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Journal of Virology, March 2004, p. 2348-2356, Vol. 78, No. 5
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.5.2348-2356.2004
and Bernard Moss*
Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892-0445
Received 4 September 2003/ Accepted 22 October 2003
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More than a dozen proteins are associated with the IMV membrane, including some with and others without transmembrane domains. One transmembrane protein, L1, and the structurally related but less well-characterized F9 protein, have intramolecular disulfide bonds in their cytoplasmic domains that are formed by vaccinia virus-encoded thiol-disulfide oxidoreductases (19, 20, 25). Here, we present the initial characterization of the protein encoded by the vaccinia virus A28L open reading frame (ORF) and show that this protein is also a substrate of the virus-specific cytoplasmic disulfide bond formation pathway. (Vaccinia virus ORFs are designated by a capital letter indicating a HindIII restriction endonuclease fragment, a number indicating the position in the HindIII fragment, and a letter [L or R] indicating the direction of transcription, e.g., A28L. The corresponding protein is designated by a capital letter and number, e.g., A28.) The A28 protein contains two disulfide bonds, is localized to the IMV membrane, and is essential for virus reproduction in cell culture.
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Construction of vA28-HA and vA28-HAi.
vA28-HA was derived from vaccinia virus WR by attaching the sequence encoding the influenza hemagglutinin (HA) epitope with an additional C-terminal serine codon (YPYDVPDYAS) to the 3' terminus of the A28L gene, as previously described for the construction of vE10-HA (18). In brief, recombinant PCR (Expand High Fidelity PCR system; Roche Applied Science) was used to assemble a DNA segment containing the A28L gene with the HA epitope tag sequence, followed by the Escherichia coli ß-glucuronidase (GUS) gene under the control of the vaccinia virus strong early-late synthetic promoter (3), and flanking viral DNA sequences of
500 bp at both ends. The final PCR product was transfected into cells infected with vaccinia virus WR, where homologous recombination occurred. Plaques containing recombinant viruses expressing the GUS gene, which stained blue, were picked, and the recombinant virus was purified by three cloning cycles.
vA28-HAi was derived from vT7lacOI (1), which contains an IPTG (isopropyl-ß-D-thiogalactoside)-inducible bacteriophage T7 RNA polymerase gene and the E. coli lac repressor gene inserted into the nonessential thymidine kinase locus, by using the procedure described previously for the construction of vE10i (18). The final product was assembled by recombinant PCR and inserted into vT7lacOI by homologous recombination. In addition to the lac repressor and IPTG-inducible T7 polymerase of the parental vT7lacOI, vA28-HAi contains an HA epitope-tagged A28L gene under the control of a lac operator-regulated T7 promoter.
Expression vectors. To express A28 under the control of a vaccinia virus promoter, the A28L ORF was amplified by PCR using DNA from the cosmid pWR 120-150 (22) as a template and inserted into the pGEM-T easy vector (Promega). The strong late P11 promoter sequence (GAATTTCATTTTGTTTTTTTCTATGCTATAAATG) (the start codon is underlined) was included at the 5' end of the forward PCR primer, and the HA epitope coding sequence was included at the 3' end of the reverse PCR primer. For in vitro synthesis of A28 under the control of the bacteriophage T7 promoter, the A28L ORF with a C-terminal HA epitope coding sequence was inserted into the pVOTE vector (24). All constructs were verified by sequencing.
Transfection of vaccinia virus-infected cells with expression plasmids. BS-C-1 cells in a 24-well plate were infected with 5 PFU of virus per cell and 2 h later were transfected with 0.25 µg of plasmid that had been incubated with 2 µl of Lipofectamine 2000 (Invitrogen) according to the manufacturer's protocol. The cells were incubated for 15 to 24 h after infection without changing the medium.
Protein analysis. Infected or infected and transfected cells were collected by centrifugation, solubilized in nonreducing sodium dodecyl sulfate (SDS) loading buffer (Invitrogen) containing 20 mM N-ethylmaleimide (NEM; Sigma) or 20 mM 4-acetamido-4'-maleimidylstilbene-2,2'-disulfonic acid (AMS; Molecular Probes) or NuPage sample reducing agent (Invitrogen). In some cases, the proteins were reduced with Tris-(2-carboxyethyl) phosphine prior to alkylation, as described previously (20). All lysates were sonicated and boiled. Proteins were resolved by SDS-polyacrylamide gel electrophoresis (PAGE) in 10 to 20% polyacrylamide gels in Tris-glycine or 12% NuPage gels (Invitrogen). The proteins were transferred to a nitrocellulose membrane; incubated with peroxidase-conjugated rat high-affinity anti-HA monoclonal antibody (3F10; Roche Molecular Biochemicals) or other antibodies, followed by secondary peroxidase-conjugated antibodies; and detected with a chemiluminescence detection kit (Pierce).
Protein sequence analysis. The nonredundant protein sequence database (National Center for Biotechnology Information, National Institutes of Health, Bethesda, Md.) was searched using the BLASTP program, and iterative searches were performed using the PSI-BLAST program (2). Multiple sequence alignments were constructed using the CLUSTAL-X program (23). Protein secondary structure was predicted using the PHD program, with multiple sequence alignments submitted as queries (14).
Electron microscopy. Infected cells were fixed in 2% glutaraldehyde in 0.1 M sodium cacodylate buffer, washed in 0.1 M sodium cacodylate buffer, postfixed with reduced osmium tetroxide, and washed in buffer. The cells were dehydrated in a series of ethyl alcohol dilutions (50, 70, and 100%), followed by propylene oxide. The cells were then embedded in EMbed 812. Sections were obtained using the Leica Ultracut S ultramicrotome. Thin sections were stained with 7% uranyl acetate in 50% ethanol and then with 0.01% lead citrate and analyzed on the FEI CM100 transmission electron microscope.
Purified virus was adsorbed onto Formvar-coated, carbon-treated copper mesh grids and incubated with a mouse monoclonal anti-HA antibody (HA.11; Covance), followed by a secondary rabbit anti-mouse immunoglobulin G antibody and protein A conjugated to 10-nm-diameter colloidal gold. The virions were stained briefly with uranyl acetate and examined.
Fluorescence microscopy. HeLa cells were grown on coverslips and infected with vaccinia virus at a multiplicity of 10 PFU per cell. The cells were fixed with 4% paraformaldehyde in phosphate-buffered saline for 20 min at 4°C, followed by 40 min at room temperature. After being washed three times with cold phosphate-buffered saline, the cells were incubated with the anti-B5 monoclonal antibody 19C2 (15), followed by fluorescein isothiocyanate-conjugated donkey anti-rat antibody (Jackson Immunoresearch). After being washed three times in cold phosphate-buffered saline, the cells were permeabilized in 0.05% saponin in phosphate-buffered saline and stained with 5 µg of diamidino-2-phenylindole dihydrochloride (Molecular Probes) per ml for 5 min. Filamentous actin was visualized by staining the cells with Alexa Fluor 568 phalloidin (Molecular Probes) according to the manufacturer's directions. Images were collected on a Leica TCS-NT/SP2 inverted confocal microscope system with an attached argon ion laser (Coherent Inc.).
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-helices (Fig. 1).
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FIG. 1. Multiple alignment of A28 orthologs. The alignment includes one representative sequence from each genus of Chordopoxvirinae for which such information is available and the two complete Entomopoxvirinae sequences. VAC, vaccinia virus (Orthopoxvirus); MCV, molluscum contagiosum virus (Molluscipoxvirus); YLDV, Yaba-like disease virus (Yatapoxvirus); LSDV, lumpy skin disease virus (Capripoxvirus); SPV, swinepox virus (Suipoxvirus); MYX, myxoma virus (Leporipoxvirus); FPV, fowlpox virus (Avipoxvirus); MSV, Melanoplus sanguinipes entomopoxvirus (Entomopoxvirus B); AMV, Amsacta moorei entomopoxvirus (Entomopoxvirus B). Invariant amino acid residues are shown by white letters against a black background, and conserved cysteines are indicated by asterisks. TM, predicted transmembrane domain. The predicted secondary structure (SS), consisting of six putative ß-strands (E) and two flanking -helices (H), is shown.
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FIG. 2. Temporal synthesis of A28. (A) Construction of vA28-HA. The DNA used for the insertion of the HA tag coding sequence at the 3' end of the A28L ORF by homologous recombination was constructed by PCR and is shown schematically. A29L and A27L are ORFs flanking the A28L ORF. PA28L and PE/L are the native A28L promoter and a strong early-late synthetic promoter, respectively. The GUS gene was used as a reporter for the screening procedure, and clonally pure vA28-HA was isolated by repeated plaque isolations. (B) Time course of A28-HA synthesis in infected cells. Replicate cell cultures were infected with 5 PFU of vA28-HA per cell for 1 h; unadsorbed virus was removed by washing the cell monolayers three times with medium, and the incubation continued. Additional cells were infected in the presence of AraC (40 µg/ml). Cells were collected at the indicated times postinfection (p.i.) and disrupted in SDS-PAGE loading buffer without reducing agent and in the presence of 20 mM NEM. Proteins from total cell extract were resolved by SDS-PAGE; A28-HA was detected by Western blotting with peroxidase-conjugated anti-HA rat monoclonal antibody. The position of the 17-kDa A28-HA protein is indicated by an arrow. The 27- and 24-kDa bands migrate between the 30- and 21-kDa markers shown on the left.
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A28-HA contains two intramolecular disulfide bonds.
A28 and all poxvirus homologs were predicted to have four conserved cysteines within the nonhydrophobic segment of the protein (Fig. 1A). In some cases, intramolecular disulfide-bonded proteins have a compact structure and can be resolved from their reduced forms by SDS-PAGE. We therefore compared the mobilities of A28-HA proteins from infected cells under reducing and nonreducing conditions but found no difference (data not shown). To explain this result, we considered three possibilities: (i) the cysteines of A28 are not disulfide bonded, (ii) A28 has disulfide bonds that are not reducible by the methods used, or (iii) A28 has disulfide bonds but their reduction does not alter the electrophoretic mobility under the gel conditions used. To detect free cysteines, we used AMS as an alkylating agent. For each reactive cysteine, AMS increases the mass of a protein by 0.536 kDa. Because nonalkylated proteins can become alkylated with unpolymerized acrylamide during electrophoresis, we used NEM-alkylated A28 as the control. NEM increases the mass by only 0.125 kDa per reactive cysteine. Therefore, if A28 has four reactive cysteines, there would be a mass difference of 1.6 kDa between the AMS- and NEM-alkylated proteins, which would be easily discerned by SDS-PAGE. A28-HA synthesized in vitro had free cysteines, as indicated by the clear decrease in mobility when AMS was used as an alkylating agent (Fig. 3A). A28-HA synthesized in infected cells exhibited no mobility change with AMS treatment (Fig. 3A), indicating the absence of free cysteines. However, when A28-HA from infected cells was first reduced with Tris-(2-carboxyethyl) phosphine and then alkylated with AMS, the mass of the majority of the protein increased by
2 kDa. Therefore, the third explanation was correct: A28 from infected cells contains two reducible disulfide bonds. The same result was obtained when A28 was extracted from purified virions (data not shown).
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FIG. 3. Formation of disulfide bonds in A28-HA. (A) A28-HA contains two intramolecular disulfide bonds. In vitro, A28-HA synthesized in a coupled transcription-translation recticulocyte lysate system was captured with anti-HA antibody, and aliquots were disrupted in SDS-PAGE loading buffer containing (+) NEM or AMS or no alkylating agent (-), as indicated. In vivo, cells were infected with vA28-HA, collected 24 h after infection, and disrupted in SDS-PAGE loading buffer containing NEM, AMS, or Tris-(2-carboxyethyl) phosphine (TCEP), followed by AMS. Proteins were resolved by SDS-PAGE; A28L-HA was detected by Western blotting with anti-HA antibody. A28, A28-HA; red, reduced A28-HA; ox, oxidized A28-HA. (B) Expression of E10 and G4 is required to form disulfide bonds in A28. Cells were infected with either vE10i or vG4i without IPTG or with vT7lacOI (vT7) as a control and transfected with plasmid expressing A28-HA under the control of the strong late vaccinia virus promoter P11. Cells were collected 20 h after infection. Proteins from infected and transfected cells were allowed to react with AMS and were analyzed as for panel A. A28-HA made in vitro was treated with AMS (next to last lane on right) or NEM (last lane on right) to provide mobility markers.
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Localization of A28 in virus particles. A28 was tightly associated with purified IMV and was not released by incubation in Tris (pH 7.5) buffer at 37°C for 30 min (Fig. 4). The similar sizes of A28 made in vitro and in infected cells (Fig. 3) suggested that the N-terminal hydrophobic sequence of A28 was not cleaved from the rest of the protein and most likely functions as a transmembrane anchor that holds the protein in the membrane of IMV. The distribution of A28 between nonionic-detergent-soluble and -insoluble fractions of purified virions was in agreement with its membrane association. At least 50% of A28 could be extracted from purified virions with NP-40 alone, and there was no difference, in this respect, between A28 and L1, a well-characterized IMV membrane protein (Fig. 4). Unexpectedly, but reproducibly, less A28 was extracted when dithiothreitol was included in addition to NP-40. It might be that A28 is less soluble, interacts with insoluble proteins of the core, or is more susceptible to degradation when artificially reduced in the absence of a denaturing agent.
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FIG. 4. Extraction of A28-HA from purified virions. Triplicate samples of sucrose gradient-purified virions were resuspended in Tris buffer alone (50 mM Tris, pH 7.5) or in Tris buffer containing (+) 1% NP-40 or 50 mM dithiothreitol and incubated for 30 min at 37°C. The soluble (S) and insoluble (P) fractions were separated by centrifugation and analyzed by Western blotting with anti-HA or anti-L1 polyclonal antibody (11).
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FIG. 5. Immunoelectron microscopy of purified virions. Purified IMV preparations of A28-HA, E10-HA, or wild-type vaccinia virus WR were adsorbed to grids and stained with a mouse monoclonal anti-HA antibody, followed by anti-mouse antibody and protein A conjugated to gold particles.
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FIG. 6. Effect of IPTG on replication of vA28-HAi. (A) Diagram of relevant portions of the vA28-HAi genome. The locations of the A29L, A28L-HA, A27L, and GUS ORFs are shown. P11, a vaccinia virus late promoter; P7.5, a vaccinia virus early-late promoter; PA28L, promoter of A28L gene; PT7, bacteriophage T7 promoter; lacO, E. coli lac operator; lacI, E. coli lac repressor ORF; T7 pol, bacteriophage T7 RNA polymerase ORF. (B) Plaque formation and virus spread. BS-C-1 cell monolayers were infected with vA28-HAi in the absence (top) or presence (bottom) of 100 µM IPTG. The cells were incubated for 48 h and then stained with crystal violet (left) or for 24 h and then fixed with 4% paraformaldehyde and stained with a high-titer rabbit polyclonal antivaccinia virus serum diluted 1:1,000 in phosphate-buffered saline containing 2% fetal bovine serum, followed by Texas Red-conjugated anti-rabbit antibody (right). The image on the right is a merge of phase-contrast and epifluorescence microscopy, with infected cells appearing red. (C) Effect of IPTG on the replication of vA28L-HAi under one-step growth conditions. Replicate samples of BS-C-1 cell monolayers were infected with 5 PFU of vA28L-HAi per cell, incubated for 1 h at 37°C, washed three times, and incubated further at the same temperature in the presence (+) or absence (-) of 100 µM IPTG. The cells were harvested at the indicated times postinfection (p.i.) and washed, and the virus titers were determined by plaque assay in the presence of 100 µM IPTG.
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Late-protein synthesis and processing of the major core proteins occur normally in the absence of A28. To determine whether virus replication was inhibited at an early or late stage, cells were infected with vA28-HAi in the presence or absence of inducer and were metabolically labeled with [35S]methionine at various times. The proteins were then analyzed by SDS-PAGE and autoradiography. We could discern no difference in the patterns of viral-protein bands or in their intensities in the presence or absence of IPTG at any time examined (Fig. 7, top, and data not shown). Furthermore, the p4a, p4b, and p28 core protein precursors, derived from the A10R, A3R, and L4R ORFs, were processed into their mature products, 4a, 4b, and a 25-kDa protein, during the chase (Fig. 7, top). Processing was confirmed by Western blotting with specific antibody that recognizes p4b and 4b. Both the precursor and product were detected at 12 and 24 h in the presence or absence of inducer (Fig. 7, bottom). Since the processing of core proteins is dependent on morphogenesis (9), these data suggested that morphogenesis occurred normally.
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FIG. 7. Synthesis of viral proteins in cells infected with vA28L-HAi in the presence (+) or absence (-) of IPTG. BS-C-1 cell monolayers were infected with vA28L-HAi at a multiplicity of 5 PFU per cell in the presence or absence of 100 µM IPTG as indicated. At 12 h postinfection (p.i.), duplicate cell monolayers were pulse-labeled with [35S]methionine for 30 min, and the cells were either harvested immediately (Pulse) or incubated with an excess of unlabeled methionine for an additional 12 h (Chase). The proteins were denatured with SDS and reducing agent, analyzed by electrophoresis in a 4 to 20% polyacrylamide gel, transferred to a nitrocellulose membrane, and analyzed by autoradiography (top) or Western blotting with anti-p4b/4b antibody (bottom).
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FIG. 8. Electron microscopy of cells infected with vA28-HAi in the absence of IPTG. BS-C-1 cell monolayers were infected with vA28-HAi in the absence of IPTG for 24 h, fixed, and embedded in EPON, and ultrathin sections were prepared. (A) IMV in the cytoplasm. (B) CEV at the cell surface. The increased electron density on the concave surface of the plasma membrane just under some CEV presumably represents the remains of the fused outer intracellular enveloped virion membrane.
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FIG. 9. Detection of CEV and actin tails by confocal microscopy. HeLa cells were infected with vA28-HAi in the presence (+) or absence (-) of IPTG. After 24 h, the cells were fixed and stained with anti-B5 monoclonal antibody, followed by fluorescein isothiocyanate-conjugated goat anti-rat antibody (green). The cells were then washed and permeabilized prior to staining the DNA with diamidino-2-phenylindole dihydrochloride (blue) and staining filamentous actin with Alexa Fluor 568 phalloidin (red). The arrows point to CEV at the tips of actin tails.
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The presence of A28 in all poxviruses and its high sequence conservation predicted an essential role in the virus life cycle. To investigate this role, we constructed a recombinant vaccinia virus in which the E. coli lac operator stringently regulated the expression of the A28L ORF. The recombinant virus, vA28-HAi, exhibited a conditional-lethal phenotype, as replication and virus spread were dependent on the addition of inducer. Stocks of vA28-HAi, prepared in the presence of inducer, were used to infect cells in its absence. In this way, we hoped to determine the step at which A28 is required in the poxvirus replication cycle. Previously, when this approach was used to analyze the roles of the redox proteins E10 (18), A2.5 (16), and G4 (25) or the L1 membrane protein (12), blocks in virus assembly and processing of core proteins were found. In contrast, the presence or absence of IPTG made no discernible difference in the synthesis or processing of viral proteins. Moreover, the assembly and morphogenesis of virions were unimpaired in the absence of A28, as demonstrated by electron microscopy. In the absence of IPTG, we also detected extracellular virus particles at the tips of actin tails by confocal microscopy. Although such particles are usually responsible for cell-to-cell spread of vaccinia virus, such spread did not occur, suggesting that virions made in the absence of IPTG and lacking A28 were not infectious. In another study, we purified A28-deficient virions and demonstrated that they are noninfectious because of their inability to penetrate cells for initiation of a second round of replication.
Present address: Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, N.Y. ![]()
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