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Journal of Virology, March 2004, p. 3083-3088, Vol. 78, No. 6
0022-538X/04/$08.00+0     DOI: 10.1128/JVI.78.6.3083-3088.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.

Characterization of a Neuraminidase-Deficient Influenza A Virus as a Potential Gene Delivery Vector and a Live Vaccine

Kyoko Shinya,¹ Yutaka Fujii,² Hiroshi Ito,³ Toshihiro Ito,³ and Yoshihiro Kawaoka^1,4,5*

Division of Virology, Department of Microbiology and Immunology, Institute of Medical Science, University of Tokyo, Tokyo 108-8639,¹ Department of Virology, Graduate School of Biomedical Sciences, Hiroshima University, Hiroshima 734-8551,² Department of Veterinary Public Health, Faculty of Agriculture, Tottori University, Tottori 680-8553,³ CREST, Japan Science and Technology Corp., Saitama 332-0012, Japan,⁴ Department of Pathobiological Sciences, University of Wisconsin, Madison, Wisconsin 53706⁵

Received 28 July 2003/ Accepted 25 November 2003

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We recently identified a packaging signal in the neuraminidase (NA) viral RNA (vRNA) segment of an influenza A virus, allowing us to produce a mutant virus [GFP(NA)-Flu] that lacks most of the NA open reading frame but contains instead the gene encoding green fluorescent protein (GFP). To exploit the expanding knowledge of vRNA packaging signals to establish influenza virus vectors for the expression of foreign genes, we studied the replicative properties of this virus in cell culture and mice. Compared to wild-type virus, GFP(NA)-Flu was highly attenuated in normal cultured cells but was able to grow to a titer of >10⁶ PFU/ml in a mutant cell line expressing reduced levels of sialic acid on the cell surface. GFP expression from this virus was stable even after five passages in the latter cells. In intranasally infected mice, GFP was detected in the epithelial cells of nasal mucosa, bronchioles, and alveoli for up to 4 days postinfection. We attribute the attenuated growth of GFP(NA)-Flu to virion aggregation at the surface of bronchiolar epithelia. In studies to test the potential of this mutant as a live attenuated influenza vaccine, all mice vaccinated with 10⁵ PFU of GFP(NA)-Flu survived when challenged with lethal doses of the parent virus. These results suggest that influenza virus could be a useful vector for expressing foreign genes and that a sialidase-deficient virus may offer an alternative to the live influenza vaccines recently approved for human use.

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A variety of viruses have been tested for their potential as gene therapy and/or vaccine vectors in the treatment or prevention of cancer, as well as neurological, immunologic, hereditary, and infectious diseases (2, 15, 34, 41). Influenza viruses have been evaluated for their use as vaccine vectors against infectious diseases (e.g., human immune deficiency, malaria, and arenavirus infection) and cancer (4, 8, 24, 31, 38, 43). Although human influenza viruses replicate primarily in respiratory organs, they are capable of inducing mucosal immune responses not only in their replication sites but also in distal mucosa including genital and intestinal tracts, suggesting their potential as vaccine vectors to combat agents that initiate infection at mucosal surfaces (8, 24). Moreover, recent technological innovations, including plasmid-based reverse genetics, have made it possible to manipulate influenza viruses to enhance their candidacy as vaccines and gene delivery vectors (28).

Influenza A viruses cause both pandemics and epidemics, contribute substantially to annual mortality rates in humans, and are responsible for enzootic outbreaks in other animals, leading to substantial economic loss (42). Treatment with neuraminidase (NA) inhibitors clearly improves the course of influenza in patients (14), but these antiviral compounds must be administered early in the infection to be effective. Moreover, the emergence of drug-resistant variants remains a concern (1, 35), although resistance to NA inhibitors is less common than resistance to amantadine or rimantadine (12, 25, 37). Thus, vaccination of large human populations affords the best protection against influenza outbreaks. The efficacy of current inactivated vaccines depends on the extent of their antigenic match with circulating viruses, with protective effects typically seen in 70 to 90% of cases. Such vaccines have only a limited capacity to induce cell-mediated and mucosal immune responses. Cold-adapted live vaccines have shown promising results in young children (33), but preliminary results indicate that they may not be appreciably more effective than the current inactivated vaccine in adults (7). Moreover, the limited number of attenuating amino acid changes in vaccine strains raises concern over the emergence of virulent revertants, although such vaccines have been phenotypically stable in clinical trials (5).

We recently generated an influenza virus [GFP(NA)-Flu] containing a mutant NA segment in which most of the coding region was replaced with the enhanced green fluorescent protein (GFP) gene (9). Because this virus lacks functional sialidase activity, it was predicted to be attenuated in animals. To characterize GFP(NA)-Flu as a potential gene delivery vector and to determine its efficacy as a live attenuated vaccine that would induce both humoral and cellular, as well as mucosal, immune responses, we tested several of its properties both in vitro and in vivo, including cell tropism after GFP expression, and then evaluated its protective efficacy in a mouse model.

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Cells. 293T human embryonic kidney cells were maintained in Dulbecco modified Eagle medium supplemented with 10% fetal calf serum. Madin-Darby canine kidney (MDCK) cells and MaKS cells, a derivative of MDCK cells expressing a reduced level of sialic acid (17), were maintained in minimal essential medium containing 10% fetal bovine serum.

Plasmids. pPolINA(183)GFP(157), used for the production of negative-sense RNA, contains the 3' noncoding ends of NA vRNA and a complementary sequence encoding a fusion protein composed of 61 N-terminal NA codons and GFP (Clontech), two consecutive stop codons (TAA-TAG), and 185 bases of the 5' end of NA vRNA (Fig. 1) (9). It was produced by replacing the region corresponding to nucleotides 203 to 1109 (positive sense) of the A/WSN/33 (WSN; H1N1) NA gene in pT7Blue-NA with a BglII site by inverse PCR. The GFP gene was then cloned into this BglII site and a StuI site at position 1226 (in the wild-type NA gene) in frame with the NA protein. The NA(183)GFP(157) gene was then inserted into the BsmBI site of a PolI plasmid, pHH21. All plasmid constructs were sequenced to ensure that unwanted mutations were not introduced by PCR.

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FIG. 1. Schematic diagram of the NA(183)GFP(157) vRNA in which most of the NA coding region has been replaced with the GFP gene. The regions shown in blue correspond to the noncoding regions of this segment, and regions in beige indicate the coding regions. This insertion yields a fusion protein consisting of 61 N-terminal residues of the NA protein and intact GFP. The lengths of the regions are not drawn to scale.

Generation of GFP(NA)-Flu. A virus possessing the NA(183)GFP(157) vRNA instead of NA vRNA [designated GFP(NA)-Flu] was produced as described previously (9, 28). Briefly, 293T cells were transfected with seven plasmids for the production of all WSN influenza vRNA segments, except the NA vRNA, and with pPolINA(183)GFP(157), together with protein expression plasmids for PA, PB1, PB2, and NP. The supernatant from these plasmid-transfected cells was incubated with MaKS cells in minimal essential medium with N-tosyl-L-phenylalanine chloromethyl ketone (TPCK)-trypsin (2 µg/ml) for 48 h. The stock virus was produced in these cells. In some experiments, GFP(NA)-Flu virus was concentrated 200-fold by ultracentrifugation before use. To test the stability of GFP expression by GFP(NA)-flu, MaKS cells (50% confluent) were infected with this virus at a multiplicity of infection (MOI) of 0.1 in the presence of TPCK-trypsin (2 µg/ml). Two days later, virus in the supernatant was harvested, and the procedure was repeated four more times.

Experimental infection of mice. Four-week-old female BALB/c mice were intranasally inoculated with 1.2 x 10⁷ PFU of virus. On day 0 through days 5 and 7 postinoculation (p.i.), nasal turbinates and lungs were harvested, frozen, and embedded in paraffin or resin for histologic examination. Virus in the respiratory organs was titrated by plaque assay. The dose required to kill 50% of mice (MLD₅₀) was determined as previously described (10).

Virus for challenge experiments. Wild-type WSN virus was propagated in MDCK cells and stored at -80°C until use. The MLD₅₀ was evaluated by a previously described method (10).

Immunization and virus challenge. Four-week-old female BALB/c mice were intranasally inoculated with 50 µl (1.1 x 10⁴ to 1.1 x 10⁷ PFU) of GFP(NA)-Flu virus. One month after immunization, the mice were intranasally challenged with 10 or 100 MLD₅₀ of the wild-type WSN virus. To determine virus titers in lungs and nasal turbinates, we harvested and homogenized these organs 3 days after challenge, performing titrations on MDCK cells by plaque assay. The remaining animals were observed for 14 days for clinical signs and symptoms.

Detection of virus-specific antibody. Serum samples were examined for antibody by hemagglutinin inhibition (HI) and plaque reduction neutralization assays after treatment with receptor-destroying enzyme (HI tests) or heat inactivation at 56°C for 30 min (neutralization assay). A standard plaque reduction assay was performed to determine the WSN virus-specific neutralizing titer of the sera. Wild-type WSN virus (100 PFU) was mixed with an equal volume of serially diluted serum and incubated with MDCK cells at 37°C for 1 h. The neutralizing antibody titer is reported as the highest dilution of serum able to reduce the number of plaques by 50%.

Top Abstract Introduction Materials and Methods Results Discussion References

 
In vitro properties of GFP(NA)-Flu. We first tested the growth properties of the NA-deficient virus in MDCK and MaKS cells. Because the latter cells express reduced levels of sialic acid on the cell surface, they allow mutant influenza viruses lacking sialidase activity to undergo multiple cycles of replication without exogenous sialidase (16, 17). Figure 2 shows the growth profiles of GFP(NA)-Flu and wild-type WSN virus in each cell line infected at an MOI of 10^-4. The wild-type virus replicated well in both cell lines, although a maximal titer was achieved more rapidly in MDCK cells than in MaKS cells. Although GFP(NA)-Flu virus replicated more slowly than WSN virus in MaKS cells, it reached a titer only 1 log lower than that of WSN virus. Importantly, the growth of GFP(NA)-Flu was severely attenuated in MDCK cells, reaching a titer of only 10³ PFU/ml. The percentage of GFP-expressing virus remained the same up to five passages in MaKS cells (>61%), suggesting stable maintenance of the vGFP(NA) segment in the virus population.

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FIG. 2. Growth kinetics of GFP(NA)-Flu and wild-type WSN virus in cell culture. MaKS (KS; broken line) or MDCK (CK; solid line) cells were infected with either GFP(NA)-Flu or wild-type WSN virus at an MOI of 10-4. At the indicated times after infection, virus titers in the supernatant were determined. The values are means of triplicate experiments. For GFP(NA)-Flu, the numbers of total plaques (open and closed black squares) and those of GFP-positive plaques (open and closed green triangles) were recorded separately.

Growth properties of GFP(NA)-Flu virus in vivo. To determine the growth properties of GFP(NA)-Flu virus in mice, we intranasally inoculated mice with 1.2 x 10⁷ PFU/50 µl of virus. All mice intranasally infected with this virus survived but showed reduced activity for several days after infection. In contrast, the wild-type WSN virus was highly lethal to mice (with 50% lethal dose [LD₅₀] of 3.4 log₁₀ PFU). GFP(NA)-Flu was recovered until day 4 from lungs, but only up to day 2 from nasal turbinates (Table 1). However, unlike the wild-type WSN virus, which grew to high titers in lungs (>7.4 log₁₀ PFU/g; day 3 p.i.) and nasal turbinates (>4.6 log₁₀ PFU/g; day 3 p.i.) (Table 2, control), replication of GFP(NA)-Flu was limited (Table 1). To determine the pattern of GFP(NA)-Flu infection in respiratory organs and the cell types infected, we examined GFP expression in frozen sections. GFP fluorescence could not be detected immediately after intranasal inoculation of virus (Fig. 3A) but was readily observed in nasal epithelia (Fig. 3B) on day 1 p.i. GFP fluorescence was detected in the epithelial cells of the bronchioles on day 1 p.i. (Fig. 3C) and in alveolar cells on day 2 p.i. (Fig. 3D), with the number of fluorescence-positive cells in alveoli decreasing at 3 to 4 days p.i. (Fig. 3E and F). Electron microscopy revealed an aggregation of progeny viruses on the surface of degenerating bronchiolar epithelia at 12 h p.i. (Fig. 3G and H), a finding consistent with a lack of sialidase activity (19, 30).

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TABLE 1. Replication of GFP(NA)-Flu virus in micea

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TABLE 2. Protection against lethal challenge in mice immunized with GFP(NA)-Flu virusa

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FIG. 3. GFP(NA)-Flu infection in respiratory organs of mice. GFP fluorescence was not detected immediately after virus inoculation (A) but was apparent in the nasal epithelium on day 1 postinfection (B). Intense fluorescence was apparent in bronchiolar epithelium on day 1 postinfection (C), shifting to the alveolus by day 2 (D) with diminishing intensity by day 3 (E) or 4 (F). (G and H) Aggregated virions were observed by electron microscopy on the surface of degenerating bronchiolar epithelium at 12 h postinfection. Bar, 500 nm.

Immunization and protection tests. To evaluate GFP(NA)-Flu as a live vaccine, we intranasally infected mice with various amounts of the virus and then challenged them with 10 or 100 MLD₅₀ of the wild-type WSN virus 1 month after GFP(NA)-Flu infection. Mice immunized with 1.1 x 10⁶ (PFU/50 µl) virus were completely protected from lethal WSN virus challenge, with no virus recovered (Table 2). Reduced levels of protection, as judged from virus titers in respiratory organs and/or animal death, were apparent in groups of mice immunized with 1.1 x 10⁵ (PFU/50 µl) of GFP(NA)-Flu. To determine the stability of GFP gene expression during replication in mice, we titrated mouse organs by plaque assay and determined the number of GFP-expressing plaques in total plaques. Even after replication in mice, a substantial percentage of the virus still maintained the intact GFP gene, although it was reduced compared to virus passaged in MaKS cells (29 to 53% [Table 1] versus 61 to 72% [data not shown]).

Levels of serum HI and virus-neutralizing antibody titers before and 3 days after virus challenge correlated with the extent of protection against WSN virus challenge (Table 3). In addition, on day 14 postchallenge, virus-neutralizing antibody titers did not differ among mice immunized with different doses of GFP(NA)-Flu.

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TABLE 3. HI and neutralizing antibody titers in mice immunized with GFP(NA)-Flu virusa

Top Abstract Introduction Materials and Methods Results Discussion References

 
Influenza viruses possessing genes or portions of genes of unrelated origins have been produced (4, 11, 21, 24, 26, 27, 29, 32, 38, 44). As a marker gene, we introduced the GFP gene into the NA segment of an influenza virus, where it was stably maintained during repeated passage of the virus in cell culture. GFP expression was also detected in intranasally infected mice up to 4 days postinfection, although the percentage of virus still expressing GFP declined during replication in this animal. Although the precise mechanism of such a loss was not further investigated in the present study, the level and duration of GFP expression suggest that foreign proteins expressed in this system likely induce sufficient levels of immunity. Hence, these findings indicate that this NA-deficient virus system could be exploited as a vaccine vector for the expression of foreign genes.

Intranasal infection of mice with an NA-deficient virus generated protective immunity against lethal influenza virus challenge (Table 2). Although the NA protein is a major surface antigen and can induce protection from influenza virus infection (6, 18, 22, 36), the hemagglutinin (HA) plays a more important role in eliciting protective immune responses (23). In fact, an avian influenza virus outbreak caused by an H7N1 virus in Italy in 1999 was finally controlled by an HA- but not an NA-matched inactivated H7N3 virus vaccine after attempts to control the outbreak by mass slaughtering of infected poultry failed (3). NA-deficient viruses are attenuated because they aggregate at the cell surface after their release from infected cells (19, 20, 30). NA molecules can also stimulate the activation of transforming growth factor ß, leading to the induction of apoptosis and to immunologic tolerance (13, 39). Thus, NA-deficient viruses may have the potential to serve as an alternative influenza vaccine for humans as well as animals.

We previously reported the use of a replication-incompetent influenza virus as a potential vaccine (40). This virus infects cells only once and expresses proteins important for the induction of protective immune responses but does not produce progeny. Thus, it is safe (no emergence of virulent revertants is anticipated) and yet produces humoral, as well as cellular and mucosal, immune responses. However, to generate replication-incompetent influenza virus, we must transfect cells with plasmids, thus restricting its commercial value until a system is devised that will allow large-scale production of the virus. In contrast, the NA-deficient virus described here can undergo multiple cycles of replication in a cell line with reduced sialylation, although a system to produce a higher virus titer would be desirable for its use. Moreover, the vaccine efficacy of the NA-deficient virus is equivalent to that of the replication-incompetent virus (40).

We would point out that other genes in the NA-deficient virus do not contain attenuating mutations, which may raise concern over the safety of this virus as a vaccine. However, the deletion in the NA gene appears sufficiently extensive to prevent reversion of the vaccinating virus to the wild type. Also, insertion of the GFP gene was intended as a means to evaluate viral replication in vivo and therefore would not be required in production of the vaccine strain, avoiding any adverse effects from expression of this marker gene. In fact, instead of the GFP gene, a gene encoding a protein antigen from another infectious agent could be inserted into the NA segment, making such viruses multivalent live vaccines.

 
We thank Krisna Wells and Martha McGregor for excellent technical assistance and John Gilbert for editing the manuscript.

This study was supported by National Institute of Allergy and Infectious Diseases Public Health Service research grants; by CREST (Japan Science and Technology Corp.); by grants-in-aid by the Ministry of Education, Culture, Sports, Science, and Technology of Japan; by the Ministry of Health, Labor, and Welfare of Japan; and by research fellowships of the Japan Society for the Promotion of Science for Young Scientists.

 
* Corresponding author. Mailing address: Institute of Medical Science, University of Tokyo, Shirokanedai, Minato-ku, Tokyo 108-8639, Japan. Phone: 81-3-5449-5310. Fax: 81-3-5449-5408. E-mail: kawaoka{at}ims.u-tokyo.ac.jp.

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Journal of Virology, March 2004, p. 3083-3088, Vol. 78, No. 6
0022-538X/04/$08.00+0     DOI: 10.1128/JVI.78.6.3083-3088.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.

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