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Journal of Virology, August 2005, p. 10003-10012, Vol. 79, No. 15
0022-538X/05/$08.00+0 doi:10.1128/JVI.79.15.10003-10012.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Immunology, Emory University School of Medicine, Rollins Research Center, 1510 Clifton Road, Atlanta, Georgia 30322,1 National Key Laboratory Veterinary Biotechnology, Harbin Veterinary Research Institute, Harbin, People's Republic of China2
Received 20 January 2005/ Accepted 14 April 2005
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Since the advent of reverse genetics techniques with influenza viruses (33), a major area of research has involved the use of influenza viruses as vectors for the expression of foreign protein-antigenic regions for vaccine purposes. The strategies that have been utilized include the incorporation of additional genome segments into viruses, the use of bicistronic genes that contain internal ribosome entry sequences allowing for the translation of a second coding region, the use of gene segments encoding polyproteins containing embedded proteolytic self-cleavage sites for the generation of independent proteins, and the use of chimeric influenza virus proteins that have foreign protein sequences incorporated into their coding regions (15; for reviews, see references 14, 16, 40, and 42). More recently, the capacity to decipher influenza virus genome packaging signals has allowed for gene segment substitutions that allow for foreign protein expression (12, 47, 54).
Some of the approaches involving chimeric proteins have benefited from the structural promiscuity of particular regions of the HA and neuraminidase (NA) glycoproteins. The stalk regions of the NA can vary in length to a significant degree among natural isolates, and inserted foreign protein sequences of as many as 28 to 41 amino acids have been reported (5, 32). High-resolution structural information is available for the influenza virus HAs of prototype viruses representing H1, H3, H5, and H9 subtype viruses (13, 21, 22, 53, 57). Among these, the HA of A/Aichi/2/68 virus, an H3 subtype, has been the most well characterized and has provided one of the best model systems for the study of viral glycoproteins in general. For the Aichi HA, X-ray crystal structures have been determined for the polypeptide precursor (HA0), the cleaved form that exists on the surface of infectious viruses, the conformation that is adopted following the structural rearrangements required for membrane fusion, HA complexes with receptor analogs, and HA complexes with neutralizing antibodies (48). The HA contains several flexible loop domains in the well-characterized antigenic regions of the protein designated as sites A, B, C, D, and E, to which neutralizing antibodies are targeted (56). As these domains vary during the antigenic drift of viruses from year to year, they provide attractive targets as sites for the insertion of alternative sequences. Sites B and E have been utilized for epitope swap experiments among HAs of different subtypes and insertion of foreign peptides for immunity studies (16). However, the chimeric HA proteins that have been incorporated into infectious viruses have contained insertions of only 7 to 12 amino acids at sites B and E.
Sequence alignment of the HA subtypes shows that the N-terminal regions of HA1 can differ in length by as many as 15 residues (44), indicating that there may be structural flexibility in these regions and that the molecule may be able to accommodate extra polypeptide segments at the N terminus without interfering with essential HA functions. Hatziioannou and colleagues (24) used an H7 subtype HA to generate several different HA mutants with insertions between the HA signal peptide and ectodomain sequences at the HA1 N terminus. These chimeric proteins contained large polypeptide domains derived from epidermal growth factor, single-chain antibodies, and an immunoglobulin G (IgG) Fc-binding domain, and they ranged in size from 53 to 246 amino acids. They were also shown to incorporate into pseudotyped retroviruses. Haynes and Schnierle (25) made two epidermal growth factor-HA proteins with insertions in this domain bearing point mutations in the receptor region, and although these were shown to incorporate into retroviral particles, no fusion activity was detected. Despite the latter observation, these two studies indicated that it might be possible to insert reasonably large domains into functional HAs, incorporate them into infectious viruses, and utilize these for vaccine purposes.
One pathogen for which vaccine development has proven problematic is Bacillus anthracis, the causative agent of anthrax, a disease that can lead to high fatality rates in humans. Spores of this bacterium currently constitute one of the major potential threats for acts of bioterrorism and were employed as such in late 2001, when spores were mailed to various locations, including the Senate Office Building, through the U.S. Postal Service. These unresolved incidents caused five fatalities and resulted in the closure of several places of work. The vaccine that is currently utilized requires multiple injections over an 18-month period and therefore is not optimal should incidents of bioterrorism occur (11). For this reason, we initiated studies using the Bacillus anthracis protective antigen (PA) as a model protein for large-domain polypeptide insertions into the HA for functional analyses of such chimeric proteins and for determinations of the capacities of these to incorporate into influenza viruses and induce protective immune responses against both influenza and anthrax disease.
Anthrax disease is caused by a bacterial toxin which is composed of three subunits, i.e., the PA, lethal factor (LF), and edema factor (EF), but it is antibodies to domain 1' and domain 4 of the PA that mediate the neutralization of toxin activity and confer protection (10, 30, 34). The structure of PA (Fig. 1B) suggests that individual domains may be able to fold independently and that it may be possible to incorporate them into recombinant molecules as vaccine components. Therefore, we attempted to insert the PA domain 1' (90 amino acids) and domain 4 (140 amino acids) polypeptides into HA to generate functional chimeric proteins and infectious viruses for immunogenicity studies. The chimeric proteins were found to express on the cell surface and induce membrane fusion to levels that were indistinguishable from that of wild-type (WT) HA. Plasmids expressing these chimeric proteins were shown to induce immune responses in mice to a greater degree than plasmids that express the PA domains alone do, suggesting an adjuvant-like effect when PA polypeptides are presented as components of HA-PA chimeric proteins. Furthermore, the chimeric proteins were able to incorporate into infectious influenza virus particles using reverse genetics, which also produced specific immune responses against both PA and HA following the inoculation of mice. The viruses containing chimeric HAs replicated at levels approaching that of the WT virus, and the inserts were stably incorporated following several serial passages of the virus. This demonstrates that DNAs, expressed proteins, or recombinant influenza viruses may prove useful as immunogens for the prevention of anthrax and that recombinant viruses may be even more useful. The technological aspects of our studies may extend to other pathogens for which vaccine design has proven problematic.
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FIG. 1. (A) Structural depiction of the HA monomer showing the site of insertion of the PA domains. (B) The structure of PA indicating domain 1' (LEF) and domain 4 (RBD) subunits (45). (C) The schematic structure of the constructs used in this study. The proteins RBD and LEF were inserted after the HA signal peptide (SP) followed by a Gly-Gly-Gly-Gly-Ser linker to increase flexibility. NheI (encoding Ala-Ser) and PacI (encoding Leu-Ile-Asn) sites were inserted on the 5' and 3' ends of the inserted RBD sequences, so one extra T was added to avoid a frameshift mutation. TM, transmembrane domain; CT, cytoplasmic tail.
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Construction of plasmids. To make the chimeric LEF/HA and RBD/HA constructs, the Aichi/2/68 HA gene was used, and the B. anthracis domain 1' and domain 4 regions of the PA gene were constructed by single-chain oligonucleotide extension with codons optimized for mammalian usage (23). Recombinant PCR was performed with different primers (primer sequences are available upon request). The full-length WT Aichi HA gene was cloned into pRB21 (2) for protein expression and functional studies, and sequences of the entire coding regions were verified. The sequence encoding the receptor binding domain (RBD) of PA and the lethal factor and edema factor binding domain (LEF) were inserted between the 3' end of the HA signal peptide sequence and the nucleotide sequences encoding the N-terminal domain of the HA1 ectodomain by use of a strategy similar to that employed by Hatziioannou et al. (24). To enhance the possibilities that the inserted domains could fold as individual units, sequences encoding Gly-Gly-Gly-Gly-Ser linkers were inserted at the 3' flanks of the PA domains in the genome sense with the chimeric proteins. For convenience, NheI and PacI sites were introduced into 5'- and 3'-flanking areas of the RBD coding region when the RBD/HA construct was made. One extra T nucleotide was added after the PacI site to avoid causing a change in the reading frame. For the DNA immunization study, the open reading frames (ORFs) of the RBD, LEF, WT HA, RBD/HA, and LEF/HA proteins were cloned into plasmid vector pCAGGS (kindly provided by Y. Kawaoka) under the control of a chicken ß-actin promoter.
Expression and characterization of PA/HA chimeric proteins. Recombinant vaccinia viruses were generated by the method developed by Blasco and Moss (2). HA-expressing recombinant viruses were plaque purified twice prior to the generation of stock viruses utilized in experiments. Trypsin cleavage experiments for the analysis of protein expression were carried out as described in the work of Cross et al. (7). Cell surface expression, as well as conformational change assays, was also analyzed by enzyme-linked immunosorbent assay (ELISA) using vaccinia virus-infected HA-expressing HeLa cells as described previously (52). Heterokaryon formation assays were carried out using recombinant vaccinia virus-infected BHK21 cells as described previously by Steinhauer et al. (52).
Reverse genetics and analysis of mutants. The PA/HA chimeric genes were introduced into the RNA expression plasmid pPolI Aichi HA, and the gene segment sequences were verified in entirety. Infectious influenza viruses were then generated from plasmid cDNAs essentially as described by Neumann et al. (41). The viruses generated were of H3N1 composition, containing the Aichi HA and other gene segments derived from the A/WSN/33 virus. Human 293T cells were transfected with the 17 protein and RNA expression plasmids using either Mirus (Panvera) or Superfect (QIAGEN) transfection reagents following the suppliers' guidelines. At day 3 posttransfection, cell supernatants were plaque purified once and passaged on MDCK cells to generate primary stocks. MDCK cells were also utilized for titrating viruses.
Virus passage in MDCK cells and embryonated chicken eggs. The rescued viruses were plaque purified once in MDCK cells. For the serial passage studies, MDCK cells were infected at multiplicities of infection (MOI) of between 0.01 and 0.001. For experiments with embryonated chicken eggs, 0.2 ml of serial 10-fold dilutions of the viruses were injected into the allantoic cavities and, at 48 h after infection, the allantoic fluids were harvested. Following serial passage of the MDCK-grown viruses and egg-grown viruses, stocks were used to infect MDCK cells in 24-well plates at an MOI of 5. At 7 hours after infection, MDCK cells were treated either in the presence or in the absence of 5 µg/ml trypsin (L-1-tosylamide-2-phenylethyl chloromethyl ketone [TPCK]-treated; Sigma) for 5 min. The cell lysates were then analyzed by Western blotting using ECL technology (Amersham Biosciences) following sodium dodecyl sulfate-polyacrylamide gel electrophoresis separation of the proteins on 10% polyacrylamide gels. To confirm the genetic stability of the chimeric PA/HA gene sequences of the rescued viruses after serial passage in MDCK cells and embryonated chicken eggs, the viral RNAs were purified using a QIAamp Viral RNA Mini Kit (QIAGEN) following the manufacturer's instructions. Reverse transcription-PCR analyses were performed using a Stratagene kit following the manufacturer's manual, and PCR products were sequenced and confirmed.
Kinetics of virus replication. MDCK cells were infected with wild-type and recombinant viruses at MOI of 0.001. At the indicated times after infection, the supernatant of MDCK cells was harvested. After low-speed centrifugation to remove cells, the virus titers in the supernatant were titrated on the confluent MDCK cells.
DNA immunization.
Female BALB/c mice (6 to 8 weeks old) purchased from Jackson Labs were used in the animal experiments. The plasmids were amplified in Escherichia coli DH5
and purified with a QIAGEN Endo-Free Megaprep kit. The plasmids were then resuspended at 1 µg/µl in sterile phosphate-buffered saline and stored at 80°C until used for immunization. The mice (6 per group) were immunized with a total of 100 µg DNA per mouse by intramuscular injection with 50 µl DNA in separate sites in both side quadriceps, followed by boosting with the same dose of DNA at week 4, week 8, and week 12. All animal procedures were done in accordance with National Institutes of Health (NIH) guidelines for the care and use of laboratory animals. For ELISAs, mouse blood was collected by retro-orbital bleeding at 14 days after the fourth DNA immunization. Ninety-six-well plates were coated with purified bromelain-treated HA (BHA), purified His-tagged ORF RBD, and His-tagged ORF LEF (100 µl of 4 µg/ml in borate-buffered saline, pH 8.5) at 4°C overnight. After the plates were blocked in 2% BSA/PBST (phosphate-buffered saline, 0.1% Tween 20, 2% bovine serum albumin), 100 µl of serial dilutions of mouse serum were added to each well in duplicate and incubated at 37°C for 2 h. The plates were washed three times with 2% BSA/PBST and subsequently incubated in horseradish peroxidase-conjugated secondary antibody against mouse IgG for 2 h at 37°C. After a final wash, 50 µl of the substrate 3,3',5,5' tetramethylbenzidine (Sigma) in 20 mM citrate buffer, pH 4.5, with 0.03% H2O2 was added, followed by the addition of 50 µl of 0.1 N sulfuric acid to stop the reaction when color was developed. The data was quantified by spectroscopy at 450 nm.
Immunization with recombinant viruses. Female C57BL/6 mice (6 to 8 weeks old) purchased from Jackson Labs were used in the animal experiments. The mice (4 per group) were infected intranasally with WT, recombinant RBD/HA, or recombinant LEF/HA viruses at 5,000 PFU/mouse/30 µl. The mouse blood was collected by retro-orbital bleeding at 22 days after immunization. ELISA assays were done as described above.
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Protease analysis of chimeric proteins. During influenza infection of host cells, the HA is synthesized as a monomeric polypeptide of approximately 550 amino acids, depending on the virus strain. These polypeptides form trimers in the endoplasmic reticulum prior to transport through the Golgi apparatus and to the cell surface. The monomeric HA precursor (HA0) polypeptides must be cleaved into the disulfide-linked subunits HA1 and HA2 to activate membrane fusion potential and virus infectivity (26, 27). When the H3 subtype Aichi HAs utilized in our studies are expressed using recombinant vaccinia viruses, they are transported to the cell surface in the uncleaved HA0 form. Trypsin treatment of cell monolayers expressing such HAs cleaves the surface-expressed molecules into HA1 and HA2 and provides a useful assay for cell surface expression and for the capacity of the molecule to be cleaved and become competent for membrane fusion. In our initial trypsin cleavage experiments, WT and chimeric HAs were incubated either without trypsin or at a concentration of 5 µg/ml, an amount that is often used for HA0 cleavage analysis, and the migration patterns of the resulting polypeptides were determined by Western blot analysis (Fig. 2). The migration profiles of uncleaved HA0 proteins indicate that the chimeric proteins are larger than that of WT HA, as would be expected considering the size of the inserted segments. Upon trypsin cleavage, the apparent molecular weights of the HA2 subunits of RBD/HA and LEF/HA were indistinguishable from that of WT HA2. This is not surprising, as the inserted sequences were engineered at the N terminus of HA1, and HA2 is highly resistant to protease degradation. The RBD/HA chimeric protein displayed properties suggesting that the inserted domain is relatively stable to the action of the protease treatment required to cleave HA0, since the migration of a large proportion of cleaved HA1 was found to be slower than that of WT HA1. By contrast, the migration patterns of the HA1 polypeptide chains indicate that a majority of the inserted domain from the LEF/HA chimeric protein becomes degraded at 5 µg/ml trypsin and indicate that the postcleavage HA1 product is very similar to WT HA. The PA 1' domain contains 13 lysine and arginine residues (55), so it is possible that some of these potential cleavage sites are as accessible to trypsin cleavage as the HA1-HA2 cleavage site normally recognized by activating proteases.
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FIG. 2. Cell surface expression of WT, chimeric RBD/HA, and LEF/HA proteins. CV1 cells were infected with recombinant vaccinia viruses expressing the proteins, the cells were treated either in the absence () or presence (+) of 5 µg/ml TPCK trypsin, and the cell lysates were analyzed by Western blotting.
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FIG. 3. Western blot analysis showing the titration of trypsin concentrations required to cleave HA0 into HA1 and HA2 and their effects on inserted sequences.
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TABLE 1. Analysis of cell surface expression and HA conformation by ELISA
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TABLE 2. Determination of the pH of conformational change by ELISA
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FIG. 4. Polykaryon formation by BHK 21 cells expressing WT, chimeric RBD/HA, or LEF/HA at pH 7.0 and pH 5.0.
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FIG. 5. Growth kinetics of MDCK-grown and embryonated chicken egg-grown viruses following six passages. The MDCK cells were infected with viruses at an MOI of 0.001, and the supernatants of these cells were titrated on MDCK cells following incubations at the indicated time points.
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FIG. 6. (A) Expression of the chimeric proteins after one or six passages in MDCK cells. The analyses were done using MDCK-infected cells treated in the absence () or presence (+) of 5 µg/ml TPCK trypsin at 7 h after infection. (B) Expression of chimeric proteins after six passages in embryonated chicken eggs. The process is the same as that for panel A.
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TABLE 3. The virus titers and sequence changes of recombinant viruses
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FIG. 7. Induction of immune responses following DNA immunization of mice with plasmids expressing WT HA and the chimeric RBD/HA and LEF/HA proteins. The pooled sera from mice immunized with the different DNA constructs were collected 2 weeks after the fourth immunization and analyzed for antibodies specific for different proteins by ELISA. Antigens utilized were as follows: (A), bromelain-released HA ectodomains (BHA); (B), His-tagged RBD; (C), His-tagged LEF. The antibody concentrations were calculated according the standard curve for absorbance and the amount of mouse IgG. (D), RBD/HA-immunized mice; (E), LEF/HA-immunized mice. The pooled sera from mice immunized with the RBD/HA and LEF/HA constructs after the fourth immunization were used for Western blot analysis against whole PA (lanes 1), His-tagged RBD (lanes 2), and His-tagged LEF (lanes 3).
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FIG. 8. Induction of immune responses following the immunization of mice with WT and recombinant RBD/HA and LEF/HA viruses. The pooled sera from each group of mice immunized intranasally with 5,000 PFU per mouse were collected at day 22 postinfection and analyzed by ELISA for antibodies specific for different proteins. Antigens utilized were as follows: (A), BHA; (B), His-tagged LEF; (C), His-tagged RBD. The antibody concentrations were calculated according to the standard curve for absorbance and the amount of mouse IgG.
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There are several reasons to consider the potential advantages of influenza viruses as vectors for the development of vaccines against other pathogens. (i) The virus stimulates strong mucosal and systemic immune responses. (ii) The influenza vaccine is produced in large scale on an annual basis. (iii) The structures and functions of the HA and NA surface proteins are well characterized, and it has been shown that these proteins can be genetically manipulated without compromising their functions. (iv) Highly efficient reverse genetics systems have been developed for influenza. (v) Mice and ferrets provide well-characterized animal model systems for the analysis of immune responses to potential vaccine candidates involving influenza virus.
For these reasons, several approaches have been utilized to genetically modify influenza viruses for the expression of foreign epitopes. Among the many examples documented to date, these various strategies have involved the induction of immune responses in mice against human immunodeficiency virus 1 envelope protein antigenic regions (9, 17, 36, 37), simian immunodeficiency virus Gag protein sequences (38, 39), cytotoxic T lymphocyte epitopes from lymphocytic choriomeningitis virus (4) and herpes simplex virus 2 (1), an antigenic region of the outer membrane protein of Pseudomonas aeruginosa (49), and polypeptides from the malaria parasite Plasmodium yoelii (18, 28). However, the previous studies involving the influenza virus HA have involved only the insertion of small peptides into antigenic loop regions. The studies described here follow approaches used by Hatziioannou and colleagues (24), who showed that polypeptide domains as large as 246 amino acids can be added at the N terminus of the HA of A/Rostock/34 virus, an H7 subtype, and that such chimeric HAs can express at the cell surface and be incorporated into pseudotyped retroviruses. Our work shows that large fragments of the B. anthracis PA protein can also be incorporated into functional HA molecules as insertions at the N-terminal regions of H3 subtype HAs. The PA domains that we analyzed were the 1' domain responsible for binding to the LF and EF subunits of the toxin and domain 4, which is involved in the binding of the toxin to cell surface determinants. Chimeric HA proteins containing each of these domains were shown to express on the cell surface and mediate membrane fusion. Moreover, we were able to demonstrate that they can act as functional components of infectious influenza viruses with regard to virus infectivity and replication. They grow as well as viruses with WT HA in both MDCK cells and embryonated chicken eggs (Fig. 5). The PA sequences of the chimeric HAs of the recombinant viruses were stably maintained following six passages in MDCK cells or eggs, though several mutations were detected in the HA portions of these proteins (Table 3). The significance of the S107F and N246D mutations in the HA1 region is not known, but the L226P mutation is known to confer a high pH fusion phenotype, and other mutations that were detected, such as D132V, S113L, and M115I in the HA2 region, are very close in terms of molecular structure to high-pH fusion mutations that have been reported in previous studies (29, 51). The significance that can be attributed to the selection of high-pH fusion mutants when HA mutant viruses are generated using reverse genetics techniques and propagated is not known. Perhaps the various well-utilized laboratory strains with histories of passage in eggs can select for higher-pH fusion mutants when tissue-culture-based techniques involved in the reverse genetics process are utilized (29).
The currently utilized vaccine against anthrax is composed of a preparation of bacterial supernatant containing the PA protein (11) and requires multiple vaccinations over several months. Our DNA and virus vaccination experiments using mice show that immune responses to both the HA and the PA components of the chimeric proteins are generated. The mouse immunization experiments with recombinant viruses demonstrate that immune responses against both HA and PA domains can be elicited following a single inoculation with a low dose of virus. Furthermore, the immune responses to the PA components of the chimeric HA-PA proteins were greater than those detected for the domain 1' and domain 4 PA regions expressed on their own. This suggests that chimeric HAs may provide a useful tool for the expression of foreign protein domains for vaccine purposes. With the chimeric proteins described in this study, the expressed molecules were completely or partially degraded when HA1-HA2 fusion activation cleavage occurred, depending on conditions. This was also observed for the influenza viruses generated by reverse genetics. However, as DNA or subunit vaccine components or as live attenuated vaccine candidates, this might not be a negative factor. The degradation products of the PA domains may be capable of binding to major histocompatibility complex proteins and contributing to effective immune responses. As inactivated vaccine candidates, further modification of the inserted sequences and sites of insertion will be required, and these studies are being pursued.
With the approaches described here and other approaches involving influenza virus-based DNA, protein, or virus vaccines, the issue of preexisting immunity in vaccinees must be considered. This will require further study, but with our expanding structural knowledge of the 15 HA antigenic subtypes and the mechanisms of virus neutralization, it is not difficult to envisage strategies to circumvent the potential difficulties. We anticipate that there will be progress on these fronts and that it will be possible to utilize approaches such as those described here for the design of vaccines against a variety of pathogens.
This work was funded by NIH Public Health Service grants AI66870 and AI/EB53359 to D.A.S. and NIH grant 5U54AI057157 to R.A.
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