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Journal of Virology, May 2004, p. 4936-4942, Vol. 78, No. 9
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.9.4936-4942.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
School of Biochemistry and Microbiology,1 Institute of Cardiovascular Research, University of Leeds, Leeds, LS2 9JT United Kingdom2
Received 6 May 2003/ Accepted 8 January 2004
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AT-hook is capable of functioning as a trans-dominant mutant, leading to a reduction in virus production of approximately 50% compared to that for wild-type ORF 50. |
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Gene expression in HVS is modulated by the two major transcription-regulating genes carried on open reading frame (ORF) 50 and ORF 57 (20, 21, 27-29). The ORF 57 gene encodes a multifunctional protein capable of both transactivation and repression of viral gene expression at a posttranscriptional level (28, 29). Recent analysis has demonstrated that ORF 57 encodes a nucleocytoplasmic shuttle protein which mediates the nuclear export of late virus transcripts (8), whereas repression of gene expression is due to the presence of introns in target genes and may correlate with the ability of ORF 57 to redistribute splicing factors into distinct aggregations (28, 29).
The ORF 50 gene produces two transcripts, termed ORF 50a and b. The first is spliced, contains a single intron, and is detected at early times during the productive cycle, whereas the second is expressed later and is produced from a promoter within the second exon. The spliced transcript is fivefold more potent in activating the delayed-early (DE) ORF 6 and ORF 57 promoters. However, the function of the spliced transcript is unclear (20, 27, 28). Further analysis of the ORF 50 gene products has demonstrated that they activate transcription directly, following interactions with promoters containing a specific sequence motif. Deletion and gel retardation analyses have identified a consensus ORF 50 recognition sequence required for ORF 50 binding, CCN9GG, termed the ORF 50 response element (RE) (30). This RE has significant homology to the EBV Rta RE consensus sequence, GNCCN9GGNG. Guanine methylation studies have shown that the CCN9GG motif is essential for EBV Rta binding and suggest that Rta binds to adjacent major grooves of the DNA (11-13). Once bound to the recognition sequence, HVS ORF 50 recruits and interacts with the TATA binding protein (14) via a carboxy-terminal transactivation domain, which suggests that HVS ORF 50 recruits components of the TFIID complex, allowing the initiation of transcription by RNA polymerase II.
Furthermore, studies utilizing a human lung carcinoma cell line latently infected with HVS demonstrated that overexpression of the ORF 50a gene, under the control of the constitutively active cytomegalovirus immediate-early promoter, results in the production of infectious virions via the complete lytic cascade. This finding has implicated the ORF 50a gene product as the latent-lytic switch protein (9).
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FIG. 1. Amino acid sequence alignment of the consensus and ORF 50 AT hook motif.
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AT-hook. Sequencing of this construct demonstrated deletion of the putative DNA binding domain and confirmed the integrity of the PCR products (data not shown). Subsequently, the complete exon 2 of pUC50 and pUC50
AT-hook were PCR amplified by using the following primers in order to generate amino-terminal green fluorescent protein (GFP) fusion proteins of both wild-type and mutated ORF 50 proteins: primer E, 5'-CCG GAA TTC GAT GAT GTC CAA GTC AGA-3', and primer F, 5'-CGG GGT ACC CGG TCT TGT GCA GAT GTA GA-3'. Oligonucleotides E and F incorporated EcoRI and ApaI restriction sites, respectively. The PCR (5 min at 95°C; 30 cycles of 1 min at 95°C, 1 min at 53°C, and 3 min 30 secs at 68°C; and a final 10 min at 68°C) was performed using 1U of Pfx polymerase (Life Technologies). The PCR fragments were then cloned into the vector pEGFP (Clontech), previously digested with EcoRI and ApaI, to derive the vectors p50GFP and p50GFP
AT-hook, respectively. Sequencing of these constructs confirmed the integrity of the PCR products (data not shown).
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FIG. 2. (a) Diagrammatic representation of the cloning strategy employed to delete the ORF 50 AT hook. (b) Immunofluorescence and subcellular localization analysis of 293T cells transfected with pEGFP (I), p50GFP (II), or p50GFP AT-hook (III). (c) Western blot analysis using GFP antibody of cellular extracts from 293T cells pretransfected with pEGFP (I), p50GFP (II), or p50GFP AT-hook (III). (d) Effect of the wild-type and mutated ORF 50 gene products on the transactivation of DE promoters. 293T cells were cotransfected with 1 µg of pAWCAT2 or pORF57CAT1 in the presence of 1 µg of pEGFP, p50GFP, or p50GFP AT-hook. The error bars indicate the variations in the results of three replicate assays, each performed in duplicate. PSL, photo-stimulated luminescence.
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AT-hook produce stable protein products, immunofluorescence and Western blot analysis were performed. Initially, 293T monolayers were transfected with 2 µg of pEGFP, p50GFP, or p50GFP
AT-hook, using Lipofectamine 2000 (Life Technologies), and the subcellular localization of GFP was observed by fluorescence microscopy. Both p50GFP and p50GFP
AT-hook were shown to produce a stable protein product that localized within the nucleus, with a similar nuclear, speckled pattern distinct from that of pEGFP, which is consistent with previous results (14) (Fig. 2b). In addition, transfected cellular extracts were resolved on a sodium dodecyl sulfate-10% polyacrylamide gel and soaked for 10 min in transfer buffer (25 mM Tris, 192 mM glycine, 20%[vol/vol] methanol, 0.1% sodium dodecyl sulfate). The proteins were transferred to nitrocellulose membranes by electroblotting for 3 h at 250 mA. After being transferred, the membranes were soaked in phosphate-buffered saline (PBS) and blocked by preincubation with 2% [wt/vol] nonfat milk powder for 2 h at 37°C. The membranes were incubated for 2 h with a 1/1,000 dilution of the anti-GFP monoclonal antibody (Clontech), washed with PBS, and incubated for 1 h at 37°C with a 1/2,000 dilution of anti-mouse immunoglobulin conjugated with horseradish peroxidase (Dako) in blocking buffer. After five washes with PBS, the nitrocellulose membranes were developed by using enhanced chemiluminescence (Pierce) according to the manufacturer's directions. The results shown in Fig. 2c demonstrate that both p50GFP and p50GFP
AT-hook produce protein products of approximately 80 kDa, encompassing
50 kDa of the ORF 50 protein and
28 kDa of the GFP tag.
To determine whether the putative ORF 50 AT hook is required for the DNA transactivation capacity of ORF 50, reporter gene-based transient transfection assays were performed. 293T cells were transfected with 1 µg of either pEGFP, p50GFP, or p50GFP
AT-hook in the presence of 1 µg of pAWCAT2 (30) or pORF57CAT1 (28), using Lipofectamine 2000. These reporter constructs contained the chloramphenicol acetyltransferase (CAT) coding region under the control of the ORF 50-responsive ORF 6 and ORF 57 promoters, respectively (28, 30). Cells were harvested after 36 h and assayed for CAT activity by standard methods (10) (Fig. 2d). p50GFP was shown to transactivate the ORF 6 and ORF 57 promoters to levels previously reported. All CAT assays throughout this report were controlled to be in the linear range of enzymatic activity (28, 30). However, dramatically reduced CAT activity was observed when p50GFP
AT-hook was assessed for transactivation capability of the ORF 6 or ORF 57 promoters. The results demonstrated that deletion of the ORF 50 AT hook reduced CAT activity by 100% for the ORF 6 promoter and approximately 90% for the ORF 57 promoter. To confirm that the transfection efficiency of these experiments was normalized, immunofluorescence and Western blot analysis were performed as mentioned previously to assess the expression of p50GFP and p50GFP
AT-hook (data not shown). The results demonstrated that both constructs expressed at similar levels, suggesting that the putative ORF 50 AT hook situated between bp 72000 and 72030 is required for ORF 50-dependent transactivation of the DE ORF 6 and ORF 57 promoters.
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-32P]dATP. The radiolabeled oligonucleotides were incubated for 20 min with nuclear extracts of untransfected 293T cells or 293T cells transfected with pEGFP, p50GFP, or p50GFP
AT-hook by the method of Andrews and Faller (3). The binding reactions were performed in 20 µl of binding buffer (100 mM KCl, 20 mM HEPES [pH 7.3], 1% glycerol, 0.2 mM EDTA, 5 mM MgCl2, 4 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride) with 1 µg of poly(dI-dC) as an unspecific competitor. The protein-nucleic acid complexes were separated on a 5% polyacrylamide gel, run in 1% Tris-borate-EDTA buffer, and detected by autoradiography (Fig. 3). The results show the formation of a retarded complex with the p50GFP-transfected cell extracts. No other complex was identified in the mock, pEGFP, or p50GFP
AT-hook extracts, indicating that the ORF 50 AT hook, deleted in p50GFP
AT-hook, is required for ORF 50 binding to the RE.
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FIG. 3. Gel retardation analysis. The ORF 6 promoter oligonucleotides were incubated with cellular extracts prepared from untransfected 293T cells (I), pEGFP-transfected 293T cells (II), p50GFP-transfected 293T cells (III), or p50GFP AT-hook transfected cells (IV).
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FIG. 4. (a) Amino acid sequence alignment of the single site-directed mutations generated for characterization of the ORF 50 AT hook. (b) Reverse PCR primer sequences used in the generation of the single site-directed mutations.
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FIG. 5. Effect of the mutated ORF 50 AT hook gene products on transactivation. (a) 293T cells were cotransfected with 1 µg of pORF57CAT1 in the presence of 1 µg of each site-directed mutation sequence. The results are presented as a percentage of wild-type p50GFP CAT levels. The error bars indicate the variations in the results of three replicate assays, each performed in duplicate. (b) Western blot analysis using GFP antibody of cellular extracts from 293T cells pretransfected with pT402A (I), pR404A (II), pP406A (III), pR407A (IV), pG408A (V), pR409A (VI), and pR404-G408A (VII).
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AT-hook, using an integrin-targeting peptide combined with lipofectin (Invitrogen), as described previously (15). This reagent was used to enhance transfection efficiency in OMK cells. Cells were exposed to lipid-peptide-DNA complexes for 4 to 6 h in serum-free Dulbecco modified Eagle medium. At 24 h posttransfection, a similar percentage of approximately 50 to 60% of cells were expressing both p50GFP and p50GFP
AT-hook, indicating that there was no difference in transfection efficiency. The OMK cells were subsequently infected with HVS-GFP at a multiplicity of infection of 1 and incubated at 37°C for 5 days until destruction of the cell sheet had occurred. The supernatants were then harvested from each well, and the viral titers were measured by plaque assay (Fig. 6). The results demonstrated that the viral titer produced from untransfected cells and that from cells pretransfected with pEGFP were approximately the same. However, the virus titer from p50GFP pretransfected cells increased by approximately 30%. The virus titer from p50GFP
AT-hook pretransfected cells was reduced by approximately 50% compared to the titer from p50GFP pretransfected cells. We believe that the modest reduction by the trans-dominant mutation is due to the poor transfection efficiency of the OMK cells, as Western blot analysis demonstrated that there were similar levels of wild-type proteins and proteins encoded by the mutated ORF 50 (data not shown). However, the experiment does suggest that the ORF 50 AT hook mutation can act as a trans-dominant mutant to inhibit virus replication and thereby virus production.
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FIG. 6. The yield of infectious virus is reduced in OMK cells expressing p50GFP AT-hook. Untransfected OMK cells or cells pretransfected with EGFP, p50GFP, or p50GFP AT-hook were infected with HVS-GFP at an multiplicity of infection of 1. The supernatants were harvested 5 days postinfection, and viral titers were determined using plaque assays. The error bars indicate the variations in the results of three replicate assays, each performed in duplicate.
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We constructed a mutant with a deletion in this region (p50GFP
AT-hook), which was unable to transactivate the HVS ORF 6 and ORF 57 promoters. Moreover, gel retardation analysis demonstrated that this region was required for ORF 50 DNA binding to the ORF 50 RE. Single site-directed mutations within the ORF 50 DNA binding domain helped characterize specific amino acids that are important for ORF 50 transactivation. The majority of the single-point mutations had no effect on ORF 50 transactivation; however, mutation of the glycine residue at position 408 to alanine reduced ORF 50-mediated transactivation of the ORF 57 promoter by approximately 40%. Moreover, mutation of the basic residues in conjunction with the glycine at position 408 abolished the transactivation capability of ORF 50. This finding suggests that the intrinsic features of the ORF 50 AT hook are similar to those of mammalian AT hooks. Structural nuclear magnetic resonance studies have suggested that the glycine residue predisposes the dynamic configuration of the AT hook to produce optimal contact with the narrow minor groove of regions of AT-rich DNA and that the flanking basic residues help stabilize the protein-DNA interaction (22, 23).
Furthermore, viral lytic replication was inhibited by approximately 50% in cells constitutively expressing p50GFP
AT-hook compared to that in cells constitutively expressing p50GFP, demonstrating that p50GFP
AT-hook was capable of functioning as a trans-dominant mutant. Mutated forms of KSHV and MHV-68 ORF 50 can also function in a trans-dominant manner (16, 31). Further investigation will be required to elucidate the mechanism by which p50GFP
AT-hook disrupts the function of wild-type ORF 50. One possibility is that mutated ORF 50 dimerizes with wild-type ORF 50 and that these heterodimers are no longer able to activate the transcription of ORF 50-responsive genes because of their inability to bind the ORF 50 RE. The ORF 50 homologue of EBV has been shown to function in this manner (17). However, it has not been shown whether wild-type or mutated HVS ORF 50 is capable of forming dimers. Alternatively, mutated ORF 50 may reduce viral replication by competing with wild-type ORF 50 for essential transcription factors within the nucleus and hence reduce wild-type ORF 50 transactivation.
Sequence analysis of the gamma-2 herpesvirus ORF 50 homologues has revealed that HVS strain C488 and herpesvirus ateles contain putative AT hook DNA binding domains. However, we have not identified a similar motif in other gamma-2 herpesvirus ORF 50 homologues, such as KSHV or MHV-68. The AT hook-containing HMGA proteins are DNA binding proteins which promote gene activation by facilitating the formation of stereo-specific complexes called enhanceosomes on promoter and/or enhancer regions as a consequence of both protein-DNA and protein-protein interactions. It has been demonstrated that KSHV ORF 50 can transactivate viral gene expression via direct and indirect mechanisms. Therefore, it will be of interest to determine whether HMGA cellular proteins and specifically their AT hooks play a significant role in ORF 50-mediated transactivation in both direct and indirect transactivation mechanisms. Preliminary analysis suggests that this is indeed the case (Ren Sun, University of California, Los Angeles, personal communication). They may promote the formation of a stereo-specific complex on KSHV DE promoters or remodel the chromatin-DNA structure of DE promoters, allowing active gene expression through the recruitment of transcription factors. In summary, we have demonstrated that the prototype gamma-2 herpesvirus ORF 50 protein contains a DNA binding motif reminiscent of an AT hook, which is required for DNA binding and transactivation. We believe that the AT hook motif of HVS ORF 50 is the first identification of a functional AT hook DNA binding motif in a viral transactivating protein.
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