Previous Article | Next Article ![]()
Journal of Virology, December 2004, p. 13430-13439, Vol. 78, No. 24
0022-538X/04/$08.00+0 DOI: 10.1128/JVI.78.24.13430-13439.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Mark J. Biscone,1
Arwen Vermeulen,1
Laurie J. Earp,2
Judith M. White,2 and
Paul Bates1*
Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania,1 Department of Microbiology, University of Virginia, Charlottesville, Virginia2
Received 12 May 2004/ Accepted 26 July 2004
|
|
|---|
|
|
|---|
The envelope element that interacts directly with the target lipid bilayer is referred to as the fusion peptide, a region of around 20 mostly hydrophobic amino acids at or near the amino terminus of TM. The TM subunit also has two regions predicted to display a helical secondary structure; these two regions are located between the fusion peptide and the membrane-spanning domain and are often referred to as HR1 and HR2 (for heptad repeats 1 and 2). In the absence of the SU domain, the heptad repeats form a highly stable coiled-coil known as the six-helix bundle, with three HR2 regions packed antiparallel against an internal HR1 trimer (6). The six-helix bundle is thought to represent the postfusion conformation of TM, and it is the formation of this stable structure that is thought to drive membrane fusion.
Synthetic peptides derived from the HR2 regions of envelopes from several viruses have proven to be specific and potent inhibitors of viral entry and cell-cell fusion mediated by their respective viral envelope proteins. This has been demonstrated for the retroviruses human immunodeficiency virus (HIV) (22, 48), simian immunodeficiency virus (33), human T-cell leukemia virus (34, 40), and feline immunodeficiency virus (27), two coronaviruses (4, 24), and several paramyxoviruses (23, 35, 51). Fuzeon (enfuvirtide) is a drug which has recently been approved for treating HIV infections based on this paradigm (5). Peptide inhibitors derived from the HR1 region, although less potent, have also been described (24, 47, 52).
The subgroup A avian sarcoma and leukosis virus (ASLV-A) is a prototypic alpharetrovirus that has been employed as a model for studying envelope triggering and viral entry. The receptor for ASLV-A, Tva, can be produced in a soluble form (2) which is sufficient for mediating virus entry into otherwise refractory receptor-deficient cell lines (7). The conversion of envelope to a fusion active state is correlated with a number of biochemical changes. A conformational transformation in the SU subunit results in increased protease sensitivity (8, 19), and changes in the TM subunit include exposure of the fusion peptide (19) and conversion to an oligomeric structure as observed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) (1, 26, 29, 41). In addition, receptor binding induces envelope to bind liposomes, consistent with exposure of the fusion peptide (8, 9, 21). Unlike either the classical pH-dependent or pH-independent viruses, ASLV receptor binding can initiate envelope activation for subsequent further activation by acidic pH, revealing multiple triggering events (28). Here we describe the design of an effective HR2 inhibitor for ASLV-A. We used this inhibitor as a tool to probe conformational changes in TM, and we began to examine viral escape mechanisms for this important new type of fusion inhibitor.
|
|
|---|
Stocks of the replication-competent avian retroviral vector RCAS(A)AP (38) were produced on TEF. Murine leukemia virus (MLV) pseudotypes were produced by CaPO4 transfection of 293T cells as described previously (49). Virus-containing medium was filtered (0.45-µm pore size) and stored at 80°C. MLV(Ebola GP) pseudotypes were filtered and then concentrated by centrifugation through a cushion of 20% sucrose in Dulbecco's phosphate-buffered saline (D-PBS) at 200,000 x g for 45 min at 4°C. Pelleted virus was resuspended in HEPES-buffered saline (HBS; 20 mM HEPES [pH 7.7], 130 mM NaCl, 0.5 mM MgCl2) and stored at 80°C.
To purify ASLV-A for the liposome association and TM oligomerization assays, virus-containing supernatant was harvested from DF-1 cells chronically infected with a recombinant ASLV-A [RCASBP(A)-GFP], filtered (0.45-µm pore size), and layered onto a step gradient with steps of 20 and 60% sucrose in D-PBS. Following a 2-h centrifugation at 80,000 x g at 4°C, the 20-to-60% interface was isolated and diluted threefold with D-PBS. The diluted sample was layered above 20% sucrose in D-PBS and spun again, and the viral pellet was resuspended in HBS overnight at 4°C. For the TM oligomerization assay, this stock was used directly without freezing.
Plasmids. Expression constructs pCB6-EnvA and pCB6-EboGP, encoding envelopes from ASLV-A (18) and the Zaire subtype of Ebola virus (49), respectively, have been described elsewhere. pCB6-myc-EnvA encodes a myc epitope tag near the amino terminus of SU and has also been described previously (3). Mutant plasmids were engineered with the QuikChange site-directed mutagenesis kit (Stratagene, La Jolla, Calif.) using pCB6-myc-EnvA as a template and the following mutagenic oligonucleotides (and their respective complements): OS676 (5'-CAGGCTAACTTGACAGCATCACTCCTCGGGG-3') for pCB6-T55A; OS674 (5'-GACAACATCACTCGCCGGGGACTTATTGG-3') for pCB6-L58A; OS592 (5'-CCTCGGGGACTTAGCGGATGATGTCACG-3') for pCB6-L62A; and OS590 (5'-GATGTCACGAGTATTGAACACGCGGTCCTG-3') for pCB6-R69E. Amino acid numbering begins after the polybasic cleavage site for both ASLV-A TM and Ebola GP2.
Proteins. Peptides were synthesized by Alpha Diagnostic International, Inc., with N-terminal acetylation, C-terminal amidation, and purification to greater than 95%. The sequences (N to C termini) of the peptides are as follows: R42, RLASWSVKQANLTTSLLGDLLDDVT; R57, LLGDLLDDVTSIRHAVLQNRAAIDF; R99, FNLSDHSESIQKKFQLMKEHVNKIG; R102, SDHSESIQKKFQLMKEHVNKIGVDS; E109, IEPHDWTKNITDKIDQIIHDFVDKT;E112, HDWTKNITDKIDQIIHDFVDKTLPD. R99-Bio is identical to R99 except that it is biotinylated at its C terminus. All peptides were solubilized in water with the exception of R42, which was reconstituted in 25% dimethyl sulfoxide due to its insolubility in water. Aliquots of reconstituted peptide were stored at 20°C. Soluble ASLV-A receptor, sTva, was purified from the medium of Sf9 cells infected with a baculovirus recombinant as described elsewhere (2).
Viral infections. Cells were seeded in 35-mm wells, 16 to 20 h prior to infection, at a density of approximately 4 x 105 cells per well. Viral stocks were diluted in medium (see above) and incubated with peptide in a total volume of 2 ml at room temperature for 2 min and then used to challenge the target cells. Infectivity was measured 48 h postinfection. For the MLV pseudotypes, titer was determined by staining for ß-galactosidase activity and counting positive cells as described previously (49); titers were in the range of 2 x 105 to 5 x 105 infectious units per ml and were 3- to 10-fold higher when using centrifugal inoculation. For RCAS(A)AP infection of TEF cells, a histochemical stain for alkaline phosphatase (AP) activity was used to calculate viral titer (38).
To determine the incorporation of ASLV-A envelope into MLV pseudotypes, virus was concentrated and purified by centrifugation as described for MLV(Ebola GP) above, lysed in Triton lysis buffer (1% Triton X-100, 150 mM NaCl, 50 mM Tris [pH 8.0], 5 mM EDTA [pH 8.0]), separated by SDS-PAGE, and transferred to a nitrocellulose membrane. Envelope was detected by Western blotting as described previously (38) using an anti-ASLV-A TM antibody (50) at a 1:1,000 dilution.
Peptide addition and removal experiments. QT6 cells were seeded and infected as described above using centrifugal inoculation at 4°C in a refrigerated, table-top centrifuge for 2.5 h at 1,700 x g. For the peptide addition experiments, unbound virus was washed away with ice-cold D-PBS, 37°C medium was added to the cells, and the plates were placed in a 37°C incubator. At various times after the temperature increase, R99 was added to a final concentration of either 10 µg/ml for wild-type MLV(EnvA) pseudotypes or 50 µg/ml for MLV(EnvA-L62A). Viral titers were determined as described above. The peptide inhibitor washout experiments were performed in much the same way. Following centrifugal inoculation, unbound virions were removed by washing with ice-cold D-PBS. Ice-cold medium containing 80 nM sTva and 10 µg of R99/ml was added to the cells for 1 h at 4°C. After this incubation, an equal volume (1 ml) of prewarmed medium (50°C) was added, and the cells were placed at 37°C. At the desired time points, the cells were placed on ice, washed three times with ice-cold medium, and then returned to the 37°C incubator. Viral titers were determined as described above. Incubation of cell-bound virus at 4°C with or without 10 µg of R99/ml, followed by three washes as above, yielded equivalent infectivity, indicating that the peptide was adequately removed and that the virus did not become peptide sensitive at this temperature.
Cell-cell fusion. Effector cells were generated by CaPO4 transfection of 293T cells in 8.5-cm dishes with 0.5 µg of pCB6-EnvA and 10 µg of a plasmid encoding HIV-1 Tat (kindly provided by Michael Malim, King's College London). To enhance envelope expression, sodium butyrate was added at 20 h posttransfection to a final concentration of 10 mM and then removed 4 h later. At 48 h posttransfection, transfected cells and Tva-expressing HeLa-MAGI cells (see above) were released from their dishes by treatment with 5 mM EDTA in D-PBS without MgCl2 and CaCl2 and then coseeded in 96-well plates. The cells were allowed to adhere for 3 h and then washed once with D-PBS prior to incubation in fusion medium (RPMI medium 1640 with 0.2% bovine serum albumin and 10 mM HEPES adjusted to pH 5.25 or 7.0) for 10 min. The cells were washed again with D-PBS and returned to DMEM with 10% FCS. R99 was included at a final concentration of 5 µg/ml where indicated. Twelve hours later, ß-galactosidase activity was measured using the Galacto-Star system (Applied Biosystems) as per the manufacturer's instructions. Luminescence was recorded with a Trilux 1450 MicroBeta luminescence counter (Wallac).
Peptide inhibition in the presence of bafilomycin. QT6 cells were treated for 30 min at 37°C with or without 10 nM bafilomycin, cooled to 4°C, and infected with MLV(EnvA) pseudotype virus in the continued presence of bafilomycin with centrifugal inoculation for 2.5 h as described above. Soluble receptor (20 nM final sTva) and R99 (5 µg/ml final concentration) were added as indicated, and cells were warmed to 37°C and incubated at that temperature for 30 min. Medium containing receptor and peptide was removed, monolayers were washed with bafilomycin-containing medium, and fresh medium with 10 nM bafilomycin was added to the cells. After incubation at 37°C for another 1 h, cells were washed with D-PBS and drug-free medium was added. Viral titer was determined 48 h postinfection as described above.
Liposome association assays. Liposomes were synthesized as a 2:1 ratio of egg phosphatidylcholine (13 mM) and cholesterol (6.5 mM) in chloroform with 40 mM n-octyl-ß-D-glucopyranoside by using the Mini Lipoprep apparatus (Amika) as per the manufacturer's instructions and overnight dialysis against D-PBS without MgCl2 and CaCl2. Binding of soluble, oligomeric ASLV-A envelope to liposomes was performed as described previously (9). Proteins were separated by SDS-PAGE and analyzed by Western blotting with polyclonal antisera against the SU subunit of ASLV-A envelope. This rabbit antiserum was raised against an ASLV-A SU-immunoadhesin (53).
An "underlay" method was used to gauge association between virus and liposomes. Concentrated RCASBP(A)-GFP was incubated with sTva for 30 min at 4°C in a total volume of 40 µl of HBS. Liposomes (40 µl) were added, and the samples were incubated at 37°C for 30 min. Each sample was then mixed with 170 µl of 65% sucrose in D-PBS and used as the bottom layer of a three-step sucrose gradient, with a 150-µl middle layer of 25% and a 300-µl top step of 5%. The gradient was spun in 5- by 41-mm tubes (Beckman Ultra-Clear) at 150,000 x g for 2.5 h at 4°C. Following centrifugation, fractions of 300, 100, and 300 µl were collected, starting at the top. Proteins were precipitated with trichloroacetic acid as previously described (9), separated by SDS-PAGE, and analyzed by Western blotting with an anti-EnvA TM polyclonal antiserum.
TM oligomerization assay. Purified RCASBP(A)-GFP was incubated on ice for 30 min along with, as specified, 250 ng of sTva, 20 µl of liposomes, 0.5 µg of R99-Bio, and 0, 0.5, or 5 µg of unmodified R99. Samples were then incubated at 37°C for 30 min and returned to ice, and the cross-linker bis(sulfosuccinimidyl)suberate was added to a final concentration of 4 mM for 2 h. The cross-linking reaction was stopped by addition of glycine to 80 mM on ice for 15 min. Low-SDS Laemmli buffer was added (final SDS concentration, 0.1%) and incubated at 37°C for 10 min prior to separation by electrophoresis on a Criterion Tris-HCl 4-to-15% polyacrylamide gradient gel (Bio-Rad). Following transfer to nitrocellulose, biotinylated peptides were detected with horseradish peroxidase-conjugated streptavidin and SuperSignal chemiluminescence (Pierce).
For immunoprecipitation of TM complexes, cross-linked samples were incubated in RIPA buffer (140 mM NaCl, 10 mM Tris-Cl [pH 8], 5 mM EDTA, 1% sodium deoxycholate, 1% Triton X-100, and 0.1% SDS) for 1 h at 4°C. Samples were precleared with protein A-Sepharose and Sepharose CL-4B (Sigma), and then 2 µl of polyclonal rabbit antiserum directed against a peptide derived from the cytoplasmic domain of TM (18) was added and incubated for 1 h at 4°C. To precipitate the immune complexes, a 1:1 mixture of protein A-Sepharose/Sepharose CL-4B was added and incubated for 1 h at 4°C. The precipitate pellet was washed once with RIPA buffer, eluted with Laemmli buffer at 100°C for 10 min, and then analyzed by SDS-PAGE as described above.
|
|
|---|
![]() View larger version (25K): [in a new window] |
FIG. 1. Comparison of the TM subunit of ASLV-A envelope with Ebola virus GP2. (A) Schematic diagram of the ASLV-A envelope. The fill patterns depict the predicted domains of the TM subunit as follows: diagonal lines, fusion peptide (FP); shaded, N- and C-terminal HRs (HR1 and HR2); horizontal lines, membrane-spanning domain (MSD). Shown below the schematic diagram is a sequence alignment of the heptad repeats and intervening sequences from the TM of ASLV-A and Ebola virus GP2 (Zaire subtype), with the one-letter amino acid code. For the Ebola sequence, dots indicate amino acids identical to ASLV-A TM and the asterisk in the ASLV-A sequence designates a space introduced in order to align the two sequences (16, 46). The cylinders mark regions predicted to be helical, and the brackets indicate the sequence of synthetic peptides. (B) Ribbon diagram showing the structure of Ebola virus GP2 (46) using RasMol modeling. The substitutions introduced into the HR1 domain of the TM subunit of ASLV-A are each in positions for which the sequence alignment displays identical residues between the two viruses; the side chains for these mutated residues are shown (ASLV numbering). The region corresponding to E109 and R99 is shown in dark.
|
Peptide inhibition of viral infection. The ability of each peptide to inhibit viral entry was initially tested using viral pseudotypes. Pseudotypes based on an MLV core were produced by transient transfection of 293T cells with three plasmids encoding viral envelope, MLV gag/pol, and an MLV genome containing a ß-galactosidase reporter gene (42). This system allows for envelope function to be tested independently of the virus from which it was derived. The four ASLV-specific peptides and one Ebola-specific peptide (E112) were tested for their ability to inhibit infection of avian QT6 cells by MLV(EnvA)-pseudotyped virus. Both of the ASLV HR2-derived peptides demonstrated significant inhibitory activity (Fig. 2A). The 50% inhibitory concentration (IC50) for R102 was approximately 15 µg/ml (5 µM), while R99 was more potent, with an IC50 of approximately 0.5 µg/ml (170 nM). The two HR1 peptides, R42 and R57, did not inhibit MLV(EnvA) infectivity at concentrations up to 100 µg/ml (data not shown). The Ebola virus-specific peptide, E112, had no effect on MLV(EnvA) (Fig. 2A). Interestingly, neither E112 nor E109 was able to inhibit the infectivity of pseudotyped virus carrying the Ebola virus glycoprotein at concentrations up to 200 µg/ml. R102 was unable to inhibit either MLV(Ebola GP) or MLV(MLV) infectivity (data not shown), thereby confirming the specificity of this peptide for ASLV envelope. To ensure that the inhibition observed was not limited to the pseudotype system, the two ASLV HR2 peptides were tested for their ability to block infection of recombinant ASLV-A that expresses an AP marker gene [RCAS(A)AP]. As seen in Fig. 2B, R99 and R102 inhibition of RCAS(A)AP infection of TEF cells correlated well with the inhibition seen with MLV(EnvA) infection of QT6 cells. The somewhat increased sensitivity to peptide exhibited by RCAS(A)AP might be due to differences in envelope density, cell type, or to the replication competence of RCAS(A)AP allowing secondary infections.
![]() View larger version (17K): [in a new window] |
FIG. 2. Peptide inhibition of infection. (A) MLV(EnvA) pseudotypes were used to infect QT6 cells in the presence of R99 (squares), R102 (circles), or Ebola virus-derived E112 (triangles). (B) ASLV-A [RCAS(A)AP] was used to infect TEF cells in the presence of R99 (squares) or R102 (circles). Percent infectivity is relative to the titer in the absence of peptide. Each data point is the average of three experiments, and error bars indicate standard deviations.
|
![]() View larger version (17K): [in a new window] |
FIG. 3. Effect of single amino acid substitutions in HR1 on sensitivity to HR2 peptides. MLV(EnvA) pseudotypes were generated with either wild-type ASLV-A envelope (diamonds) or HR1 mutants T55A (triangles), L62A (squares), or R69E (circles). Virus was incubated with either R102 (A) or R99 (B) for 2 min at room temperature prior to challenging QT6 cells. Percent infectivity is relative to the titer in the absence of peptide. Data points are the averages of three experiments (wild type and L62A) with error bars marking standard deviations, or they are from a single representative experiment (T55A and R69E).
|
For the R99 removal experiment, peptide was added to cells with bound virus after the 4°C wash and before elevating the temperature. At various times following the temperature shift, medium containing unbound peptide was removed, the cell monolayer was washed, and 37°C peptide-free medium was added. Initial experiments showed that it was difficult to achieve complete inhibition after peptide removal (data not shown). This observation suggested the presence of a reservoir of unexposed R99 binding sites, possibly representing envelope trimers on the virion that have not yet been triggered by engaging receptor on the host cell surface. To allow synchronous and complete activation of viral envelopes, soluble receptor (sTva) was added to cell-bound virus at 4°C. Addition of soluble receptor after binding virus to the cells did in fact now allow for the complete inhibition of infection in the R99 washout experiments (Fig. 4A). No inhibition occurred when the peptide was removed simultaneously with the temperature shift, indicating that the target of R99 action is not accessible at 4°C (Fig. 4A). Within the first 15 min at 37°C, virus became completely sensitive to R99, as removing the peptide after this time still caused full inhibition.
![]() View larger version (17K): [in a new window] |
FIG. 4. Sensitivity to HR2 peptide as a function of time at 37°C. Pseudotyped virus was allowed to bind QT6 cells at 4°C, and then unbound virus was washed away. (A) Peptide removal experiment to determine the time at which the R99 binding site is exposed. Cold medium containing 10 µg of R99/ml and 80 nM sTva was added to cells, and 1 h later cells were rapidly warmed to 37°C. For each time point, cells were washed to remove peptide and then returned to 37°C. Infectivity is normalized to a control in which the peptide was washed away prior to the warm-up step. Data points are averages of three replicates. (B) Peptide addition experiment to assess the longevity of its efficacy. Cells were warmed to 37°C, and R99 was added to a final concentration of 10 (wild-type) or 50 (L62A) µg/ml at the indicated time. MLV pseudotypes bore either a wild-type ASLV-A envelope (squares) or the L62A mutant (circles). For each pseudotype, infectivity was normalized to a control in which peptide was not added. Each data point is the average of three replicates.
|
HR2 peptide inhibition does not require acid activation. The activation of ASLV envelope has been proposed to be a multistep process involving receptor binding and acidic pH sequentially (29). Supporting this model, envelope-mediated cell-cell fusion is considerably enhanced by lowering the pH (12, 28, 29). In order to determine how this effect relates to exposure of the R99 peptide binding site, a quantitative cell-cell fusion assay was developed. Effector cells (293T cells transfected with ASLV-A envelope- and HIV-1 Tat-expressing plasmids) were mixed with target cells (a stable HeLa-MAGI cell line expressing the Tva receptor), exposed to pH 5.25 for 10 min, and then assayed 12 h later for ß-galactosidase activity by chemiluminescence. The HeLa-MAGI cells contain an HIV-1 LTR-lacZ cassette such that Tat-induced ß-galactosidase activity can be used to measure fusion of the two distinct cell types. When 5 µg of R99/ml was included throughout this assay, ß-galactosidase activity was reduced more than 95% (Fig. 5, lane 2), demonstrating fusion inhibition. A similar level of inhibition was observed when unbound peptide was washed away immediately prior to the acidification step (Fig. 5, lane 3), showing that acid is not a requirement for exposure of the peptide binding site. Fusion was reduced approximately 50% when R99 was present only during the acidification step (Fig. 5, lane 4); however no inhibition was observed when R99 was added immediately after the acid pulse (Fig. 5, lane 5). These findings are consistent with an acid-induced envelope refolding event that eliminates the peptide binding site. The level of ß-galactosidase activity detected when cell-cell fusion was done at neutral pH was about 10-fold lower than when done with an acid pulse, in agreement with a previous report (12). Cell-cell fusion performed at neutral pH was similarly inhibited by R99 (12) (data not shown).
![]() View larger version (13K): [in a new window] |
FIG. 5. Inhibition of cell-cell fusion by HR2 peptide occurs prior to acid activation. Transfected 293T cells expressing ASLV-A envelope and HIV-1 Tat were seeded in an equimolar ratio with HeLa-MAGI cells stably expressing the Tva receptor. Cells were allowed to attach for 3 h, washed, pulsed with low-pH medium (pH 5.25), washed again, and assayed for ß-galactosidase activity 12 h later. R99 was included at 5 µg/ml during the 3-h attachment period (lane 3), during the acid pulse (lane 4), during the 12-h recovery phase (lane 5), or throughout the entire assay (lane 2). Lane 1 is a control in which R99 was not used.
|
|
View this table: [in a new window] |
TABLE 1. Neutralization of endosomes by bafilomycin does not reduce HR2 peptide efficacy
|
![]() View larger version (62K): [in a new window] |
FIG. 6. Liposome binding is not blocked by HR2 peptides. Sucrose step gradients were used to separate liposomes by their buoyant densities. Soluble, oligomeric ASLV-A envelope (A) or ASLV-A virions (B) were incubated with or without soluble receptor (sTva) to activate envelope in the presence or absence of HR2 peptides. The R102 peptide was used at a concentration of 50 µg/ml (A), and R99 was used at 30 µg/ml (B). Each fraction (top, middle, bottom) was examined by SDS-PAGE and Western blotting with antisera against either the SU (A) or TM (B) subunit. Samples were loaded in the dense bottom fraction, so that liposome-associated material would float to the upper, less-dense fractions. The retarded migration of SU in the bottom fraction of the first gradient in panel A is an SDS-PAGE artifact.
|
90 kDa was noted, consistent with the additional mass provided by binding of three 3-kDa peptides per TM oligomer. Binding of biotinylated R99 to TM90 could be competed by addition of unlabeled ASLV-specific peptide (Fig. 7A). In contrast, the Ebola virus-specific HR2 peptide E109, even when included at a 10-fold molar excess, was unable to compete with biotinylated R99 (data not shown). Liposomes were included as shown, since they were found to increase the stability of the triggered oligomer or the efficiency of the conformational change (1).
![]() View larger version (49K): [in a new window] |
FIG. 7. HR2 peptide binds to a triggered form of TM. ASLV-A was incubated on ice with combinations of soluble receptor (sTva), liposomes, and/or the HR2 peptide R99, triggered at 37°C, and then cross-linked on ice. Samples were examined by SDS-PAGE and Western blotting and probed with horseradish peroxidase-conjugated streptavidin to detect biotinylated R99 (R99-Bio). Locations of molecular mass standards are shown on the left of each blot. (A) R99-Bio is detected in a position consistent with binding to triggered, oligomeric TM and can be competed by unlabeled R99. The band labeled TM90 migrates somewhat slower than triggered TM in the absence of HR2 peptide (see Results). Soluble receptor (sTva) and/or liposomes were added to the reaction mixture as indicated. Unlabeled R99 was included either in an equimolar amount (1x) or as a 10-fold excess (10x) to R99-Bio, as shown. (B) Appearance of R99-Bio in the TM90 position is dependent upon incubation time at 37°C. (C) TM90 is efficiently immunoprecipitated by antiserum directed against the TM subunit.
|
|
|
|---|
Ebola virus-specific peptides analogous to the ASLV HR2 peptides were ineffective at inhibiting infection of MLV(Ebola GP)-pseudotyped virus. In contrast, a peptide identical to E109 has been reported to block infection of VSV(Ebola GP)-pseudotyped virus (45), although the apparent IC50 (2 mg/ml) was 20-fold higher than the maximum concentration tested in this work. A possible reason for the remarkable difference in HR2 peptide efficacy between the Ebola viral and retroviral envelopes is the mode of virus entry. To date, all of the reported HR2 inhibitors have been directed against pH-independent viruses, with the exception of the Ebola virus peptide mentioned above. The location of the virus at the time that the HR2 peptide-sensitive, transient intermediate is formed might play a significant role in sensitivity. The peptide concentration in an endosomal compartment, where a pH-dependent envelope such as the Ebola virus GP (43, 49) is triggered, would be expected to be lower than at the cell surface, where a pH-independent envelope would be triggered. Although acidic pH appears to play a role in ASLV entry, the initial triggering of envelope is dependent on receptor and not pH (9, 12, 19, 21, 26, 28, 29). Given the analogous peptides E109 and R99 and the similarity between Ebola GP2 and ASLV TM, this might be a demonstration of the important role that mode of entry plays in susceptibility to HR2 peptides. Alternatively, the basis for the difference between E109 and R99 may be a sequence-specific structure. In order to preserve the sequence alignment, ASLV TM has an insertion of one residue within its HR2 in comparison to Ebola GP2 (16, 46), and this distinction might contribute to the difference in peptide potency. Finally, a general kinetic difference between acid- and receptor-activated conformational changes might impart significant disparity in susceptibility to peptide inhibitors. For HIV-1, sensitivity to an HR2 peptide correlates with fusion kinetics (36).
Only one of the three viable HR1 mutations, L62A, displayed a change in sensitivity to HR2 peptides. This mutation increased the IC50 for R99 about 20-fold for infectivity of pseudotyped MLV(EnvA) particles (Fig. 3B) and about 10-fold in a quantitative cell-cell fusion assay (data not shown). Since these substitutions were selected based on the likelihood of involvement in HR1-HR2 interactions, these results might expose the limitations of the Ebola GP2 structure as a surrogate for ASLV TM. Alternatively, perhaps HR2 binding to HR1 is not easily perturbed by single amino acid substitutions. We are currently examining ASLV-A mutants that were selected by passage in the presence of R99, which should provide useful information on the array of envelope residues that can influence HR2 peptide sensitivity.
The putative target for HR2 peptides is the coiled-coil formed by a trimer of the N-terminal HR. Current models for class I viral fusion proteins suggest that this target becomes accessible following envelope activation and becomes inaccessible after formation of the stable six-helix bundle, or the homotrimer of hairpins. Consistent with this model, R99 has no effect on virus binding (12), but instead acts upon a transiently accessible intermediate that appears within several minutes at 37°C (Fig. 4A). The ability of R99 to inhibit infection is then lost after 15 to 30 min (Fig. 4B), which is somewhat more rapid than for inhibition of HIV-1 envelope-mediated cell-cell fusion by an HR2 peptide (30). An important distinction of the viral infectivity experiment, however, is that it evaluates only loss of inhibition and does not directly measure six-helix bundle formation. Endocytosis of viral particles might be expected to decrease the effectiveness of HR2 peptide as well. Thus, our inhibitor addition experiments do not distinguish between clearance of a linear intermediate from the cell surface or progression to a peptide-resistant conformation of TM. In fact, inhibition appears to be lost slower than the reported rate of ASLV internalization from the cell surface (31). What is clear from both the infection and cell-cell fusion studies is that the peptide inhibition of membrane fusion is independent of a low-pH environment. The most straightforward explanation of these results is that receptor engagement alone, most likely at the cell surface, induces structural rearrangements in TM that expose the peptide inhibitor binding sites.
Several assays have been developed to study ASLV-A envelope triggering, and an HR2 inhibitor is a useful tool for investigating the nature of the events these assays are measuring. Conformational changes in SU, manifested by increased protease sensitivity (8, 19), are unaffected by R99 (data not shown). Similarly, ASLV-A envelope achieves a lipophilic state in the presence of HR2 peptides (Fig. 6). These peptide-insensitive transformations most likely characterize the conversion of envelope from its native, metastable structure to an elongated, peptide-sensitive, prehairpin intermediate. Lipid mixing between virus and host cell has been shown to be inhibited by R99, albeit at higher concentrations than those needed to inhibit infection (12). Cell-cell fusion, which occurs more readily after exposure to acidic medium, is also blocked by peptide (Fig. 5) at concentrations similar to those needed to block infectivity (data not shown). Inhibition of cell-cell fusion by R99 is observed to a similar extent whether it is performed at neutral or acidic pH (reference 12 and data not shown).
The TM subunit undergoes a significant conformational change upon receptor activation, such that its migration by SDS-PAGE shifts from a monomeric to oligomeric, possibly trimeric species that we have designated as TM80 (1, 29, 41). It has been proposed that receptor binding and low pH operate synergistically to induce TM refolding to a stable fusogenic conformation (41); other parameters which have been shown to influence the efficiency with which this structure forms include time, temperature, presence of target lipid, Ca2+, virus preparation, and possibly glycosylation (1, 10, 29, 41). Several observations have suggested the idea that the triggered, oligomeric form of TM90 is the stable six-helix bundle. First, the receptor, time, and temperature requirements for this rearrangement all mirror the conditions necessary for viral entry (1). Second, triggered TM migration on SDS-PAGE has been reported to be 70 to 90 kDa depending upon the conditions, which could be a dense trimer of the native, 37-kDa monomer. Third, its stability is reminiscent of six-helix bundles from other class I viral envelopes (14), with reports that it has a melting temperature in the 65 to 80°C range (1, 29), or even that it is stable at 100°C in low concentrations of SDS (41). Finally, mutations in the SU subunit that impair viral entry at a postbinding step also impair the TM refolding event; TM mutations which suppress the entry defect also restore the ability of TM to undergo conformational change (1). Acidic pH has been shown to be necessary for efficient TM refolding (29, 41), consistent with a proposed role for endocytosis and acidification in viral entry (11, 29). However, our results and those of Matsuyama et al. (26) demonstrate that conformational change can be induced without an acidification step. Furthermore, in the experiments described here no noticeable difference was detected when the pH of the assay mixture was lowered. One reason for the discrepancy of our results and those of others may be that the assay was performed near enough to the reported pH threshold for activation of 6.7 to 7.0 (41) that further acidification had no effect. Another possibility is that the protein species detected by Western blotting may be heterogeneous, with a mix of intermediate and stable end product. This possibility might explain why oligomeric TM appears characteristic of a stable six-helix bundle and yet, as we demonstrated, still has the ability to bind HR2 peptide. Thus, differences in the manner that the assay is performed could dictate the distribution of detectable species. Use of a relatively low concentration of SDS as in this study (0.1%) might favor detection of less stable intermediates; under neutral pH conditions, the activated form of TM is not observed as reliably with SDS concentrations above 0.5% (data not shown).
An intermediate in the fusogenic pathway might not be expected to display the stability of triggered TM. Possibly this species is heterogeneous as mentioned or, alternatively, the HR2 peptide is binding a precursor to triggered TM, and thus some amount is trapped upon conversion to the stable fusogenic conformation. Arguing against this idea is the observation that the TM conversion is not blocked by the peptide, which is the expected result if it corresponds to a postfusogenic six-helix bundle. This result might be seen if the peptide were used at concentrations too low to inhibit, although it was tested at concentrations several times higher than that which completely blocks viral entry. Similar observations have been made by Matsuyama et al. (26). In addition, the mobility shift observed for TM90 suggests that the majority of triggered TM is associated with R99-Bio. A final possibility is that this species is neither a true intermediate nor an authentic postfusion structure, but instead is a dead-end artifact that has refolded nonproductively. However, as outlined above, the biological relevance of the TM oligomer is supported by several lines of evidence. Thus, it remains likely that R99-Bio is binding a species that is an intermediate. Since acidic pH appears to play an important role in ASLV-A entry, perhaps the absence of an acid pulse in these experiments has allowed the capture of this stage. It is unclear if the final, six-helix bundle conformation is formed under these assay conditions. Alternatively, it may form but not be distinguishable from the intermediate form when resolved by SDS-PAGE. R99 can be seen bound to the 150-kDa form of TM (Fig. 7C), although generally R99 decoration of TM90 appears to be more robust. This, coupled with the observation that formation of the 150-kDa species is not blocked by HR2 peptide, suggests that the larger species is an oligomeric variant of TM90 and not a final conformation. It has been recently suggested that the final structure migrates at about 100 kDa (26), a form that is not readily apparent in the data reported here. Generation of this 100-kDa form requires a low-pH pulse and is inhibited by R99 (26).
These results support the existence of a receptor-induced, HR2 peptide-sensitive intermediate. Similarly, HIV-1 is able to bind HR2 peptide only after CD4 triggering of its envelope (15), and the paramyxovirus SV5 becomes sensitive to HR2 peptide only after host cell binding and subsequent thermal activation (39). The surprisingly stable ASLV intermediate is reached in the absence of acid exposure but is quickly transcended during acidification (Fig. 5). This interpretation is consistent with the observation that endocytosed virions can remain infectious for several hours in the presence of ammonium chloride (31). Envelope-mediated liposome binding occurs in the presence of HR2 peptide (Fig. 6) and does not require acidification (9, 21, 28), suggesting that the stable intermediate is a linear, prehairpin structure, with its fusion peptide anchored in the target membrane. The role of acidification is thus likely to be downstream of this intermediate, possibly in formation of six-helix bundles. However, the observation that envelope-mediated lipid mixing occurs at neutral pH and yet is blocked by HR2 peptide (12) may mean that transition of the stable peptide-sensitive envelope to a final conformation involves more than a single step, analogous to the multiple stages suggested for activation of influenza virus hemagglutinin (32).
This work was funded by National Institutes of Health grants AI43455 (P.B.), CA76256 (P.B.), F32-AI050341 (S.M.A.), T32-GM07229 (R.C.N.), T32-AI07324 (J.W.B.), and AI22470 (J.M.W.).
Present address: Department of Medicine, Harvard Medical School at the Beth Israel Deaconess Medical Center, Boston, MA 02215. ![]()
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»