indicated concentrations of a reducing-denaturing buffer and analyzed in anti-pWHc and anti-nWHc capture ELISAs. A malaria M epitope-specific MAb (2A10) was used to detect the malaria repeat epitope, which was not sensitive to reduction-denaturation. (B) A bacterial lysate of a hybrid M-WHcAg particle was tested in capture ELISAs used to detect assembled particles (anti-nWHc) and levels of protein expression (anti-pWHc) and antigenicity (anti-insert; MAb 2A10). Antibody binding at the indicated dilution is expressed as optical density at 492 nm (OD492).
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FIG. 6. A list of M2-WHcAg or M2()-WHcAg hybrid constructs expressed in E. coli and analyzed by capture ELISAs for relative expression level and assembly competence. Lysates were sequentially screened with a MAb that preferentially recognizes denatured WHcAg and another antibody that only recognizes assembled WHcAg particles (see Fig. 2) and given scores (see Materials and Methods) relative to antibody binding to wt WHcAg.
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FIG. 3. (A) Typical gel filtration profile obtained after hydroxyapatite followed by Sepharose CL4B chromatography of hybrid WHcAg particles. The first peak represents the void volume, the hybrid WHcAg is recovered from the second peak (arrow), and the third peak corresponds to aggregates of dimers-monomers of hybrid WHcAg. (B) Migration of exemplar hybrid WHcAg particles through a 1% agarose gel. Note that the migration pattern differs depending on the C terminus, the insert position, and the epitope used. If particulate, the hybrid or wt WHcAg particles should migrate as a discrete band in native agarose (1%) gel electrophoresis. (C) Migration pattern through 15% Tris-glycine gel under denaturing (sodium dodecyl sulfate) and reducing (ß-mercaptoethanol) conditions of exemplar hybrid WHcAg particles. The expected size of the monomer of each hybrid WHcAg particle corresponds to the band of strongest intensity and is generally between 20 and 25 kDa, depending on the length of the hybrid WHcAg polypeptide. For epitope abbreviations, see Table 1. (D) Hybrid WHcAg particles tested in capture ELISAs to detect assembled particles (anti-nWHc), level of protein (anti-pWHc), and antigenicity level (anti-insert; MAb14C2) after purification as described in Materials and Methods. The results obtained with an influenza A virus M2 hybrid WHcAg particle are shown.
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Immunization of mice. Groups of three to five female mice (either bred at the Vaccine Research Institute of San Diego, CA or obtained from Jackson Laboratories, Bar Harbor, ME) of various strains and approximately 6 to 8 weeks old were immunized intraperitoneally. Hybrid WHcAg particles (20 µg, primary; 10 µg, boost) were emulsified in incomplete Freund's adjuvant (IFA). Mice were bled preimmunization and at various times after primary and booster immunizations for anti-insert and anti-WHc antibody determinations. Anti-WHc or anti-insert antibodies were measured in pooled, murine sera by indirect solid-phase ELISA using solid-phase wt WHcAg (50 ng/well) or insert peptide (0.5 µg/well), and goat anti-mouse IgG (or IgG isotype-specific) antibodies were used as the secondary antibody. The data were expressed as the antibody titer representing the highest dilution yielding three times the optical density of the preimmunization sera. Synthetic peptides were synthesized by the simultaneous peptide synthesis method as previously described (22).
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FIG. 4. WHcAg accommodates the insertion of foreign epitopes at many positions. Insertion sites for foreign epitopes are indicated. Tolerant (+), intermediate (+/), and nontolerant () insertion sites are indicated. Determinations of tolerance are based on relative scores (see Material and Methods). The C-terminus modifications tested were either 150C or HyW, HyW2, C-Long, 2RC, or 3RC.
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TABLE 1. Listing of model epitopes useda
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FIG. 5. List of amino acid sequences of the wt and the 21 modified C termini of WHcAg. (Note that "188," as cited in the text, corresponds to the wild-type sequence).
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TABLE 2. Effect of C-terminal modification on hybrid particle assembly
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TABLE 3. Effect of insert position on hybrid particle assembly
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TABLE 4. Optimal combination of insert position and C terminus
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Importance of insert charge on hybrid WHcAg assembly.
In addition to the presence of cysteines, other characteristics of the insert sequence may affect hybrid WHcAg assembly. For example, during the development of WHcAg combinatorial technology it became apparent that the presence of a number of highly basic amino acids (especially K, R, and H) in candidate insert epitopes correlated negatively with the assembly of hybrid WHcAg particles. Table 5 represents a list of epitope sequences with the indicated isoelectric points (pI) and the effect on assembly of insertion of the sequences into the loop region of WHcAg. It appears from this survey that positively charged inserts (high pI) may adversely affect assembly of hybrid WHcAg particles. The pI of the wild-type WHcAg loop region (positions 76 to 82) is approximately 6.14. Because the wild-type WHcAg loop region (positions 76 to 82) is acidic, it was reasonable to predict that epitope inserts more positively charged than the wild-type sequence may have adverse effects on dimer formation (i.e., the particle subunit) and/or particle assembly. To more directly test the importance of insert epitope charge on hybrid particle assembly, several epitopes with pI values of 7 or greater, which did not permit assembly of hybrid WHcAg particles, were modified to contain the acidic amino acid glutamic acid (E) or were bracketed by glutamic acid residues. The ability of glutamic acid residues added as substitutions or bracketed around the inserted epitope to rescue hybrid core particle assembly was tested. As shown in Table 6, in all cases the addition of glutamic acid residues rescued particle assembly on WHcAg, HBcAg, and GScAg platforms. To address the specificity of the added amino acid, various amino acids were used to "bracket" a single basic (i.e., pI = 8.74) epitope sequence (OMP-2). As shown in Table 7, only amino acids that significantly lowered the insert pI [i.e., glutamic acid (E) and aspartic acid (D)] allowed hybrid WHcAg particle assembly. Therefore, in the case of five different epitope inserts which were positively charged (pI
7) and did not permit hybrid particle assembly on the WHcAg, HBcAg, or GScAg platforms, particle assembly could be rescued by the addition of glutamic acid or aspartic acid around the insert.
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TABLE 5. Positively-charged inserts (high pI) can adversely effect assembly of hybrid WHcAg particles
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TABLE 6. Addition of acidic substitutions or linker sequences can neutralize the destabilizing effect of positively charged inserts (high pI) and rescue hybrid-core particle assembly on the WHcAg, HBcAg, and GScAg platformsa
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TABLE 7. Only acidic amino acids can rescue assembly of hybrid core particles containing a positively charged inserta
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FIG. 7. The effect of the position of the inserted epitope (NANP)n on the immunogenicity of the malaria-WHcAg hybrid particle. The hybrid particles are identical except for the position of the insert: the NH2- or COOH-terminal insertion or the internal insertion at aa 78 or 74. Groups of four mice were primed with 20 µg of the indicated particles in IFA. Sera were collected, pooled, and analyzed for the presence of IgG anti-NANP antibody by ELISA. Anti-NANP antibody titers are expressed as the reciprocal of serum dilution that yields three times the OD492 value of preimmunization sera.
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FIG. 8. The effect on immunogenicity of modifying the C termini of hybrid M-WHcAg particles. Hybrid M-WHcAg particles containing the same M insert sequence inserted at the same position (position 74) but with various C termini were used to immunize mice. Groups of four mice were immunized with a single dose of 20 µg of the hybrid particles in IFA. Sera were collected, pooled, and analyzed by ELISA for the presence of IgG anti-NANP antibody.
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The limited number of insertion sites and C-terminal modifications described for the HBcAg-based VLP technology may explain the fact that less than 50% of B-cell epitopes are successfully accommodated by the HBcAg platform (8). In contrast, the combined libraries of insertion sites and modified C termini we have accumulated for WHcAg have allowed us to be successful in attempts to insert 24 (92.3%) of 26 sequences. It is notable that the effect of the combination of insertion site modification and C-terminal modification on WHcAg is also dependent on the sequence of the inserted epitope. Therefore, three variables must be considered in designing a hybrid WHcAg particle: the insert position, the C-terminal sequence, and the epitope sequence. Because we have developed a rapid screening method to determine expression and assembly of hybrid core particles at the early bacterial lysate step, a combinatorial approach involving "shuffling" of the insert position and the C-terminal modification for each epitope of interest is feasible. But it is important to note that for eight model heterologous epitopes, eight different combinations of C terminus plus insert position were required (Table 4). This indicates that no one "universal" WHcAg platform will suffice for all heterologous epitopes and that a combinatorial approach is necessary for the widest possible application of this technology.
Because the inserted epitope sequence can affect hybrid core assembly or stability, it is useful to perform mutational analysis of the epitope to map the necessary antibody contact residues. Nonessential residues can be subsequently replaced with less-disruptive residues as needed. This strategy is also useful for identifying analogs with improved antibody binding. Karpenko et al. have examined the physical and chemical properties of epitope inserts that may affect the folding and assembly of chimeric proteins into HBcAg hybrid particles (9). This study defined three parameters of the epitope insert that prevented self-assembly of hybrid HBcAg particles, specifically, high epitope hydrophobicity, large epitope volume, and a high ß-strand index for the epitope. We report herein that the epitope charge may be a more important factor to be considered when constructing hybrid core platforms. If possible, a negatively charged epitope should be selected; however, when this is not possible, a positively charged epitope can be modified to include acidic amino acid substitutions and/or be bracketed by acidic residues to permit efficient hybrid particle assembly. The addition of acidic amino acids can be integrated directly into the platform or added to the inserted epitope. This modification may be extrapolated beyond hepadnavirus core hybrid particles. Similarly to the hepadnavirus core protein results, preferred insertion sites on many VLPs are immunodominant exposed loop structures that are accessible for antibody recognition and that may be less likely to compromise the structural integrity of the particle, in contrast to insertions into
-helical or ß-sheet regions (4, 5, 7, 27). The finding that insertion of positively charged epitopes into the exposed loop region of HBcAg, WHcAg, and GScAg disrupts assembly of hybrid particles may not to be unique to hepadnavirus core antigen VLPs. Interestingly, insertion of a highly acidic epitope (the HBcAg sequence at positions 78 to 83) into each of six distinct surface loop domains of HPV16-L1 VLPs did not disrupt hybrid particle assembly (20). The use of acidic amino acids to neutralize a "cloud" of positive charge around an inserted epitope may represent a generally useful strategy for a variety of VLP vaccine platforms. In a previous study, an adequate balance between positive and negative charge densities of the nucleic acid and protein complex in the interior of full-length HBcAg was suggested to contribute to a more stable capsid structure (12).
There are also practical considerations for implementing WHcAg-based combinatorial technology described in this report for real-world vaccine design. Because the combinatorial technology has the potential to produce 374 gene constructs or hybrid particles (i.e., 17 insertion sites x 22 C termini) for each designated B-cell epitope, it is essential to be able to select optimal constructs early in the production process. Our approach has been to stratify the production of constructs in groups of 10 (first tier, second tier, etc.). The 10 first-tier constructs include three insertion sites within the loop (i.e., positions 78, 81, and 82) and two insertion sites outside the loop (i.e., positions 74 and 83) combined with two different C termini (HyW2 and C-Long). The 10 constructs are transformed into E. coli and grown in low-volume fermentation culture (0.5 liter). Bacterial lysates are then screened for relative levels of core protein expression, hybrid WHcAg particle assembly, and insert epitope antigenicity by use of the capture ELISAs as described above. The capture ELISAs performed with bacterial lysates reliably and reproducibly predicted the constructs that resulted in high yields of high-quality hybrid WHcAg particles after the purification process. This is a crucial and useful selection step because it eliminates many suboptimal constructs very early in the development pathway. When optimal constructs are not identified, the process is repeated with the next 10 constructs and so forth until optimal constructs are identified.
In summary, the development of a combinatorial technology, together with the use of WHcAg as a platform, has significantly advanced the applicability of hepadnavirus core-based VLP vaccine design.
This work was supported by National Institutes of Health grants 5 R01 AI 49730 and 5 R01 AI 20720 and grants from the Swedish Cancer Foundation and Swedish Science Council.
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