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Journal of Virology, August 2005, p. 9381-9387, Vol. 79, No. 15
0022-538X/05/$08.00+0 doi:10.1128/JVI.79.15.9381-9387.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
N. E. Olszewski,2 and
J. A. García1*
Department of Plant Molecular Genetics, Centro Nacional de Biotecnología (CSIC), Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain,1 Department of Plant Biology and Plant Molecular Genetics Institute, University of Minnesota, Saint Paul, Minnesota 551082
Received 1 March 2005/ Accepted 23 April 2005
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The enzymes responsible for O-GlcNAc addition (O-GlcNActransferases [OGTs]) are highly conserved in plants and animals (33). OGT enzymes have an N-terminal tetratricopeptide repeat domain and a C-terminal catalytic domain. While animals have one OGT, Arabidopsis thaliana has two: Secret Agent (SEC) and SPINDLY (SPY) (9, 29). Genetic experiments have demonstrated that SEC and SPY have at least partly overlapping functions (9), but so far, there is very little information on their target proteins.
O-GlcNAc modifications have been found in some structural proteins from different animal viruses such as the cytomegalovirus basic phosphoprotein (8), the adenovirus fiber protein (20), and the baculovirus gp41 protein (34), as well as in the nonstructural rotavirus NS26 protein (6). The biological relevance of these modifications is yet unknown.
Plum pox virus (PPV) is a potyvirus that in nature infects fruit trees of the Prunus genus but that is also able to infect experimentally different herbaceous hosts (18). The messenger-polarity single-stranded genomic RNA of potyviruses is translated into a large polyprotein that is further processed by three virus-encoded proteases (21, 22). The potyviral genome is encapsidated in flexuous rod particles made up of
2,000 units of a single type of capsid protein (CP) located at the C end of the viral polyprotein (25). The N- and C-terminal regions of the potyviral CP are surface exposed and can be released from the virus particles by mild proteolysis with trypsin (24). The CP of PPV has been shown to be modified by O-GlcNAcylation and phosphorylation. O-GlcNAc-modified residues were mapped to the N-terminal portion of the protein (3). In this paper, we have identified SEC as the plant OGT involved in these modifications and investigated the relevance of SEC function for virus infection.
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Although PPV accumulation appears to be quite similar in N. clevelandii, N. benthamiana, and Arabidopsis, the protocol previously described for PPV purification from leaves of N. clevelandii (16) was not suitable for purification from N. benthamiana or Arabidopsis, probably because of virus aggregation (data not shown). Thus, the original protocol was slightly modified for these hosts. In brief, 10 g of N. benthamiana- or Arabidopsis-infected leaves collected 3 weeks postinoculation was homogenized with 50 ml (Arabidopsis) or 20 ml (N. benthamiana) of 0.18 M McIlvain's citric acid-phosphate buffer, pH 7, containing 0.2% thioglycolic acid, 0.01 M sodium diethyldithiocarbamate, 0.5 M urea, and 3 mM EDTA first for 5 min with a mortar and pestle and then for 10 min with a Waring blender at low speed. Next, 50 ml (Arabidopsis) or 10 ml (N. benthamiana) of cold chloroform was added to the mixture and shaken in the Waring blender for another 5 min. The homogenate was centrifuged for 11 min at 5,000 x g, and the supernatant was centrifuged for 2 h at 82,500 x g. The pellet was resuspended in 3 ml (Arabidopsis) or 4 ml (N. benthamiana) of 10 mM McIlvain's citric acid-phosphate buffer, pH 7, containing 1 M urea and 0.2% ß-mercaptoethanol for 2 h and centrifuged for 10 min (Arabidopsis) or 5 min (N. benthamiana) at 1,500 x g. The supernatant was centrifuged for 1.5 h at 57,000 x g (Arabidopsis) or 82,000 x g (N. benthamiana). The resulting pellet was resuspended for 2 h in 0.5 ml (Arabidopsis) or 0.6 ml (N. benthamiana) of 0.1 M sodium borate buffer, pH 8.2, containing 10 mM EDTA, clarified by centrifugation for 5 min at 1,200 x g (Arabidopsis) or 1,500 x g (N. benthamiana), layered over a 3-ml cushion of 20% sucrose in the same buffer, and centrifuged at 72,000 x g for 2 h. The pellet was resuspended in 50 µl (Arabidopsis) or 100 µl (N. benthamiana) of 5 mM sodium borate buffer, pH 8.2, and clarified by centrifugation for 10 min at 4,800 x g (Arabidopsis) or 7,400 x g (N. benthamiana). All the purification steps were carried out at 4°C, and the purified virus was stored at 20°C.
Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) analysis of PPV CP digested with trypsin. Approximately 10 µg of purified PPV virions was digested with 2 ng of modified porcine trypsin (Promega) in a buffer containing 25 mM ammonium carbonate, pH 8, in a reaction volume of 10 µl. Digestion proceeded at 37°C for 20 min, and then it was rapidly stopped by adding 1 µl of 0.5% trifluoroacetic acid. Reaction products were desalted with a Zip-Tip reverse-phase C18 column (Millipore) and eluted in 5 µl of 70% aqueous acetonitrile and 0.1% trifluoroacetic acid.
About 0.4 µl of matrix solution (5 g/liter 2,5-dihidroxibenzoic acid in 33% aqueous acetonitrile and 0.1% trifluoroacetic acid) was deposited onto a 400-µm AnchorChip MALDI target (Bruker Daltonics, Bremen, Germany) and allowed to dry at room temperature. Then, 0.4 µl of the tryptic peptide mixture was added and again allowed to dry at room temperature. Peptide mass fingerprinting spectra were acquired with a MALDI-TOF Bruker Reflex IV mass spectrometer (Bruker Daltonics) equipped with a nitrogen laser (337 nm). Analyses were performed in reflector positive ion mode, accumulating 120 shots, with 400 ns of pulsed ion delayed extraction and an acceleration voltage of 20 kV and 1,600 V in the reflector detector. The mass spectra were externally calibrated using a mixture of peptide standards (angiotensin II, substance P, bombesin, somatostatine 28, and cytochrome C).
Processing of the spectra and data analysis were performed with Bruker Daltonics XTOF 5.1.1 and Biotools 2.1 software.
Assessment of spread and accumulation of PPV. Spreading of PPV-NK-GFP was assessed by visualizing green fluorescent protein (GFP) fluorescence under a Leica MZ FLIII fluorescence microscope with excitation and barrier filters of 480/40 nm and 510 nm, respectively. PPV accumulation was quantified by double-antibody sandwich indirect enzyme-linked immunosorbent assay (ELISA) using the REALISA kit (C. C. Durviz, S.L.). The samples were prepared by grinding the infected leaves with a mortar and pestle in 5 mM sodium phosphate buffer, pH 7.2 (2 ml/g), and storing them frozen at 20°C. A standard curve was obtained with different amounts of purified PPV virions diluted in the extract of healthy plants. The enzymatic reaction was developed with the Sigma FAST p-nitrophenyl phosphate tablet set system (Sigma), and the optical density at 405 nm of the reaction product was measured in a Titertek Multiskan MCC/340 (Labsystems) spectrophotometer. Statistical analysis of the data was carried out with PRISM 4 software (GraphPad).
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FIG. 1. Localization of the capsid protein coding sequence in the genome of PPV-NK-GFP. The different PPV protein products are shown in the box representing the PPV polyprotein. Dark gray and black boxes represent the N- and C-terminal regions and the core region, respectively, of the PPV CP. The location of the introduced GFP open reading frame is indicated above the map. The sequence of the N-terminal tryptic peptide from amino acids 1 through 39 is underlined.
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FIG. 2. (A to F) MALDI-TOF analysis of trypsin-digested PPV virions purified from the plants indicated in each panel. The mass/charge ratio (m/z, in Daltons) assigned to peaks that can derive from the peptide from amino acids 1 through 39, as well as their suggested modifications, are indicated. O-GlcNAc, O-GlcNAc modification; PHOS, phosphorylation; AC, acetylation; a.i., arbitrary intensity; wt, wild type.
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In order to investigate the possible role of plant OGTs in the O-GlcNAcylation of PPV CP and in virus infection, sec-1, sec-2, and spy-3 mutant plants were inoculated with PPV-NK-GFP, a recombinant PPV expressing the GFP, which allows an easier monitoring of the infection (5). PPV caused in wild-type Col-0 and WS mild symptoms consisting of leaf chlorosis, rosette gathering, curling of cauline leaves, and shortening of the inflorescence stems (data not shown). Similar symptoms were observed in the three mutant plants inoculated with PPV-NK-GFP, especially late in the infection. Although nearly 100% of the inoculated plants became infected, examination of GFP localization in the leaves detected differences in the pattern of infection between the different genotypes (Fig. 3). Radiation of the infection from the major veins and the extent of infection of the lamina were reduced in both sec alleles relative to the corresponding wild type. At 12 days postinoculation (dpi), a similar number of leaves from spy-3 and wild-type plants were infected (Fig. 4) but the percentage of sec-1 and sec-2 plants with detectable GFP expression was slightly, but reproducibly, reduced. The sec-1 and sec-2 alleles had a larger effect on the spread of an infection within a leaf. Large GFP fluorescence areas were observed in a smaller proportion of leaves from sec-1 and sec-2 plants than in wild-type or spy-3 plants (Fig. 3 and 4). The differences in the extent of virus spread among the different genotypes had decreased by 19 dpi (Fig. 3 and 4).
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FIG. 3. PPV spreading in mutant and wild-type (wt) Arabidopsis plants. Plants were inoculated with PPV-NK-GFP and observed at different times postinoculation under a fluorescence microscope. A ruler with minor divisions in mm is shown beside each picture.
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FIG. 4. Level of PPV infection in mutant and wild-type (wt) Arabidopsis plants. Four or five PPV-NK-GFP-infected plants of each Arabidopsis type were collected at 12 dpi and 19 dpi. Infection was assessed in all leaves of each plant by monitoring GFP expression with a fluorescence microscope. Leaves were classified as heavily infected when virus infection occupied more than one-fourth of the leaf lamina or more than half of the leaf vasculature.
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FIG. 5. PPV accumulation in infected leaves of mutant and wild-type (wt) Arabidopsis plants. Virus amount was determined by ELISA in two pools of caulinar and two pools of rosette systemically infected leaves from five (Col-0 wt, sec-2, and spy-3) or four (WS wt and sec-1) PPV-NK-GFP-inoculated plants collected at 12 dpi (between 8 and 36 caulinar and between 15 and 28 rosette-infected leaves) and 19 dpi (between 15 and 35 caulinar and between 6 and 21 rosette-infected leaves). The graphs show the average values with their standard deviations. Differences between sec-2 and Col-0 wt at 12 dpi and between sec-1 and WS wt at 12 and 19 dpi were statistically significant (P values of 0.04, 0.01, and 0.01). Differences between sec-2 and Col-0 wt at 19 dpi and between spy-3 and Col-0 wt at 12 and 19 dpi were not statistically significant (P values of 0.5, 0.82, and 0.53).
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TABLE 1. m/z of MALDI-TOF signals that could correspond to modified forms of the peptide spanning amino acids 1 through 39 from PPV CPa
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Very little is known of the OGT targets in plant cells. O-glycosylation with the terminal GlcNAc modification of several nuclear pore complex proteins of tobacco, including a protein that shows sequence similarity to bacterial aldose-1-epimerases, has been described previously (11), but the enzyme responsible for these modifications has not been identified. We have previously reported that the CP of a plant virus, PPV, was O-GlcNAc modified in N. clevelandii (3); now, we show that this modification is not specific for this host, since it takes place in a similar way in two other plant species, N. benthamiana and Arabidopsis (Fig. 2). More important, the MALDI-TOF analysis of PPV virions purified from sec and spy mutants indicates that SEC protein is the OGT responsible for the O-GlcNAc modification of the N-terminal region of PPV CP and that neither SPY nor other plant proteins is able to glycosylate this sequence (Fig. 2). However, we cannot rule out the possibility that SPY could be involved in the O-GlcNAc modification of other regions of PPV CP or other PPV proteins. These results support the hypothesis that SEC and SPY have partial functional independence. Whereas O-GlcNAc modification of the N-terminal region of PPV CP, like that of animal proteins, adds single sugar monomers (3; J. J. Pérez, S. Juárez, and J. A. García, unpublished results), the size of sugar chains of the glycosylated nuclear pore proteins of tobacco corresponds to more than five monosaccharides (10), suggesting that different enzymes could be involved in each of these modifications. Having in mind that SPY is less similar to mammalian OGTs than SEC, it is tempting to speculate that SPY could be involved in the second type of modification, which would be specific to plants.
The ability of PPV to infect sec-1 and sec-2 mutants (Fig. 3) demonstrates that O-GlcNAc modification by SEC OGT is not essential for PPV viability in Arabidopsis. However, the efficiency of PPV infection is markedly lower in these mutants than in the spy-3 mutant or in wild-type plants (Fig. 4 and 5), indicating that SEC activity plays an important role in infection. O-GlcNAc modifications at the segment from amino acids 1 through 39 of PPV CP are not essential, since deletions or substitutions that remove all Thr and Ser residues of this region have no perceptible effects on PPV infection in N. clevelandii (3, 4). Therefore, O-GlcNAc modification of other portions of PPV CP or other PPV proteins by SEC may play a role in the infection process. The present data do not allow us to discriminate whether some O-GlcNAc modifications are more important than others or the overall level of O-GlcNAcylation is the relevant factor. Moreover, we cannot rule out the possibility that the effect of sec mutation on PPV infection might be an indirect result of the action of SEC on a host protein. It is also important to point out that, although O-GlcNAc modification by SEC is not essential for the PPV infection of Arabidopsis, the possibility exists that O-GlcNAcylation plays a more important role in some plants (for instance, in the PPV natural woody hosts) than in others.
The role of O-GlcNAc modification in PPV infection is still an open question. It is well known that in mammals, O-GlcNAcylation and phosphorylation collaborate in the regulation of macromolecular interactions that control the activity of many cellular processes (26). PPV CP has been shown to contain phosphoserine and phosphothreonine residues (3). Although MALDI-TOF does not allow a precise analysis of protein phosphorylation, the MALDI-TOF spectra of PPV CP subjected to trypsin digestion showed signals that could correspond with phosphorylated peptides (Fig. 2 and Table 1). As expected, the presence of these putative phosphorylated peptides was not affected by the sec or spy mutations. Both nonglycosylated and O-GlcNAc-modified peptides appeared to be phosphorylated, in agreement with the fact previously observed in mammalian organisms that, although O-GlcNAcylation and phosphorylation are reciprocal modifications, a single polypeptide can contain simultaneously phosphate and O-GlcNAc residues (2). These data suggest that the O-GlcNAcylation of PPV CP, like that of those mammalian systems, could function in coordination with phosphorylation.
The genomic RNA is a central player in the most critical processes of viral infection: translation, replication, encapsidation, and cell-to-cell and long-distance movement. Thus, it is likely that allocation of RNA molecules to each of these processes is highly regulated. Ivanov and colleagues have demonstrated that phosphorylation of the CP of the potyvirus potato virus A reduces its ability to bind RNA and have suggested that this modification might regulate the formation and/or stability of virions and other viral ribonucleoproteins (12, 13). It is tempting to speculate that CP O-GlcNAc modification could also contribute to this regulatory mechanism. The fact that the effect of the sec alleles on PPV infection appears to be more apparent at early times (Fig. 3 through 5) suggests that the regulation of RNA distribution could be required at the beginning of the infection, when there could be a limiting amount of RNA molecules. An alternative possibility is that O-GlcNAc residues modifying PPV CP could be playing a role in virion stability similar to that proposed for the galactose and fucose residues that are O-linked to the N-terminal NAcSer of the Potato virus X CP, which has been shown to affect the water-absorbing capacity of the viral particles (1). It is striking that plant RNA viruses have adopted different O-glycosylation systems to modify their CPs; it will be interesting in the future to determine whether the role of SEC is PPV specific or it also modifies the CPs of other potyviruses or of viruses of other families.
The results described in this report identify a novel target for antiviral action. We have demonstrated that the O-GlcNAc modification of PPV takes place in several plant hosts and that viral propagation is compromised by sec mutations that do not noticeably affect plant growth. This could contribute to control the propagation of the virus in field conditions.
This work was supported by grants BIO2001-1434 and BIO2004-02687 from the Spanish MEC, QLK2-CT-2002-01050 and SP22-CT-2004 from the European Union to J.A.G., MCB-0112826 from the National Science Foundation, and DE-FG01-04ER04-02 from the U.S. Department of Energy to N.E.O.
Present address: Centre for Protein Engineering, MRC Centre, Hills Road, CB2 2QH Cambridge, United Kingdom. ![]()
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